Wall clock time and date at job start Sat Apr 11 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00114 * 2 1 4 4 C 1.53005 * 109.46627 * 269.99667 * 3 2 1 5 5 C 1.53006 * 109.46984 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47319 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00234 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00181 * 180.02562 * 7 6 5 10 10 N 1.31620 * 119.99512 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47049 * 59.99767 * 11 9 7 13 13 H 1.48497 * 109.47105 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46681 * 299.99887 * 11 9 7 15 15 C 1.34776 * 119.99943 * 179.97438 * 2 1 3 16 16 O 1.21284 * 120.00354 * 180.02562 * 15 2 1 17 17 C 1.50700 * 120.00107 * 0.02562 * 15 2 1 18 18 C 1.52995 * 109.47584 * 175.63894 * 17 15 2 19 19 C 1.53011 * 115.54918 * 294.60357 * 18 17 15 20 20 S 1.81401 * 109.46610 * 269.03300 * 19 18 17 21 21 C 1.81403 * 101.91967 * 174.85489 * 20 19 18 22 22 O 1.42098 * 108.57951 * 289.34459 * 20 19 18 23 23 O 1.42102 * 108.57790 * 60.37197 * 20 19 18 24 24 C 1.53005 * 117.52218 * 80.29847 * 18 17 15 25 25 C 1.52996 * 117.50342 * 148.92927 * 18 17 15 26 26 H 1.08999 * 109.46979 * 270.00196 * 1 2 3 27 27 H 1.08993 * 109.46965 * 30.00227 * 1 2 3 28 28 H 1.08998 * 109.47018 * 150.00519 * 1 2 3 29 29 H 1.08994 * 109.47197 * 29.99397 * 3 2 1 30 30 H 1.09004 * 109.46985 * 149.99664 * 3 2 1 31 31 H 1.08994 * 109.47111 * 299.99782 * 4 3 2 32 32 H 1.08992 * 109.47014 * 60.00347 * 4 3 2 33 33 H 1.09002 * 109.47031 * 300.00206 * 5 4 3 34 34 H 1.09004 * 109.46803 * 59.99890 * 5 4 3 35 35 H 0.97003 * 119.99686 * 0.02562 * 6 5 4 36 36 H 0.97004 * 119.99765 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46866 * 55.63664 * 17 15 2 38 38 H 1.09003 * 109.47281 * 295.63845 * 17 15 2 39 39 H 1.08996 * 109.47234 * 149.03406 * 19 18 17 40 40 H 1.08995 * 109.46572 * 29.03092 * 19 18 17 41 41 H 1.08992 * 109.47314 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47330 * 300.00329 * 21 20 19 43 43 H 1.09003 * 109.46747 * 59.99940 * 21 20 19 44 44 H 1.08999 * 117.50221 * 214.97665 * 24 18 17 45 45 H 1.09005 * 117.49494 * 359.97438 * 24 18 17 46 46 H 1.08996 * 117.50049 * 359.97438 * 25 18 17 47 47 H 1.09008 * 117.49918 * 144.99959 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 3.2171 3.0356 -1.4427 6 7 3.4618 3.4581 -2.8238 7 6 4.1341 4.6245 -3.0742 8 1 4.4844 5.2327 -2.2533 9 6 4.3656 5.0251 -4.3829 10 7 3.9383 4.2840 -5.3833 11 14 5.2834 6.6158 -4.7244 12 1 6.6406 6.5423 -4.1263 13 1 5.3984 6.8158 -6.1913 14 1 4.5401 7.7541 -4.1269 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1673 0.0010 17 6 1.3854 -2.4723 0.0005 18 6 2.3759 -3.6332 -0.1085 19 6 3.1574 -3.7128 -1.4216 20 16 2.2527 -4.7519 -2.6016 21 6 3.2578 -4.5777 -4.1016 22 8 2.3235 -6.1017 -2.1632 23 8 0.9803 -4.1652 -2.8386 24 6 3.0949 -4.0715 1.1690 25 6 1.9966 -4.9516 0.5688 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6085 2.0284 0.5137 30 1 3.1499 1.1383 0.5139 31 1 3.0416 0.9506 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 2.6276 3.7951 -0.9290 34 1 4.1695 2.9057 -0.9286 35 1 3.1469 2.9120 -3.5611 36 1 4.1003 4.5637 -6.2979 37 1 0.7017 -2.4971 -0.8481 38 1 0.8182 -2.5645 0.9268 39 1 4.1396 -4.1465 -1.2342 40 1 3.2754 -2.7113 -1.8353 41 1 2.8148 -5.1649 -4.9060 42 1 3.2935 -3.5286 -4.3953 43 1 4.2688 -4.9346 -3.9049 44 1 4.1245 -4.4165 1.0740 45 1 2.8625 -3.5325 2.0875 46 1 1.0416 -4.9919 1.0925 47 1 2.3038 -5.8757 0.0789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:21 Heat of formation + Delta-G solvation = -66.814208 kcal Electronic energy + Delta-G solvation = -27066.056685 eV Core-core repulsion = 23184.887010 eV Total energy + Delta-G solvation = -3881.169675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29963 -38.20348 -37.19783 -36.22957 -36.02792 -34.81494 -32.37847 -30.55816 -30.19204 -29.38426 -28.60593 -26.92821 -25.03618 -22.87560 -22.75112 -21.01829 -20.30624 -19.21811 -18.79188 -17.19236 -17.05402 -16.73145 -16.61876 -16.38166 -15.98868 -15.64673 -15.19722 -14.62066 -14.52599 -14.42228 -13.62180 -13.53837 -13.48087 -13.44036 -13.19298 -13.04627 -12.88727 -12.65854 -12.55110 -12.25931 -12.20278 -12.12235 -11.90714 -11.76159 -11.69601 -11.47931 -11.15612 -10.92526 -10.83543 -10.75469 -10.71002 -10.39461 -10.11710 -10.02663 -9.72236 -9.56754 -8.85481 -8.66070 -6.90818 -5.75121 -3.03746 -0.28377 2.46657 2.59721 2.87414 3.30825 3.44518 3.44914 3.48821 3.50227 3.73523 4.11258 4.22322 4.36936 4.46466 4.52165 4.60775 4.62927 4.74088 4.98097 5.00503 5.14789 5.19485 5.22898 5.32822 5.38839 5.42245 5.43140 5.46962 5.57778 5.60636 5.67562 5.70351 5.73313 5.85385 5.92899 6.08742 6.30356 6.39194 6.53643 6.86579 6.89004 7.33567 7.70521 8.15490 8.43946 9.54672 10.13277 10.47974 11.47918 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002652 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.649845 B =10557.191860 C =11775.099998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.616 5.616 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.511 3.489 16 O -0.528 6.528 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.563 4.563 20 S 2.414 3.586 21 C -0.661 4.661 22 O -0.942 6.942 23 O -0.937 6.937 24 C -0.141 4.141 25 C -0.193 4.193 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 -21.197 11.919 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.377 5.377 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.298 3.702 16 O -0.404 6.404 17 C -0.154 4.154 18 C -0.102 4.102 19 C -0.692 4.692 20 S 2.597 3.403 21 C -0.810 4.810 22 O -0.939 6.939 23 O -0.934 6.934 24 C -0.179 4.179 25 C -0.230 4.230 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.316 -21.527 12.030 25.722 hybrid contribution 1.105 1.379 -0.787 1.934 sum -6.211 -20.148 11.242 23.894 Atomic orbital electron populations 1.21874 0.79557 1.03881 1.01748 1.47936 1.07056 1.06378 1.73615 1.21489 0.97470 0.83533 0.97924 1.22058 1.01076 0.98888 0.95764 1.20540 0.96002 0.91930 0.88696 1.42343 1.68376 1.25931 1.01099 1.19206 1.27907 0.98164 0.91793 0.91217 1.24751 1.01739 0.99058 0.95553 1.69657 1.51557 1.38976 0.98171 0.86244 0.79690 0.83279 0.76842 1.21259 1.21676 1.21266 1.20530 0.88193 0.85097 0.76358 1.90713 1.13609 1.87204 1.48880 1.21421 0.97840 0.90687 1.05475 1.20364 1.01072 0.96179 0.92621 1.29867 1.12240 1.17006 1.10101 1.08090 0.77447 0.76485 0.78240 1.30301 1.16490 1.12324 1.21867 1.93562 1.87203 1.32897 1.80285 1.93582 1.36256 1.78949 1.84605 1.22997 0.97609 1.01602 0.95660 1.23674 1.01187 0.94134 1.04036 0.92575 0.90476 0.90768 0.90560 0.89793 0.91699 0.91948 0.96419 0.96270 0.78339 0.93491 0.87157 0.88026 0.84571 0.83969 0.85266 0.84949 0.85326 0.88131 0.88325 0.87618 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.27 59.85 0.61 1.20 16 2 N -0.62 -7.18 2.87 -181.57 -0.52 -7.70 16 3 C 0.12 1.59 5.41 -4.04 -0.02 1.57 16 4 C -0.14 -2.33 5.65 -26.73 -0.15 -2.48 16 5 C 0.16 3.23 6.26 -4.04 -0.03 3.21 16 6 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 11 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 C 0.51 6.37 7.25 -10.99 -0.08 6.29 16 16 O -0.53 -8.28 14.47 5.55 0.08 -8.20 16 17 C -0.11 -1.07 4.25 -27.89 -0.12 -1.19 16 18 C -0.10 -0.94 1.09 -154.50 -0.17 -1.11 16 19 C -0.56 -4.83 5.46 37.16 0.20 -4.63 16 20 S 2.41 20.56 5.06 -107.50 -0.54 20.02 16 21 C -0.66 -4.11 10.62 101.05 1.07 -3.04 16 22 O -0.94 -10.18 16.15 -57.83 -0.93 -11.11 16 23 O -0.94 -11.00 17.63 -57.83 -1.02 -12.02 16 24 C -0.14 -1.20 9.81 -26.73 -0.26 -1.47 16 25 C -0.19 -1.56 9.32 -26.73 -0.25 -1.81 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 29 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.11 0.98 6.71 -51.93 -0.35 0.63 16 38 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.14 0.89 7.87 -51.93 -0.41 0.48 16 40 H 0.14 1.34 6.84 -51.93 -0.36 0.98 16 41 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 44 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.12 1.02 6.36 -51.92 -0.33 0.69 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -38.37 395.62 -8.96 -47.33 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.92 Total: 6.67 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 0.57 Total: -11.03 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.13 Total: -55.30 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.87 Total: -31.33 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 20.56 SS G_CDS: -0.54 Total: 20.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.37 -8.96 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.485 kcal (2) G-P(sol) polarization free energy of solvation -38.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds