Wall clock time and date at job start Sat Apr 11 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99593 * 2 1 4 4 H 1.07997 * 119.99787 * 197.73444 * 3 2 1 5 5 C 1.38809 * 120.00564 * 17.73377 * 3 2 1 6 6 N 1.31622 * 119.99742 * 16.18335 * 5 3 2 7 7 Si 1.86797 * 120.00507 * 196.18293 * 5 3 2 8 8 H 1.48507 * 109.46891 * 94.98274 * 7 5 3 9 9 H 1.48494 * 109.47257 * 214.98194 * 7 5 3 10 10 H 1.48494 * 109.46959 * 334.98750 * 7 5 3 11 11 C 1.46499 * 120.00116 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47030 * 270.00114 * 11 2 1 13 13 C 1.53004 * 109.46961 * 180.02562 * 12 11 2 14 14 N 1.46507 * 109.46918 * 180.02562 * 13 12 11 15 15 C 1.34769 * 119.99566 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00717 * 359.97438 * 15 14 13 17 17 C 1.50709 * 119.99749 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47052 * 174.43779 * 17 15 14 19 19 C 1.53000 * 115.54909 * 295.27776 * 18 17 15 20 20 S 1.81402 * 109.47464 * 269.25817 * 19 18 17 21 21 C 1.81398 * 101.92308 * 176.71481 * 20 19 18 22 22 O 1.42103 * 108.57596 * 291.20316 * 20 19 18 23 23 O 1.42103 * 108.57454 * 62.22606 * 20 19 18 24 24 C 1.52995 * 117.52283 * 80.98290 * 18 17 15 25 25 C 1.52991 * 60.00162 * 107.47960 * 24 18 17 26 26 H 1.09005 * 109.46903 * 272.96823 * 1 2 3 27 27 H 1.09000 * 109.46880 * 32.96991 * 1 2 3 28 28 H 1.09004 * 109.46471 * 152.96753 * 1 2 3 29 29 H 0.96999 * 120.00282 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47103 * 150.00255 * 11 2 1 31 31 H 1.08991 * 109.47233 * 30.00199 * 11 2 1 32 32 H 1.08997 * 109.47189 * 59.99701 * 12 11 2 33 33 H 1.09001 * 109.47020 * 300.00001 * 12 11 2 34 34 H 1.08996 * 109.47018 * 60.00062 * 13 12 11 35 35 H 1.09001 * 109.47000 * 299.99702 * 13 12 11 36 36 H 0.96994 * 119.99976 * 359.97438 * 14 13 12 37 37 H 1.08998 * 109.47185 * 54.43783 * 17 15 14 38 38 H 1.08998 * 109.46707 * 294.43178 * 17 15 14 39 39 H 1.09007 * 109.47096 * 149.25549 * 19 18 17 40 40 H 1.08998 * 109.47000 * 29.26088 * 19 18 17 41 41 H 1.08994 * 109.47445 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47090 * 300.00615 * 21 20 19 43 43 H 1.09003 * 109.47116 * 59.99904 * 21 20 19 44 44 H 1.09001 * 117.50249 * 214.97632 * 24 18 17 45 45 H 1.09007 * 117.49732 * 359.97438 * 24 18 17 46 46 H 1.08998 * 117.50107 * 252.51392 * 25 24 18 47 47 H 1.09004 * 117.49996 * 107.48946 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1911 1.2082 -0.2849 5 6 1.5051 2.3596 0.3661 6 7 0.3578 2.3072 1.0091 7 14 2.2659 4.0132 -0.0535 8 1 1.6916 4.5129 -1.3286 9 1 1.9751 4.9820 1.0336 10 1 3.7356 3.8591 -0.1994 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2181 -3.0344 1.4438 14 7 3.4617 -3.4570 2.8253 15 6 4.1242 -4.6045 3.0720 16 8 4.5182 -5.2875 2.1506 17 6 4.3743 -5.0395 4.4931 18 6 5.0151 -6.4288 4.4959 19 6 4.1421 -7.5592 3.9473 20 16 3.1938 -8.3033 5.3030 21 6 2.1777 -9.5224 4.4246 22 8 4.0933 -8.9954 6.1581 23 8 2.3371 -7.3121 5.8534 24 6 6.5216 -6.5130 4.2422 25 6 5.9668 -6.7655 5.6455 26 1 -0.3633 0.0532 1.0263 27 1 -0.3633 0.8622 -0.5593 28 1 -0.3632 -0.9155 -0.4671 29 1 -0.0925 3.1272 1.2653 30 1 3.1500 -1.1386 -0.5133 31 1 1.6086 -2.0285 -0.5129 32 1 1.5001 -1.8398 1.9571 33 1 3.0416 -0.9498 1.9568 34 1 4.1705 -2.9038 0.9301 35 1 2.6294 -3.7945 0.9302 36 1 3.1463 -2.9110 3.5623 37 1 3.4287 -5.0745 5.0342 38 1 5.0443 -4.3294 4.9778 39 1 4.7761 -8.3179 3.4882 40 1 3.4561 -7.1590 3.2009 41 1 1.5470 -10.0518 5.1386 42 1 1.5504 -9.0130 3.6929 43 1 2.8254 -10.2352 3.9142 44 1 6.8907 -7.3736 3.6845 45 1 7.0564 -5.5784 4.0729 46 1 6.1367 -5.9971 6.3997 47 1 5.9710 -7.7924 6.0111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707378413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:16 Heat of formation + Delta-G solvation = -62.142453 kcal Electronic energy + Delta-G solvation = -26489.706099 eV Core-core repulsion = 22608.739007 eV Total energy + Delta-G solvation = -3880.967092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08697 -38.06933 -37.27687 -36.30646 -36.19808 -34.70423 -32.09854 -30.60634 -30.32170 -29.49883 -28.64671 -25.95248 -25.13444 -22.80960 -22.07450 -20.98404 -20.32114 -19.61787 -19.07112 -17.12008 -16.84554 -16.77033 -16.54538 -16.34550 -15.84035 -15.66424 -15.24226 -14.79968 -14.60261 -14.10031 -13.78867 -13.63715 -13.62624 -13.36045 -13.15578 -12.96220 -12.72252 -12.65736 -12.31177 -12.26957 -12.01989 -11.73251 -11.61022 -11.54467 -11.33173 -11.24865 -11.08465 -10.86023 -10.76792 -10.74116 -10.47332 -10.11817 -10.06649 -9.89955 -9.79813 -9.61019 -8.93364 -8.53883 -6.83610 -5.74978 -3.15336 -0.38466 2.37749 2.65448 3.05766 3.24736 3.37522 3.44371 3.45581 3.56051 3.63271 4.07749 4.18823 4.36914 4.38761 4.49466 4.50610 4.57004 4.88320 4.97033 5.19594 5.22190 5.25064 5.32402 5.41582 5.43144 5.45738 5.51255 5.66642 5.70436 5.82685 5.85359 5.92959 6.10226 6.21941 6.41140 6.59911 6.74391 6.79904 6.98423 7.39071 7.58280 7.68554 7.80554 8.25850 8.36697 9.22112 9.86671 10.33697 11.31215 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.002056 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.822215 B =13613.517175 C =14095.706209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.070 0.930 5 C -0.002 4.002 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.157 3.843 12 C -0.151 4.151 13 C 0.120 3.880 14 N -0.727 5.727 15 C 0.509 3.491 16 O -0.540 6.540 17 C -0.118 4.118 18 C -0.101 4.101 19 C -0.561 4.561 20 S 2.413 3.587 21 C -0.662 4.662 22 O -0.940 6.940 23 O -0.936 6.936 24 C -0.141 4.141 25 C -0.193 4.193 26 H 0.023 0.977 27 H 0.050 0.950 28 H -0.004 1.004 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -23.576 8.580 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.200 4.200 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.028 3.972 12 C -0.192 4.192 13 C -0.004 4.004 14 N -0.378 5.378 15 C 0.295 3.705 16 O -0.418 6.418 17 C -0.158 4.158 18 C -0.103 4.103 19 C -0.690 4.690 20 S 2.596 3.404 21 C -0.810 4.810 22 O -0.937 6.937 23 O -0.933 6.933 24 C -0.179 4.179 25 C -0.230 4.230 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.275 -23.736 8.834 26.350 hybrid contribution 0.024 1.087 -0.672 1.278 sum 7.299 -22.649 8.161 25.156 Atomic orbital electron populations 1.20811 0.82409 0.95993 0.98954 1.44045 1.02043 1.00748 1.85771 1.19263 0.95667 0.84586 1.38672 0.91169 1.24923 0.97781 0.98249 0.99057 1.70111 1.17846 1.26401 1.41055 0.86239 0.78604 0.84078 0.77666 1.21561 1.21845 1.20504 1.20697 0.95948 0.88194 0.92315 1.22568 0.99668 0.94069 1.02930 1.21495 1.00190 0.97068 0.81615 1.46226 1.57740 1.23836 1.10000 1.20518 0.77790 0.81010 0.91164 1.90674 1.50931 1.53910 1.46285 1.21403 1.03885 0.95115 0.95426 1.20343 0.92173 0.93216 1.04573 1.29844 1.12827 1.08321 1.17980 1.08168 0.76988 0.77045 0.78219 1.30314 1.16453 1.18564 1.15710 1.93568 1.63736 1.74335 1.62087 1.93596 1.66388 1.57857 1.75428 1.23003 0.93218 1.03824 0.97820 1.23689 1.02211 1.05004 0.92098 0.95845 0.93136 0.98511 0.93791 0.93637 0.94280 0.92105 0.91315 0.91852 0.92044 0.76378 0.87253 0.87794 0.84663 0.84114 0.85279 0.85211 0.85371 0.88203 0.88201 0.87538 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.03 59.85 0.54 4.54 16 2 N -0.60 -15.00 2.93 -181.12 -0.53 -15.53 16 3 C -0.25 -6.86 9.70 -15.06 -0.15 -7.00 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.00 -0.06 5.04 -17.43 -0.09 -0.15 16 6 N -0.91 -26.27 10.60 55.49 0.59 -25.68 16 7 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.16 3.09 5.71 -4.04 -0.02 3.07 16 12 C -0.15 -2.59 5.65 -26.73 -0.15 -2.75 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 14 N -0.73 -9.05 5.56 -60.29 -0.33 -9.39 16 15 C 0.51 6.32 7.38 -10.98 -0.08 6.24 16 16 O -0.54 -8.16 14.89 5.56 0.08 -8.07 16 17 C -0.12 -1.12 5.58 -27.88 -0.16 -1.27 16 18 C -0.10 -0.91 1.11 -154.51 -0.17 -1.09 16 19 C -0.56 -4.13 5.46 37.16 0.20 -3.93 16 20 S 2.41 17.87 5.10 -107.50 -0.55 17.32 16 21 C -0.66 -2.82 10.62 101.05 1.07 -1.75 16 22 O -0.94 -9.38 16.04 -57.83 -0.93 -10.30 16 23 O -0.94 -10.29 17.68 -57.83 -1.02 -11.31 16 24 C -0.14 -1.19 9.82 -26.74 -0.26 -1.45 16 25 C -0.19 -1.55 9.30 -26.74 -0.25 -1.80 16 26 H 0.02 0.61 7.59 -51.93 -0.39 0.22 16 27 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 28 H 0.00 -0.08 7.86 -51.93 -0.41 -0.49 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.30 8.47 -40.82 -0.35 3.95 16 37 H 0.11 0.96 7.72 -51.93 -0.40 0.56 16 38 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.14 0.69 7.88 -51.92 -0.41 0.28 16 40 H 0.14 1.07 6.81 -51.93 -0.35 0.72 16 41 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 44 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.12 0.99 6.32 -51.93 -0.33 0.67 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -36.30 394.80 -9.32 -45.62 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.01 Total: 0.34 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.47 Total: -5.64 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.28 Total: -50.60 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.87 Total: -29.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Atomic # 16 Polarization: 17.87 SS G_CDS: -0.55 Total: 17.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.30 -9.32 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707378413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.524 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds