Wall clock time and date at job start Sat Apr 11 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35462 * 117.00096 * 2 1 4 4 N 1.32428 * 119.11277 * 359.97438 * 3 2 1 5 5 C 1.32131 * 120.97573 * 179.97438 * 4 3 2 6 6 C 1.38806 * 119.22042 * 0.27084 * 5 4 3 7 7 C 1.39472 * 118.38439 * 359.46894 * 6 5 4 8 8 C 1.48460 * 120.51187 * 180.28114 * 7 6 5 9 9 O 1.21477 * 120.00364 * 337.59455 * 8 7 6 10 10 N 1.34781 * 119.99452 * 157.60129 * 8 7 6 11 11 C 1.46950 * 120.43902 * 180.62098 * 10 8 7 12 12 C 1.54058 * 108.29788 * 125.71768 * 11 10 8 13 13 H 1.09007 * 110.52372 * 172.86906 * 12 11 10 14 14 C 1.53370 * 108.83810 * 294.51031 * 12 11 10 15 15 C 1.53005 * 109.24946 * 60.26087 * 14 12 11 16 16 C 1.53001 * 109.80643 * 60.57806 * 15 14 12 17 17 C 1.53373 * 109.27363 * 299.44272 * 16 15 14 18 18 H 1.09002 * 110.59578 * 178.09733 * 17 16 15 19 19 C 1.46945 * 120.44469 * 0.89462 * 10 8 7 20 20 N 1.47566 * 107.98556 * 56.33469 * 17 16 15 21 21 C 1.36939 * 121.61049 * 122.27741 * 20 17 16 22 22 H 1.08002 * 120.00266 * 322.21190 * 21 20 17 23 23 C 1.38818 * 119.99574 * 142.20667 * 21 20 17 24 24 N 1.31613 * 120.00139 * 344.83071 * 23 21 20 25 25 Si 1.86801 * 119.99625 * 164.83312 * 23 21 20 26 26 H 1.48501 * 109.47404 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47400 * 120.00162 * 25 23 21 28 28 H 1.48504 * 109.47032 * 240.00097 * 25 23 21 29 29 N 1.32084 * 119.11603 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46982 * 299.99953 * 1 2 3 31 31 H 1.09002 * 109.46763 * 60.00325 * 1 2 3 32 32 H 1.09002 * 109.46827 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.38983 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.80666 * 179.70554 * 6 5 4 35 35 H 1.08997 * 109.62378 * 245.48458 * 11 10 8 36 36 H 1.08997 * 109.62038 * 6.04862 * 11 10 8 37 37 H 1.08990 * 109.50945 * 300.32170 * 14 12 11 38 38 H 1.09008 * 109.50458 * 180.18635 * 14 12 11 39 39 H 1.09003 * 109.41784 * 300.47252 * 15 14 12 40 40 H 1.09009 * 109.36262 * 180.64222 * 15 14 12 41 41 H 1.08996 * 109.50885 * 179.50068 * 16 15 14 42 42 H 1.08999 * 109.53686 * 59.39841 * 16 15 14 43 43 H 1.08998 * 109.62736 * 353.96140 * 19 10 8 44 44 H 1.08995 * 109.62547 * 114.35296 * 19 10 8 45 45 H 0.97002 * 119.99977 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3063 -0.0005 5 6 1.8670 3.5025 0.0000 6 6 3.2515 3.6013 -0.0047 7 6 4.0003 2.4246 0.0016 8 6 5.4840 2.4753 0.0033 9 8 6.0584 3.4662 -0.4014 10 7 6.1937 1.4217 0.4538 11 6 7.6624 1.4666 0.4726 12 6 8.1380 1.1428 1.9017 13 1 9.2230 1.0423 1.9298 14 6 7.6752 2.2617 2.8431 15 6 6.1477 2.3452 2.8149 16 6 5.5473 1.0193 3.2864 17 6 6.0020 -0.1048 2.3474 18 1 5.6131 -1.0661 2.6834 19 6 5.5093 0.2106 0.9272 20 7 7.4775 -0.1082 2.3217 21 6 8.1989 -1.2186 2.6708 22 1 7.8651 -1.8457 3.4843 23 6 9.3591 -1.5382 1.9789 24 7 9.6114 -0.9698 0.8190 25 14 10.5623 -2.7751 2.6943 26 1 10.0503 -3.2664 3.9988 27 1 10.7110 -3.9190 1.7591 28 1 11.8820 -2.1238 2.8935 29 7 3.3640 1.2557 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2557 4.3928 0.0000 34 1 3.7372 4.5659 -0.0092 35 1 8.0601 0.7293 -0.2246 36 1 8.0017 2.4629 0.1891 37 1 8.0979 3.2113 2.5151 38 1 8.0092 2.0449 3.8578 39 1 5.8149 2.5523 1.7978 40 1 5.8174 3.1475 3.4747 41 1 4.4595 1.0871 3.2729 42 1 5.8860 0.8058 4.3002 43 1 4.4327 0.3807 0.9426 44 1 5.7389 -0.6228 0.2634 45 1 10.4223 -1.1928 0.3357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039752003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:58 Heat of formation + Delta-G solvation = 59.795508 kcal Electronic energy + Delta-G solvation = -30704.419593 eV Core-core repulsion = 26725.588927 eV Total energy + Delta-G solvation = -3978.830666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.68703 -40.28586 -38.48418 -37.58133 -34.55887 -33.52419 -32.84528 -31.78927 -31.56037 -30.30274 -27.82480 -27.12444 -25.71018 -25.18211 -23.97005 -23.28051 -21.69907 -21.23142 -20.33585 -18.67335 -18.26839 -18.04237 -17.00748 -16.56849 -16.26870 -15.73358 -15.32689 -14.89738 -14.86919 -14.63954 -14.20278 -13.97591 -13.92959 -13.55871 -13.23722 -13.16160 -12.79959 -12.49600 -12.29983 -12.13309 -11.96378 -11.56094 -11.49102 -11.20739 -11.08953 -10.94607 -10.76830 -10.63828 -10.37561 -10.26329 -10.13200 -10.04722 -10.01521 -9.61070 -9.33973 -9.23225 -8.72388 -8.58655 -7.78125 -6.46059 -5.85603 -3.35955 0.45165 0.81764 2.30364 2.90029 3.28799 3.34455 3.43445 3.45211 3.67252 3.79599 4.35418 4.43667 4.49757 4.76888 4.98734 5.03998 5.04261 5.26599 5.32376 5.34380 5.44061 5.68275 5.71303 5.74536 5.78499 5.93342 6.08950 6.19548 6.31588 6.41751 6.46917 6.48732 6.53098 6.61102 6.70620 6.74924 6.83245 6.89352 6.96193 7.00413 7.11130 7.26171 7.45645 7.76456 7.80085 7.95392 8.41933 8.44318 9.14066 9.73449 10.42582 11.22294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004162 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.879626 B = 6725.831235 C = 7451.310016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.285 6.285 3 C 0.491 3.509 4 N -0.560 5.560 5 C 0.188 3.812 6 C -0.216 4.216 7 C 0.183 3.817 8 C 0.558 3.442 9 O -0.541 6.541 10 N -0.554 5.554 11 C 0.101 3.899 12 C 0.186 3.814 13 H 0.099 0.901 14 C -0.131 4.131 15 C -0.136 4.136 16 C -0.122 4.122 17 C 0.152 3.848 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.577 5.577 21 C -0.257 4.257 22 H 0.062 0.938 23 C 0.016 3.984 24 N -0.894 5.894 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 N -0.484 5.484 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.125 0.875 44 H 0.069 0.931 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.484 7.316 -0.874 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.186 6.186 3 C 0.189 3.811 4 N -0.290 5.290 5 C 0.021 3.979 6 C -0.239 4.239 7 C 0.036 3.964 8 C 0.343 3.657 9 O -0.420 6.420 10 N -0.282 5.282 11 C -0.022 4.022 12 C 0.079 3.921 13 H 0.116 0.884 14 C -0.170 4.170 15 C -0.174 4.174 16 C -0.162 4.162 17 C 0.044 3.956 18 H 0.096 0.904 19 C -0.060 4.060 20 N -0.298 5.298 21 C -0.386 4.386 22 H 0.079 0.921 23 C -0.184 4.184 24 N -0.536 5.536 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 N -0.213 5.213 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.196 0.804 34 H 0.180 0.820 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.088 0.912 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.374 6.503 -1.190 17.658 hybrid contribution 0.843 0.141 0.345 0.922 sum -15.531 6.644 -0.845 16.914 Atomic orbital electron populations 1.23005 0.75703 1.03653 1.02727 1.86146 1.23307 1.22271 1.86910 1.20882 0.86135 0.84917 0.89156 1.67978 1.41618 0.99390 1.20035 1.23021 0.92157 0.94423 0.88282 1.22758 0.95533 1.00951 1.04681 1.21798 0.95623 0.87905 0.91107 1.17507 0.84324 0.84161 0.79685 1.90775 1.69541 1.32276 1.49393 1.48249 1.08403 1.14345 1.57248 1.22605 0.76073 1.01967 1.01510 1.20960 0.98129 0.84304 0.88715 0.88365 1.22082 0.95200 0.98867 1.00825 1.22057 0.96996 0.96255 1.02113 1.21950 0.97562 0.96599 1.00048 1.21300 0.86498 0.96139 0.91655 0.90397 1.23443 0.99329 0.85916 0.97295 1.44260 0.98470 1.08675 1.78429 1.19073 1.05632 1.03183 1.10737 0.92081 1.25236 1.00630 0.97945 0.94635 1.69945 1.26011 1.45376 1.12311 0.86265 0.81151 0.80884 0.78636 1.20232 1.21673 1.21554 1.67931 1.07149 1.28109 1.18108 0.91871 0.91943 0.87780 0.80373 0.82037 0.88570 0.91019 0.93469 0.92727 0.90522 0.94877 0.94169 0.92531 0.85878 0.91236 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.36 101.05 1.05 1.42 16 2 O -0.29 -3.71 10.56 -18.08 -0.19 -3.90 16 3 C 0.49 6.92 8.48 -91.36 -0.77 6.14 16 4 N -0.56 -6.65 9.20 -14.74 -0.14 -6.78 16 5 C 0.19 1.84 11.30 -17.21 -0.19 1.65 16 6 C -0.22 -2.62 9.71 -38.91 -0.38 -3.00 16 7 C 0.18 2.90 6.40 -82.65 -0.53 2.37 16 8 C 0.56 10.48 4.98 -12.05 -0.06 10.42 16 9 O -0.54 -11.03 16.02 5.39 0.09 -10.95 16 10 N -0.55 -11.07 1.64 -172.84 -0.28 -11.36 16 11 C 0.10 2.20 5.85 -3.24 -0.02 2.18 16 12 C 0.19 4.22 2.61 -66.60 -0.17 4.04 16 13 H 0.10 2.48 6.70 -51.92 -0.35 2.13 16 14 C -0.13 -2.61 5.59 -26.54 -0.15 -2.76 16 15 C -0.14 -2.53 5.55 -26.73 -0.15 -2.68 16 16 C -0.12 -2.26 5.58 -26.54 -0.15 -2.41 16 17 C 0.15 3.13 3.61 -66.85 -0.24 2.89 16 18 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 19 C 0.06 1.27 5.49 -3.49 -0.02 1.25 16 20 N -0.58 -13.70 2.47 -155.15 -0.38 -14.08 16 21 C -0.26 -6.71 9.64 -15.06 -0.15 -6.86 16 22 H 0.06 1.61 7.87 -52.49 -0.41 1.19 16 23 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 24 N -0.89 -24.27 10.89 55.49 0.60 -23.66 16 25 Si 0.90 20.99 29.58 -169.99 -5.03 15.96 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 29 N -0.48 -7.75 6.58 -11.29 -0.07 -7.83 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.16 1.72 7.88 -52.49 -0.41 1.31 16 35 H 0.10 2.36 7.27 -51.93 -0.38 1.98 16 36 H 0.07 1.53 6.99 -51.93 -0.36 1.17 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.08 1.46 2.48 -52.42 -0.13 1.33 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.12 2.26 3.94 -77.32 -0.30 1.95 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -30.12 349.10 -8.29 -38.41 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.12 Total: 3.94 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -2.02 Total: 14.99 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.27 Total: -63.70 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.10 Total: -14.85 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.12 -8.29 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039752003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.202 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds