Wall clock time and date at job start Sat Apr 11 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00205 * 2 1 4 4 C 1.53005 * 109.47480 * 270.00382 * 3 2 1 5 5 O 1.42900 * 109.47161 * 64.99471 * 4 3 2 6 6 C 1.42902 * 113.99994 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47174 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.46495 * 65.00202 * 7 6 5 9 9 C 1.36941 * 119.99494 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99831 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99836 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46974 * 89.99806 * 13 11 9 15 15 H 1.48498 * 109.47148 * 209.99775 * 13 11 9 16 16 H 1.48500 * 109.47183 * 330.00146 * 13 11 9 17 17 C 1.34777 * 119.99751 * 180.02562 * 2 1 3 18 18 O 1.21799 * 119.99393 * 181.68330 * 17 2 1 19 19 C 1.41688 * 120.00326 * 1.67690 * 17 2 1 20 20 C 1.39189 * 125.87581 * 343.36421 * 19 17 2 21 21 C 1.38085 * 107.67785 * 179.97438 * 20 19 17 22 22 C 1.39508 * 107.57015 * 0.24634 * 21 20 19 23 23 C 1.40623 * 132.41188 * 180.49351 * 22 21 20 24 24 C 1.36288 * 119.15958 * 179.59599 * 23 22 21 25 25 C 1.39973 * 120.04123 * 359.69068 * 24 23 22 26 26 N 1.30649 * 120.98708 * 0.02771 * 25 24 23 27 27 N 1.37156 * 108.20262 * 359.59964 * 22 21 20 28 28 H 1.08996 * 109.46966 * 264.48144 * 1 2 3 29 29 H 1.09000 * 109.46940 * 24.48845 * 1 2 3 30 30 H 1.09004 * 109.46804 * 144.48104 * 1 2 3 31 31 H 1.09007 * 109.46998 * 29.99859 * 3 2 1 32 32 H 1.08997 * 109.47654 * 149.99650 * 3 2 1 33 33 H 1.08995 * 109.47570 * 184.99724 * 4 3 2 34 34 H 1.09001 * 109.46448 * 304.99836 * 4 3 2 35 35 H 1.08996 * 109.47258 * 300.00057 * 6 5 4 36 36 H 1.08999 * 109.46707 * 60.00195 * 6 5 4 37 37 H 1.09000 * 109.47071 * 184.99761 * 7 6 5 38 38 H 1.08995 * 109.47222 * 305.00627 * 7 6 5 39 39 H 0.96993 * 120.00431 * 359.97438 * 8 7 6 40 40 H 0.96999 * 120.00117 * 180.02562 * 12 11 9 41 41 H 1.07993 * 126.16031 * 0.02562 * 20 19 17 42 42 H 1.08001 * 126.21658 * 179.97438 * 21 20 19 43 43 H 1.07995 * 120.41738 * 359.30682 * 23 22 21 44 44 H 1.07999 * 119.97944 * 179.71411 * 24 23 22 45 45 H 1.07998 * 119.50797 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4425 5 8 1.2061 1.9936 -2.0814 6 6 1.3324 2.4166 -3.4405 7 6 -0.0567 2.6897 -4.0209 8 7 -0.6657 3.8215 -3.3177 9 6 -1.9179 4.2514 -3.6679 10 1 -2.4565 3.7558 -4.4620 11 6 -2.4947 5.3241 -3.0020 12 7 -1.8384 5.9277 -2.0339 13 14 -4.2031 5.9101 -3.4791 14 1 -5.2182 5.1845 -2.6737 15 1 -4.3163 7.3681 -3.2210 16 1 -4.4330 5.6434 -4.9218 17 6 2.1389 -1.1672 -0.0005 18 8 3.3565 -1.1674 0.0305 19 6 1.4309 -2.3940 -0.0370 20 6 0.0795 -2.5647 0.2492 21 6 -0.2152 -3.9052 0.0974 22 6 0.9610 -4.5552 -0.2769 23 6 1.2491 -5.8997 -0.5716 24 6 2.5197 -6.2448 -0.9236 25 6 3.5176 -5.2658 -0.9948 26 7 3.2527 -4.0147 -0.7273 27 7 1.9598 -3.6190 -0.3612 28 1 -0.3633 -0.0988 1.0229 29 1 -0.3633 0.9352 -0.4260 30 1 -0.3633 -0.8365 -0.5971 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0732 2.6064 -1.4438 34 1 2.9643 0.9131 -1.9815 35 1 1.9300 3.3271 -3.4836 36 1 1.8207 1.6336 -4.0207 37 1 0.0326 2.9261 -5.0812 38 1 -0.6824 1.8058 -3.8971 39 1 -0.1821 4.2663 -2.6043 40 1 -2.2417 6.6771 -1.5683 41 1 -0.6139 -1.7885 0.5372 42 1 -1.1800 -4.3673 0.2462 43 1 0.4744 -6.6500 -0.5150 44 1 2.7568 -7.2743 -1.1481 45 1 4.5214 -5.5488 -1.2750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701039152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:49 Heat of formation + Delta-G solvation = 71.980784 kcal Electronic energy + Delta-G solvation = -28064.753294 eV Core-core repulsion = 24086.451021 eV Total energy + Delta-G solvation = -3978.302272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29519 -39.77071 -37.74973 -37.35219 -35.58267 -34.34607 -33.56227 -31.76749 -31.04254 -29.98671 -28.75170 -27.58943 -26.66515 -25.15260 -23.57060 -23.41527 -22.30849 -21.48184 -21.08089 -20.01216 -17.84057 -17.54895 -17.11816 -16.76220 -16.30716 -16.17065 -16.03234 -15.63808 -15.33897 -15.02629 -14.58503 -14.23684 -13.89393 -13.82919 -13.66512 -13.17510 -12.99138 -12.94084 -12.80572 -12.70159 -12.58905 -12.27294 -11.81722 -11.62526 -11.41680 -11.11782 -11.09237 -10.85658 -10.78972 -10.77743 -10.44428 -9.99079 -9.89343 -9.66243 -9.17726 -9.12809 -8.83420 -8.61466 -8.01785 -6.84463 -5.69919 -2.97829 0.15870 0.71071 1.61162 2.06453 2.92153 3.03867 3.36390 3.46868 3.51757 3.53619 3.97062 4.08442 4.15249 4.27209 4.54355 4.64536 4.65656 4.90372 5.04311 5.23285 5.23932 5.30513 5.34569 5.42368 5.51181 5.55181 5.59347 5.62244 5.63940 5.69940 5.75486 5.79008 5.86736 5.93410 6.00145 6.10630 6.28697 6.39595 6.45500 6.58903 6.65806 6.80210 7.34176 7.38862 7.65668 7.74854 8.20104 8.48791 9.60260 10.19247 10.55587 11.52941 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002456 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.140248 B =11397.755609 C =11969.214462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.593 5.593 3 C 0.123 3.877 4 C 0.045 3.955 5 O -0.370 6.370 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.237 4.237 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.579 3.421 18 O -0.539 6.539 19 C -0.016 4.016 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.002 4.002 23 C -0.016 4.016 24 C -0.200 4.200 25 C 0.122 3.878 26 N -0.244 5.244 27 N -0.219 5.219 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.184 0.816 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -25.673 5.372 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.325 5.325 3 C 0.001 3.999 4 C -0.033 4.033 5 O -0.289 6.289 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.371 5.371 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 C 0.369 3.631 18 O -0.418 6.418 19 C -0.134 4.134 20 C -0.151 4.151 21 C -0.195 4.195 22 C -0.114 4.114 23 C -0.042 4.042 24 C -0.223 4.223 25 C -0.071 4.071 26 N -0.052 5.052 27 N 0.019 4.981 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.201 0.799 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.167 0.833 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.554 -24.713 5.358 27.031 hybrid contribution -0.974 -0.318 -0.275 1.061 sum 8.579 -25.031 5.083 26.944 Atomic orbital electron populations 1.22622 0.78791 1.05879 1.01191 1.47409 1.07548 1.04993 1.72592 1.21564 0.98338 0.84294 0.95721 1.22860 0.87561 0.99006 0.93900 1.87991 1.27817 1.87494 1.25591 1.22765 0.99212 0.97370 0.82449 1.20682 0.90251 0.91866 0.94452 1.42288 1.17716 1.34862 1.42277 1.19236 0.92642 1.10668 1.14277 0.91312 1.24725 0.98582 0.98960 0.98807 1.69673 1.37699 1.24960 1.25795 0.86204 0.84534 0.77772 0.77766 1.21759 1.21852 1.20859 1.15724 0.86814 0.82735 0.77803 1.90867 1.12910 1.87455 1.50536 1.18938 0.93096 0.84663 1.16685 1.22397 0.92962 0.97738 1.01983 1.21127 0.96673 0.93606 1.08107 1.19491 0.90551 0.90628 1.10706 1.20918 0.97586 0.93124 0.92602 1.21452 0.93343 1.01545 1.05914 1.24142 1.01469 0.88430 0.93050 1.76152 0.95932 1.18266 1.14870 1.45431 1.04567 1.06932 1.41146 0.92307 0.88634 0.89648 0.88888 0.88576 0.92529 0.93653 0.93419 0.94148 0.95165 0.95663 0.77920 0.93623 0.79910 0.82548 0.82705 0.83292 0.78874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 8.47 59.85 0.51 1.20 16 2 N -0.59 -8.44 2.84 -184.97 -0.52 -8.97 16 3 C 0.12 1.71 5.80 -4.04 -0.02 1.69 16 4 C 0.04 0.68 6.28 37.16 0.23 0.91 16 5 O -0.37 -6.67 9.22 -35.23 -0.32 -6.99 16 6 C 0.06 1.05 6.07 37.16 0.23 1.27 16 7 C 0.16 3.28 6.65 -4.04 -0.03 3.25 16 8 N -0.73 -19.01 5.55 -59.90 -0.33 -19.34 16 9 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 13 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.58 9.32 7.48 -14.94 -0.11 9.20 16 18 O -0.54 -10.25 16.18 5.10 0.08 -10.16 16 19 C -0.02 -0.23 6.61 -83.74 -0.55 -0.78 16 20 C -0.13 -1.40 8.46 -39.28 -0.33 -1.73 16 21 C -0.17 -1.62 10.92 -39.16 -0.43 -2.05 16 22 C 0.00 -0.02 6.80 -84.11 -0.57 -0.59 16 23 C -0.02 -0.11 10.11 -39.38 -0.40 -0.51 16 24 C -0.20 -1.21 10.04 -39.63 -0.40 -1.61 16 25 C 0.12 1.00 11.29 -17.40 -0.20 0.81 16 26 N -0.24 -3.29 11.45 30.61 0.35 -2.94 16 27 N -0.22 -3.06 4.01 -8.28 -0.03 -3.10 16 28 H 0.06 0.57 7.41 -51.93 -0.38 0.18 16 29 H 0.10 1.38 7.23 -51.93 -0.38 1.00 16 30 H 0.09 0.97 5.00 -51.93 -0.26 0.71 16 31 H 0.09 1.22 8.07 -51.92 -0.42 0.80 16 32 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.39 10.72 7.67 -40.82 -0.31 10.40 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.18 1.60 4.53 -52.49 -0.24 1.36 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 45 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -38.11 378.17 -7.85 -45.96 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.15 Total: 6.46 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.32 Total: 3.62 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.18 Total: -62.15 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.24 Total: -17.16 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.11 -7.85 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701039152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.943 kcal (2) G-P(sol) polarization free energy of solvation -38.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds