Wall clock time and date at job start Sat Apr 11 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35733 * 116.99757 * 2 1 4 4 C 1.39447 * 120.80406 * 180.02562 * 3 2 1 5 5 N 1.31963 * 119.08237 * 179.97438 * 4 3 2 6 6 C 1.32546 * 120.83271 * 359.97438 * 5 4 3 7 7 C 1.48291 * 119.10762 * 180.02562 * 6 5 4 8 8 O 1.21505 * 120.00162 * 339.39123 * 7 6 5 9 9 N 1.34775 * 120.00065 * 159.39932 * 7 6 5 10 10 C 1.46592 * 119.75797 * 174.48154 * 9 7 6 11 11 C 1.53858 * 110.72944 * 132.25842 * 10 9 7 12 12 C 1.51979 * 107.29647 * 51.79580 * 11 10 9 13 13 H 1.08995 * 111.57205 * 56.86474 * 12 11 10 14 14 C 1.53701 * 114.99992 * 184.57664 * 12 11 10 15 15 C 1.55299 * 101.81515 * 153.45447 * 14 12 11 16 16 N 1.48151 * 107.21442 * 337.45408 * 15 14 12 17 17 C 1.36939 * 126.39968 * 175.09364 * 16 15 14 18 18 H 1.07996 * 119.99909 * 186.03768 * 17 16 15 19 19 C 1.38810 * 119.99733 * 6.03440 * 17 16 15 20 20 N 1.31618 * 120.00223 * 6.72186 * 19 17 16 21 21 Si 1.86799 * 119.99649 * 186.72735 * 19 17 16 22 22 H 1.48494 * 109.47565 * 94.38133 * 21 19 17 23 23 H 1.48500 * 109.46876 * 214.37971 * 21 19 17 24 24 H 1.48495 * 109.47270 * 334.37721 * 21 19 17 25 25 C 1.45904 * 106.99240 * 355.17797 * 16 15 14 26 26 H 1.09000 * 108.87641 * 273.46849 * 25 16 15 27 27 C 1.47801 * 119.75342 * 354.45866 * 9 7 6 28 28 N 1.32540 * 121.78114 * 0.27927 * 6 5 4 29 29 C 1.31966 * 120.82847 * 359.43936 * 28 6 5 30 30 H 1.08998 * 109.47267 * 300.00026 * 1 2 3 31 31 H 1.08997 * 109.47247 * 59.99816 * 1 2 3 32 32 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.07991 * 120.46429 * 359.95315 * 4 3 2 34 34 H 1.08995 * 109.23414 * 252.57329 * 10 9 7 35 35 H 1.08997 * 109.22846 * 11.94042 * 10 9 7 36 36 H 1.08994 * 109.88247 * 292.34871 * 11 10 9 37 37 H 1.09008 * 109.89432 * 171.24373 * 11 10 9 38 38 H 1.09008 * 110.95906 * 35.32473 * 14 12 11 39 39 H 1.08999 * 110.99455 * 271.60474 * 14 12 11 40 40 H 1.09002 * 109.91656 * 96.90385 * 15 14 12 41 41 H 1.08997 * 109.92119 * 218.00467 * 15 14 12 42 42 H 0.97002 * 119.99660 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.06130 * 112.04113 * 27 9 7 44 44 H 1.09006 * 110.15468 * 350.53003 * 27 9 7 45 45 H 1.07998 * 120.45081 * 180.25443 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4366 1.3020 -0.0005 5 7 4.0000 2.4953 -0.0010 6 6 3.2609 3.5955 -0.0015 7 6 3.9342 4.9168 -0.0027 8 8 5.0877 5.0112 0.3673 9 7 3.2665 6.0130 -0.4139 10 6 3.8941 7.3328 -0.2993 11 6 3.7532 8.1189 -1.6144 12 6 2.2830 8.0968 -1.9987 13 1 1.6557 8.5064 -1.2071 14 6 1.9562 8.7430 -3.3544 15 6 0.6613 7.9890 -3.7623 16 7 0.6502 6.7051 -3.0230 17 6 -0.3583 5.7788 -3.0183 18 1 -0.3005 4.9210 -2.3648 19 6 -1.4550 5.9426 -3.8534 20 7 -1.4659 6.9128 -4.7427 21 14 -2.9153 4.7860 -3.7149 22 1 -3.9379 5.3848 -2.8199 23 1 -3.5028 4.5672 -5.0610 24 1 -2.4661 3.4867 -3.1537 25 6 1.9153 6.6178 -2.3013 26 1 2.6673 6.1823 -2.9593 27 6 1.9071 5.8754 -0.9775 28 7 1.9364 3.5467 0.0039 29 6 1.3023 2.3894 -0.0010 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0447 0.4096 -0.0002 34 1 3.4140 7.8901 0.5050 35 1 4.9518 7.2084 -0.0671 36 1 4.3479 7.6448 -2.3951 37 1 4.0831 9.1476 -1.4688 38 1 2.7549 8.5640 -4.0744 39 1 1.7670 9.8106 -3.2426 40 1 -0.2135 8.5806 -3.4923 41 1 0.6643 7.7995 -4.8356 42 1 -2.2321 7.0270 -5.3265 43 1 1.1759 6.3213 -0.3032 44 1 1.6726 4.8234 -1.1400 45 1 0.2228 2.3568 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042145321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:19 Heat of formation + Delta-G solvation = 37.636324 kcal Electronic energy + Delta-G solvation = -29673.320793 eV Core-core repulsion = 25693.529233 eV Total energy + Delta-G solvation = -3979.791560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65970 -39.99719 -38.82280 -38.01072 -35.30258 -34.14751 -32.98078 -31.76367 -30.98858 -29.28692 -28.52956 -28.00263 -25.47665 -24.79396 -24.23882 -23.42031 -22.13781 -20.46229 -19.95010 -19.40792 -18.48794 -18.35511 -17.42707 -16.69891 -16.46102 -15.90444 -15.33952 -15.16670 -14.86410 -14.76722 -14.55032 -14.17735 -13.94080 -13.77501 -13.63511 -13.33674 -13.14921 -12.66186 -12.35288 -12.11779 -11.95759 -11.83557 -11.60986 -11.54338 -11.31125 -11.07396 -10.91873 -10.80226 -10.70320 -10.26726 -10.10793 -9.89796 -9.83754 -9.67509 -9.55723 -9.06198 -8.86842 -8.66174 -8.38661 -6.86302 -5.76082 -3.09153 0.40193 0.80356 2.62331 2.65434 2.89298 3.32357 3.35586 3.40713 3.65666 3.89140 3.95424 4.11599 4.44595 4.48346 4.77200 4.81377 4.86635 5.03326 5.16194 5.18955 5.22151 5.40136 5.42309 5.62624 5.67615 5.69959 5.81900 5.84727 5.94066 6.08285 6.17020 6.17834 6.26311 6.43194 6.46544 6.54687 6.61765 6.67346 6.78496 6.89096 7.07507 7.43108 7.48718 7.62146 7.74682 7.76977 8.18930 8.25031 9.14272 9.78012 10.47712 11.36779 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.005760 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.700464 B = 4860.259042 C = 7878.210038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.299 6.299 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.431 5.431 6 C 0.242 3.758 7 C 0.589 3.411 8 O -0.523 6.523 9 N -0.584 5.584 10 C 0.114 3.886 11 C -0.118 4.118 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.137 4.137 15 C 0.176 3.824 16 N -0.591 5.591 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.150 3.850 26 H 0.022 0.978 27 C 0.100 3.900 28 N -0.435 5.435 29 C 0.062 3.938 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.183 0.817 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -7.436 9.652 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.209 6.209 3 C -0.007 4.007 4 C -0.050 4.050 5 N -0.146 5.146 6 C -0.026 4.026 7 C 0.372 3.628 8 O -0.397 6.397 9 N -0.316 5.316 10 C -0.008 4.008 11 C -0.157 4.157 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.316 5.316 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.041 3.959 26 H 0.040 0.960 27 C -0.022 4.022 28 N -0.152 5.152 29 C -0.106 4.106 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.200 0.800 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.228 -6.716 9.732 13.364 hybrid contribution -1.828 -1.335 -0.134 2.268 sum 4.400 -8.052 9.598 13.278 Atomic orbital electron populations 1.23295 0.77110 1.05022 1.02398 1.86065 1.22389 1.24923 1.87534 1.21217 0.95191 0.86900 0.97390 1.22820 0.89258 0.96209 0.96745 1.68251 1.39755 0.97544 1.09012 1.22700 0.86259 0.94144 0.99539 1.17147 0.84982 0.81851 0.78787 1.90761 1.15748 1.84922 1.48301 1.48061 1.17809 1.05752 1.60025 1.21639 0.99269 0.82003 0.97929 1.21791 0.97312 0.99751 0.96801 1.22268 0.94694 0.98280 0.98010 0.90393 1.22718 1.00057 0.98957 0.95836 1.21510 0.91951 0.85030 0.96313 1.44227 1.14658 1.19695 1.53057 1.18977 0.96365 1.01730 1.18190 0.90485 1.24784 0.98889 0.98825 0.97890 1.69952 1.30237 1.33351 1.22985 0.86169 0.83094 0.79893 0.76955 1.21641 1.21808 1.20848 1.21152 0.90128 0.93043 0.91580 0.96036 1.22550 0.80225 1.04567 0.94886 1.68593 1.09883 1.27753 1.08978 1.23663 1.01772 0.86736 0.98404 0.91911 0.91515 0.87336 0.80033 0.91521 0.89194 0.91376 0.90698 0.92450 0.92255 0.94288 0.93119 0.93760 0.90778 0.86405 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.30 -2.90 10.51 -18.90 -0.20 -3.09 16 3 C 0.04 0.51 6.74 -38.68 -0.26 0.25 16 4 C 0.12 1.45 11.28 -17.05 -0.19 1.26 16 5 N -0.43 -6.83 10.18 -11.03 -0.11 -6.94 16 6 C 0.24 4.09 7.19 -157.04 -1.13 2.97 16 7 C 0.59 10.68 7.65 -12.13 -0.09 10.58 16 8 O -0.52 -10.40 16.27 5.36 0.09 -10.31 16 9 N -0.58 -9.90 3.01 -173.70 -0.52 -10.42 16 10 C 0.11 1.65 6.35 -3.54 -0.02 1.63 16 11 C -0.12 -1.68 5.72 -26.80 -0.15 -1.83 16 12 C -0.11 -1.94 2.62 -89.51 -0.23 -2.18 16 13 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 14 C -0.14 -2.51 6.54 -25.15 -0.16 -2.68 16 15 C 0.18 4.17 5.44 -1.92 -0.01 4.15 16 16 N -0.59 -14.48 3.36 -162.62 -0.55 -15.03 16 17 C -0.22 -5.92 9.91 -15.06 -0.15 -6.07 16 18 H 0.08 1.94 7.41 -52.49 -0.39 1.55 16 19 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 20 N -0.92 -26.28 10.58 55.49 0.59 -25.69 16 21 Si 0.91 21.07 29.56 -169.99 -5.02 16.05 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 25 C 0.15 3.05 2.76 -67.61 -0.19 2.87 16 26 H 0.02 0.49 7.94 -51.93 -0.41 0.08 16 27 C 0.10 1.84 4.95 -3.95 -0.02 1.82 16 28 N -0.43 -6.83 6.47 -11.03 -0.07 -6.90 16 29 C 0.06 0.78 10.31 -17.05 -0.18 0.61 16 30 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 31 H 0.07 0.46 7.71 -51.93 -0.40 0.06 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.30 6.93 -51.93 -0.36 0.94 16 36 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.06 1.01 8.12 -51.92 -0.42 0.58 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 1.00 7.74 -51.93 -0.40 0.60 16 41 H 0.05 1.34 7.33 -51.93 -0.38 0.96 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.12 2.27 4.22 -62.15 -0.26 2.01 16 45 H 0.18 1.80 6.47 -52.49 -0.34 1.46 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -32.75 358.78 -8.56 -41.31 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.28 Total: 1.43 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -1.89 Total: 14.19 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.67 Total: -64.98 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.11 Total: -13.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.75 -8.56 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042145321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.945 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds