Wall clock time and date at job start Sat Apr 11 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35727 * 117.00096 * 2 1 4 4 C 1.39446 * 120.80918 * 180.02562 * 3 2 1 5 5 N 1.31953 * 119.08455 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83621 * 0.02562 * 5 4 3 7 7 C 1.48294 * 119.11038 * 179.97438 * 6 5 4 8 8 O 1.21507 * 120.00220 * 45.70408 * 7 6 5 9 9 N 1.34777 * 119.99983 * 225.69946 * 7 6 5 10 10 C 1.46599 * 119.68220 * 175.90091 * 9 7 6 11 11 C 1.53956 * 110.57475 * 227.82480 * 10 9 7 12 12 C 1.51514 * 107.34428 * 308.94653 * 11 10 9 13 13 H 1.08995 * 109.28140 * 306.30084 * 12 11 10 14 14 C 1.55365 * 107.78974 * 64.86312 * 12 11 10 15 15 H 1.08994 * 111.50706 * 49.83229 * 14 12 11 16 16 C 1.53748 * 100.21658 * 168.50832 * 14 12 11 17 17 C 1.55285 * 101.84505 * 320.91093 * 16 14 12 18 18 N 1.45466 * 117.34394 * 181.23777 * 12 11 10 19 19 C 1.36936 * 126.40986 * 31.27563 * 18 12 11 20 20 H 1.08006 * 119.99819 * 0.02562 * 19 18 12 21 21 C 1.38807 * 120.00357 * 179.97438 * 19 18 12 22 22 N 1.31619 * 120.00235 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00131 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46955 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47004 * 120.00370 * 23 21 19 26 26 H 1.48500 * 109.47650 * 240.00447 * 23 21 19 27 27 C 1.47711 * 119.68161 * 355.88205 * 9 7 6 28 28 N 1.32535 * 121.77764 * 0.27510 * 6 5 4 29 29 C 1.31957 * 120.83742 * 359.43866 * 28 6 5 30 30 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46472 * 299.99125 * 1 2 3 32 32 H 1.08998 * 109.47439 * 59.99211 * 1 2 3 33 33 H 1.08001 * 120.45474 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.25648 * 107.54132 * 10 9 7 35 35 H 1.08999 * 109.25343 * 348.10465 * 10 9 7 36 36 H 1.09000 * 109.87529 * 189.48986 * 11 10 9 37 37 H 1.08993 * 109.94338 * 68.44580 * 11 10 9 38 38 H 1.09004 * 110.94748 * 79.04906 * 16 14 12 39 39 H 1.08999 * 110.95297 * 202.76392 * 16 14 12 40 40 H 1.08997 * 109.91911 * 141.83181 * 17 16 14 41 41 H 1.09008 * 109.91801 * 263.13009 * 17 16 14 42 42 H 0.96996 * 120.00337 * 180.02562 * 22 21 19 43 43 H 1.08994 * 110.07024 * 247.14795 * 27 9 7 44 44 H 1.08998 * 110.07284 * 8.62284 * 27 9 7 45 45 H 1.07993 * 120.46148 * 180.27408 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4367 1.3019 -0.0005 5 7 4.0001 2.4951 0.0000 6 6 3.2611 3.5954 0.0015 7 6 3.9344 4.9167 0.0027 8 8 4.8646 5.1252 -0.7507 9 7 3.5144 5.8863 0.8393 10 6 4.2408 7.1583 0.8993 11 6 4.5144 7.5566 2.3610 12 6 3.1972 7.4758 3.1053 13 1 2.4511 8.0742 2.5826 14 6 2.7464 5.9890 3.1122 15 1 3.5491 5.3295 3.4419 16 6 1.6002 6.0564 4.1348 17 6 2.1719 7.0419 5.1899 18 7 3.2025 7.8386 4.5140 19 6 4.0168 8.7627 5.1124 20 1 4.7437 9.3031 4.5241 21 6 3.9073 9.0057 6.4746 22 7 3.0212 8.3475 7.1914 23 14 5.0187 10.2658 7.2909 24 1 5.9212 10.8625 6.2737 25 1 4.1892 11.3343 7.9037 26 1 5.8290 9.6029 8.3441 27 6 2.3263 5.6573 1.6866 28 7 1.9366 3.5466 0.0080 29 6 1.3023 2.3895 0.0021 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 4.0447 0.4094 -0.0014 34 1 3.6451 7.9354 0.4204 35 1 5.1888 7.0560 0.3711 36 1 4.9012 8.5749 2.4014 37 1 5.2341 6.8691 2.8052 38 1 0.6942 6.4557 3.6790 39 1 1.4138 5.0774 4.5764 40 1 1.3789 7.6926 5.5584 41 1 2.6138 6.4856 6.0167 42 1 2.9444 8.5175 8.1433 43 1 1.5125 6.3117 1.3744 44 1 2.0144 4.6151 1.6197 45 1 0.2229 2.3569 0.0030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:21 Heat of formation + Delta-G solvation = 30.798811 kcal Electronic energy + Delta-G solvation = -29067.425720 eV Core-core repulsion = 25087.337663 eV Total energy + Delta-G solvation = -3980.088057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84362 -40.13320 -38.99896 -38.14332 -35.43145 -34.26572 -32.58098 -32.28682 -31.21321 -29.58916 -28.40093 -27.98896 -25.67251 -24.90262 -24.45016 -23.33604 -22.30471 -20.52273 -20.00021 -19.41282 -18.70383 -18.52865 -17.66612 -16.81859 -16.55706 -16.02703 -15.48786 -15.26236 -15.06741 -14.92894 -14.56829 -14.20605 -14.06021 -13.91847 -13.65898 -13.16359 -13.09447 -12.83777 -12.53859 -12.38264 -12.06722 -11.88564 -11.74120 -11.55729 -11.42877 -11.17067 -10.83159 -10.76484 -10.63811 -10.23393 -10.09472 -9.95648 -9.88269 -9.68625 -9.63993 -9.39906 -9.12595 -8.60832 -8.54089 -6.83895 -5.71245 -3.05025 0.27513 0.59369 2.39699 2.48380 2.73852 3.32985 3.39962 3.45979 3.47962 3.73189 3.75834 3.99107 4.24721 4.49676 4.55380 4.58301 4.65052 4.94797 4.97556 5.19190 5.25548 5.31758 5.38109 5.48661 5.56166 5.60608 5.70861 5.85429 5.88193 6.02943 6.12958 6.19500 6.25115 6.26068 6.37031 6.45765 6.59957 6.61260 6.65248 6.82760 7.06524 7.31346 7.55187 7.57321 7.63005 7.82566 8.07404 8.26612 9.22052 9.84297 10.49878 11.40234 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.003011 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.415295 B = 9295.848333 C =10227.728285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.299 6.299 3 C 0.040 3.960 4 C 0.125 3.875 5 N -0.437 5.437 6 C 0.254 3.746 7 C 0.592 3.408 8 O -0.520 6.520 9 N -0.585 5.585 10 C 0.118 3.882 11 C -0.129 4.129 12 C 0.168 3.832 13 H 0.023 0.977 14 C -0.129 4.129 15 H 0.077 0.923 16 C -0.134 4.134 17 C 0.180 3.820 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.120 3.880 28 N -0.449 5.449 29 C 0.062 3.938 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.184 0.816 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.251 0.749 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 -16.057 -14.676 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.209 6.209 3 C -0.012 4.012 4 C -0.044 4.044 5 N -0.151 5.151 6 C -0.015 4.015 7 C 0.375 3.625 8 O -0.394 6.394 9 N -0.317 5.317 10 C -0.004 4.004 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.040 0.960 14 C -0.150 4.150 15 H 0.096 0.904 16 C -0.173 4.173 17 C 0.055 3.945 18 N -0.318 5.318 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.002 4.002 28 N -0.166 5.166 29 C -0.105 4.105 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.701 -15.101 -14.850 22.214 hybrid contribution -0.327 -0.192 0.638 0.742 sum -7.028 -15.293 -14.212 22.029 Atomic orbital electron populations 1.23269 0.77243 1.05093 1.02046 1.86090 1.22273 1.24871 1.87619 1.21184 0.95188 0.86891 0.97901 1.22862 0.89356 0.96219 0.95982 1.68286 1.39838 0.97594 1.09394 1.22701 0.86323 0.94169 0.98308 1.17155 0.82398 0.81574 0.81365 1.90790 1.28407 1.80273 1.39948 1.48106 1.29417 1.14759 1.39449 1.21739 0.97322 0.83165 0.98177 1.21901 0.99545 1.02317 0.93030 1.20654 0.94190 0.91697 0.87455 0.95994 1.22711 0.99493 0.99645 0.93141 0.90441 1.22706 0.96627 1.00282 0.97671 1.21298 0.90736 0.90828 0.91650 1.43907 1.40792 1.45193 1.01947 1.19074 1.12178 1.12857 0.91245 0.90307 1.24794 0.99267 1.00039 0.96375 1.69963 1.36824 1.43968 1.06225 0.86069 0.79782 0.80688 0.79392 1.20480 1.21810 1.21821 1.22029 0.86232 1.02593 0.89325 1.68371 1.09968 1.28600 1.09670 1.23518 1.01434 0.86672 0.98910 0.87293 0.91786 0.91998 0.79905 0.91323 0.89113 0.90246 0.91319 0.92269 0.92362 0.94470 0.92742 0.93856 0.90507 0.89239 0.80495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.84 101.05 0.99 1.05 16 2 O -0.30 -2.08 10.51 -18.89 -0.20 -2.28 16 3 C 0.04 0.35 6.75 -38.68 -0.26 0.09 16 4 C 0.12 1.27 11.28 -17.05 -0.19 1.08 16 5 N -0.44 -6.14 10.33 -11.03 -0.11 -6.25 16 6 C 0.25 3.75 6.61 -157.05 -1.04 2.71 16 7 C 0.59 9.99 7.52 -12.12 -0.09 9.90 16 8 O -0.52 -10.07 16.45 5.36 0.09 -9.98 16 9 N -0.59 -9.27 3.00 -173.41 -0.52 -9.79 16 10 C 0.12 1.84 6.31 -3.49 -0.02 1.81 16 11 C -0.13 -2.31 5.48 -26.98 -0.15 -2.45 16 12 C 0.17 3.37 2.59 -67.98 -0.18 3.19 16 13 H 0.02 0.46 7.94 -51.93 -0.41 0.04 16 14 C -0.13 -2.28 2.84 -89.34 -0.25 -2.53 16 15 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 16 C -0.13 -2.41 6.55 -25.13 -0.16 -2.58 16 17 C 0.18 4.27 5.38 -2.70 -0.01 4.26 16 18 N -0.59 -14.75 3.30 -164.23 -0.54 -15.29 16 19 C -0.23 -6.13 9.87 -15.06 -0.15 -6.28 16 20 H 0.08 2.07 7.25 -52.48 -0.38 1.69 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.81 10.32 55.49 0.57 -26.24 16 23 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.12 1.78 5.53 -3.75 -0.02 1.76 16 28 N -0.45 -5.56 7.60 -11.03 -0.08 -5.64 16 29 C 0.06 0.56 10.31 -17.04 -0.18 0.38 16 30 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.16 7.71 -51.93 -0.40 -0.24 16 32 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 33 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.42 6.98 -51.93 -0.36 1.06 16 36 H 0.08 1.42 7.65 -51.93 -0.40 1.02 16 37 H 0.07 1.32 8.11 -51.93 -0.42 0.89 16 38 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.97 7.73 -51.93 -0.40 0.57 16 41 H 0.05 1.45 7.15 -51.92 -0.37 1.08 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 44 H 0.09 1.25 4.80 -51.93 -0.25 1.00 16 45 H 0.18 0.93 6.47 -52.49 -0.34 0.60 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -33.95 359.34 -8.44 -42.38 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.22 Total: -1.40 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -1.81 Total: 12.06 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.69 Total: -63.21 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.11 Total: -12.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.95 -8.44 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.183 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds