Wall clock time and date at job start Sat Apr 11 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35465 * 116.99948 * 2 1 4 4 N 1.32420 * 119.11764 * 0.02562 * 3 2 1 5 5 C 1.32126 * 120.97845 * 179.97438 * 4 3 2 6 6 C 1.38814 * 119.22120 * 0.02562 * 5 4 3 7 7 C 1.39461 * 118.38529 * 359.97438 * 6 5 4 8 8 C 1.48459 * 120.51867 * 179.97438 * 7 6 5 9 9 O 1.21482 * 119.99391 * 351.25143 * 8 7 6 10 10 N 1.34769 * 120.00480 * 171.24414 * 8 7 6 11 11 C 1.46603 * 119.75560 * 352.55109 * 10 8 7 12 12 C 1.53883 * 110.71462 * 227.74450 * 11 10 8 13 13 C 1.51985 * 107.29046 * 308.18656 * 12 11 10 14 14 H 1.08996 * 111.56609 * 303.14425 * 13 12 11 15 15 C 1.53691 * 114.99797 * 175.43200 * 13 12 11 16 16 C 1.55302 * 101.81650 * 206.54258 * 15 13 12 17 17 N 1.48158 * 107.03945 * 22.44622 * 16 15 13 18 18 C 1.36935 * 126.39666 * 185.02658 * 17 16 15 19 19 H 1.07997 * 120.00120 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00117 * 359.96899 * 18 17 16 21 21 N 1.31619 * 119.99797 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00308 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47168 * 90.00180 * 22 20 18 24 24 H 1.48496 * 109.47431 * 210.00345 * 22 20 18 25 25 H 1.48502 * 109.47065 * 330.00571 * 22 20 18 26 26 C 1.45499 * 107.20234 * 5.00250 * 17 16 15 27 27 H 1.08999 * 109.56895 * 86.62890 * 26 17 16 28 28 C 1.47796 * 119.75592 * 172.54546 * 10 8 7 29 29 N 1.32084 * 119.11200 * 180.23837 * 3 2 1 30 30 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46522 * 299.99307 * 1 2 3 32 32 H 1.08997 * 109.47102 * 59.99271 * 1 2 3 33 33 H 1.08003 * 120.39465 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.80802 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.22832 * 107.42103 * 11 10 8 36 36 H 1.08998 * 109.19288 * 348.04054 * 11 10 8 37 37 H 1.08995 * 109.89172 * 188.74188 * 12 11 10 38 38 H 1.08993 * 109.95328 * 67.66647 * 12 11 10 39 39 H 1.08998 * 110.96093 * 88.41486 * 15 13 12 40 40 H 1.09002 * 110.99458 * 324.68922 * 15 13 12 41 41 H 1.08998 * 109.92132 * 263.09739 * 16 15 13 42 42 H 1.08999 * 110.08670 * 141.88629 * 16 15 13 43 43 H 0.96998 * 119.99768 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.06428 * 9.52896 * 28 10 8 45 45 H 1.09002 * 110.06866 * 247.95959 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3058 2.3063 0.0005 5 6 1.8671 3.5024 0.0010 6 6 3.2517 3.6013 0.0005 7 6 4.0004 2.4247 0.0000 8 6 5.4841 2.4752 -0.0012 9 8 6.0555 3.5351 -0.1617 10 7 6.1970 1.3453 0.1760 11 6 5.5102 0.0998 0.5316 12 6 6.2168 -0.5942 1.7094 13 6 7.6888 -0.7091 1.3489 14 1 7.8308 -1.2464 0.4113 15 6 8.5860 -1.2826 2.4571 16 6 9.9619 -0.6510 2.1110 17 7 9.6922 0.5610 1.3026 18 6 10.6270 1.3646 0.7063 19 1 10.3135 2.2271 0.1371 20 6 11.9777 1.0706 0.8335 21 7 12.3598 0.0191 1.5270 22 14 13.2529 2.1671 0.0207 23 1 13.6529 3.2433 0.9625 24 1 14.4442 1.3573 -0.3404 25 1 12.6754 2.7724 -1.2062 26 6 8.2486 0.7376 1.2603 27 1 7.9248 1.3078 2.1310 28 6 7.6654 1.3709 0.0102 29 7 3.3640 1.2557 -0.0048 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.2559 4.3929 0.0010 34 1 3.7374 4.5659 0.0005 35 1 5.5086 -0.5679 -0.3300 36 1 4.4816 0.3255 0.8127 37 1 5.7939 -1.5870 1.8626 38 1 6.1022 0.0014 2.6150 39 1 8.6306 -2.3701 2.3989 40 1 8.2455 -0.9604 3.4411 41 1 10.5600 -1.3565 1.5343 42 1 10.4890 -0.3779 3.0252 43 1 13.3036 -0.1865 1.6156 44 1 8.0131 2.3995 -0.0850 45 1 7.9526 0.7949 -0.8696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042148450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:26 Heat of formation + Delta-G solvation = 45.227987 kcal Electronic energy + Delta-G solvation = -29161.467941 eV Core-core repulsion = 25182.005580 eV Total energy + Delta-G solvation = -3979.462361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80135 -40.05450 -38.71702 -38.02878 -35.55252 -34.26615 -32.85173 -31.83584 -31.16504 -29.50833 -28.43049 -27.89720 -25.95158 -24.58031 -24.32076 -23.27761 -22.13278 -20.71127 -19.98033 -19.41443 -18.56587 -18.21295 -16.92899 -16.84955 -16.43459 -16.02547 -15.67557 -15.26674 -14.99984 -14.68206 -14.49612 -14.33668 -13.99358 -13.88237 -13.60746 -13.34235 -12.90490 -12.62723 -12.44625 -12.20411 -11.86363 -11.74453 -11.60282 -11.50781 -11.28686 -11.08789 -10.81637 -10.76613 -10.62823 -10.37053 -10.10862 -9.93591 -9.85956 -9.62468 -9.45863 -9.43921 -8.97530 -8.59702 -8.41333 -6.82329 -5.68909 -3.02549 0.19783 0.61186 2.09868 2.65421 2.92728 3.43816 3.48565 3.49291 3.50831 3.57657 4.08051 4.20908 4.53794 4.55697 4.81629 4.87060 4.87854 5.09605 5.18163 5.19700 5.20765 5.32639 5.49509 5.60008 5.68715 5.78850 5.84342 5.91974 5.99645 6.14243 6.15621 6.20187 6.29651 6.38270 6.39785 6.55496 6.62645 6.68968 6.76511 6.81877 7.10824 7.45220 7.57394 7.59143 7.64971 7.84618 8.10103 8.26549 9.22040 9.85015 10.52199 11.43440 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.003088 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.362186 B = 9063.886253 C =10186.595610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.287 6.287 3 C 0.492 3.508 4 N -0.559 5.559 5 C 0.191 3.809 6 C -0.210 4.210 7 C 0.179 3.821 8 C 0.561 3.439 9 O -0.524 6.524 10 N -0.576 5.576 11 C 0.081 3.919 12 C -0.120 4.120 13 C -0.113 4.113 14 H 0.077 0.923 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.592 5.592 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.157 3.843 27 H 0.024 0.976 28 C 0.112 3.888 29 N -0.490 5.490 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.182 0.818 34 H 0.166 0.834 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.310 0.536 -1.674 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.187 6.187 3 C 0.190 3.810 4 N -0.288 5.288 5 C 0.024 3.976 6 C -0.234 4.234 7 C 0.032 3.968 8 C 0.345 3.655 9 O -0.399 6.399 10 N -0.307 5.307 11 C -0.041 4.041 12 C -0.158 4.158 13 C -0.133 4.133 14 H 0.096 0.904 15 C -0.176 4.176 16 C 0.053 3.947 17 N -0.317 5.317 18 C -0.356 4.356 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.048 3.952 27 H 0.041 0.959 28 C -0.010 4.010 29 N -0.219 5.219 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.198 0.802 34 H 0.183 0.817 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.100 -0.135 -1.799 25.165 hybrid contribution 0.936 1.291 -0.366 1.636 sum -24.164 1.156 -2.164 24.288 Atomic orbital electron populations 1.23028 0.75486 1.03762 1.02862 1.86127 1.23488 1.22236 1.86896 1.20894 0.86116 0.84987 0.89024 1.67992 1.41655 0.99432 1.19739 1.23093 0.92202 0.94457 0.87837 1.22818 0.95490 1.01161 1.03898 1.21705 0.95352 0.88001 0.91759 1.17763 0.84347 0.84525 0.78850 1.90815 1.69770 1.28960 1.50382 1.48233 1.08266 1.08992 1.65194 1.22838 0.98859 0.84715 0.97735 1.21838 0.95824 1.00281 0.97900 1.22290 0.93085 0.98374 0.99514 0.90437 1.22725 0.98403 0.99297 0.97223 1.21543 0.90416 0.87741 0.94987 1.44178 0.98406 1.29103 1.60012 1.19048 0.85979 1.04926 1.25629 0.90258 1.24784 0.96930 0.98165 1.00424 1.69948 1.14783 1.27613 1.44557 0.86139 0.81272 0.79527 0.78999 1.21610 1.21734 1.20582 1.20971 0.86515 0.93357 0.94394 0.95862 1.21901 0.75887 1.03602 0.99592 1.67968 1.07147 1.27989 1.18806 0.87679 0.91802 0.91830 0.80152 0.81686 0.91696 0.84989 0.90899 0.91867 0.92245 0.92623 0.92658 0.94432 0.93782 0.88797 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.36 101.05 1.05 1.32 16 2 O -0.29 -2.97 10.56 -18.09 -0.19 -3.16 16 3 C 0.49 5.66 8.48 -91.37 -0.77 4.88 16 4 N -0.56 -5.47 9.20 -14.74 -0.14 -5.61 16 5 C 0.19 1.50 11.30 -17.21 -0.19 1.31 16 6 C -0.21 -2.12 9.71 -38.91 -0.38 -2.49 16 7 C 0.18 2.36 6.57 -82.65 -0.54 1.81 16 8 C 0.56 9.17 7.65 -12.05 -0.09 9.08 16 9 O -0.52 -9.88 15.83 5.38 0.09 -9.80 16 10 N -0.58 -9.58 3.01 -173.61 -0.52 -10.10 16 11 C 0.08 1.16 5.66 -3.53 -0.02 1.14 16 12 C -0.12 -1.73 5.72 -26.79 -0.15 -1.88 16 13 C -0.11 -2.01 2.61 -89.52 -0.23 -2.24 16 14 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 15 C -0.14 -2.60 6.54 -25.15 -0.16 -2.76 16 16 C 0.18 4.32 5.45 -1.91 -0.01 4.31 16 17 N -0.59 -15.13 3.35 -162.91 -0.55 -15.67 16 18 C -0.23 -6.35 9.88 -15.06 -0.15 -6.50 16 19 H 0.08 2.16 7.41 -52.49 -0.39 1.77 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -27.21 10.43 55.49 0.58 -26.63 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.16 3.31 2.76 -67.82 -0.19 3.12 16 27 H 0.02 0.54 7.93 -51.93 -0.41 0.13 16 28 C 0.11 2.18 5.71 -3.95 -0.02 2.16 16 29 N -0.49 -6.31 6.30 -11.29 -0.07 -6.39 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.17 1.48 7.75 -52.49 -0.41 1.07 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.13 1.82 4.18 -78.24 -0.33 1.49 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.94 7.98 -51.93 -0.41 0.52 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16 42 H 0.04 1.01 7.76 -51.93 -0.40 0.60 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.09 2.00 6.74 -51.93 -0.35 1.65 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -33.14 359.92 -8.81 -41.95 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.43 Total: -0.40 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -1.97 Total: 12.96 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.70 Total: -64.39 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.11 Total: -12.96 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.14 -8.81 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.173 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds