Wall clock time and date at job start Sat Apr 11 2020 03:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35292 * 116.99500 * 2 1 4 4 N 1.32474 * 119.02047 * 179.97438 * 3 2 1 5 5 C 1.32018 * 120.91342 * 179.97438 * 4 3 2 6 6 C 1.40053 * 118.99362 * 0.02562 * 5 4 3 7 7 C 1.47624 * 120.88503 * 179.97438 * 6 5 4 8 8 O 1.21574 * 119.99836 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00002 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00204 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.32133 * 34.64094 * 10 9 7 12 12 C 1.53024 * 109.32591 * 154.11045 * 10 9 7 13 13 C 1.53969 * 108.82420 * 175.68003 * 12 10 9 14 14 H 1.08998 * 112.99446 * 169.00502 * 13 12 10 15 15 C 1.55433 * 106.41782 * 293.81862 * 13 12 10 16 16 C 1.55170 * 100.35011 * 73.37896 * 15 13 12 17 17 H 1.09001 * 112.47946 * 163.35646 * 16 15 13 18 18 C 1.52986 * 109.32415 * 275.00223 * 10 9 7 19 19 N 1.47789 * 104.25742 * 40.55394 * 16 15 13 20 20 C 1.36933 * 125.85933 * 153.53446 * 19 16 15 21 21 H 1.08001 * 119.99558 * 0.02562 * 20 19 16 22 22 C 1.38813 * 120.00246 * 180.02562 * 20 19 16 23 23 N 1.31616 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46903 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47071 * 119.99562 * 24 22 20 27 27 H 1.48500 * 109.46693 * 240.00004 * 24 22 20 28 28 C 1.49342 * 108.53981 * 333.48447 * 19 16 15 29 29 C 1.40061 * 118.23189 * 0.25618 * 6 5 4 30 30 N 1.32023 * 118.98859 * 359.48189 * 29 6 5 31 31 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47642 * 299.99656 * 1 2 3 33 33 H 1.08998 * 109.47797 * 60.00061 * 1 2 3 34 34 H 1.08004 * 120.49926 * 179.97438 * 5 4 3 35 35 H 0.97000 * 119.99590 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.58047 * 295.48068 * 12 10 9 37 37 H 1.09003 * 109.58117 * 55.87701 * 12 10 9 38 38 H 1.09002 * 111.23038 * 315.60721 * 15 13 12 39 39 H 1.08994 * 111.23461 * 191.15616 * 15 13 12 40 40 H 1.08999 * 109.53263 * 64.75348 * 18 10 9 41 41 H 1.08996 * 109.53300 * 304.52434 * 18 10 9 42 42 H 0.96995 * 119.99915 * 180.02562 * 23 22 20 43 43 H 1.08999 * 110.79695 * 242.03171 * 28 19 16 44 44 H 1.09002 * 110.29229 * 120.03903 * 28 19 16 45 45 H 1.08001 * 120.50806 * 179.72758 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2055 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0048 2.4082 0.0000 6 6 3.2602 3.5944 -0.0005 7 6 3.9303 4.9098 -0.0005 8 8 5.1444 4.9735 -0.0005 9 7 3.1962 6.0401 -0.0005 10 6 3.8611 7.3455 0.0001 11 1 4.7791 7.2828 -0.5843 12 6 2.9337 8.3865 -0.6305 13 6 3.5977 9.7717 -0.5259 14 1 3.0901 10.5331 -1.1181 15 6 3.6604 10.1156 0.9887 16 6 4.7943 9.1596 1.4449 17 1 5.2047 9.4338 2.4168 18 6 4.2025 7.7391 1.4385 19 7 5.7907 9.2310 0.3559 20 6 7.1349 9.0020 0.4822 21 1 7.5503 8.7425 1.4448 22 6 7.9635 9.1034 -0.6269 23 7 7.4572 9.4192 -1.8000 24 14 9.7971 8.7903 -0.4546 25 1 10.1113 8.4543 0.9574 26 1 10.1906 7.6591 -1.3324 27 1 10.5467 10.0091 -0.8516 28 6 5.0859 9.5944 -0.9096 29 6 1.8628 3.4995 0.0050 30 7 1.3027 2.3040 0.0001 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 5.0844 2.4386 0.0009 35 1 2.2275 5.9892 -0.0001 36 1 2.7669 8.1398 -1.6790 37 1 1.9816 8.3968 -0.0998 38 1 2.7200 9.8787 1.4864 39 1 3.9360 11.1584 1.1456 40 1 4.9322 7.0385 1.8446 41 1 3.2981 7.7183 2.0465 42 1 8.0361 9.4897 -2.5750 43 1 5.1874 8.8014 -1.6506 44 1 5.4816 10.5287 -1.3079 45 1 1.2527 4.3907 0.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047173711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:54 Heat of formation + Delta-G solvation = 23.628074 kcal Electronic energy + Delta-G solvation = -28927.536732 eV Core-core repulsion = 24947.137728 eV Total energy + Delta-G solvation = -3980.399003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64246 -40.06164 -38.97978 -38.13201 -34.80009 -34.12010 -32.84981 -31.95826 -30.69927 -29.53057 -28.38495 -27.81193 -25.29264 -25.03848 -24.52048 -23.13711 -21.93471 -20.52464 -19.49093 -19.19891 -18.83190 -18.31125 -17.53253 -16.87343 -16.79515 -15.82624 -15.36677 -14.93856 -14.92581 -14.72046 -14.44205 -14.22619 -13.90713 -13.68383 -13.53949 -13.01084 -12.77549 -12.40920 -12.08233 -12.07609 -11.82698 -11.79729 -11.66948 -11.56537 -11.28640 -11.20846 -10.70983 -10.67021 -10.55852 -9.98380 -9.91402 -9.77695 -9.73084 -9.60166 -9.49829 -9.37908 -9.32157 -8.67427 -8.54586 -6.77698 -5.62840 -2.94636 0.29765 0.68910 2.17252 2.87531 3.21612 3.48122 3.54285 3.55904 3.57690 3.61929 4.13609 4.33095 4.56819 4.58474 4.81267 4.82193 4.86403 5.13243 5.18288 5.22065 5.31426 5.40446 5.54157 5.63175 5.74088 5.86778 5.87290 6.02222 6.04723 6.05991 6.10505 6.20361 6.28830 6.54750 6.59624 6.63490 6.68652 6.81361 6.85934 6.96894 7.02523 7.58788 7.62169 7.63556 7.69874 7.88032 8.28071 8.38440 9.26947 9.89565 10.55115 11.49709 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.003109 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.924559 B = 9004.853658 C =10233.804482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.286 6.286 3 C 0.510 3.490 4 N -0.525 5.525 5 C 0.248 3.752 6 C -0.273 4.273 7 C 0.564 3.436 8 O -0.511 6.511 9 N -0.721 5.721 10 C 0.147 3.853 11 H 0.118 0.882 12 C -0.112 4.112 13 C -0.120 4.120 14 H 0.081 0.919 15 C -0.128 4.128 16 C 0.160 3.840 17 H 0.065 0.935 18 C -0.136 4.136 19 N -0.598 5.598 20 C -0.218 4.218 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.924 5.924 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.182 3.818 29 C 0.220 3.780 30 N -0.571 5.571 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.193 0.807 35 H 0.388 0.612 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.355 -10.555 3.461 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.186 6.186 3 C 0.209 3.791 4 N -0.249 5.249 5 C 0.081 3.919 6 C -0.281 4.281 7 C 0.348 3.652 8 O -0.387 6.387 9 N -0.371 5.371 10 C 0.044 3.956 11 H 0.136 0.864 12 C -0.150 4.150 13 C -0.139 4.139 14 H 0.099 0.901 15 C -0.167 4.167 16 C 0.051 3.949 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.323 5.323 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.220 1.220 28 C 0.058 3.942 29 C 0.053 3.947 30 N -0.300 5.300 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.210 0.790 35 H 0.221 0.779 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.681 -11.768 3.308 21.495 hybrid contribution 0.549 0.613 -0.001 0.823 sum -17.131 -11.155 3.307 20.709 Atomic orbital electron populations 1.23057 0.75352 1.03787 1.03095 1.86078 1.23659 1.22637 1.86276 1.20974 0.86419 0.84827 0.86883 1.67764 1.07190 1.30042 1.19955 1.23464 1.01463 0.84167 0.82839 1.21793 0.96052 0.97342 1.12929 1.17586 0.87131 0.82956 0.77554 1.90919 1.12787 1.86752 1.48204 1.46120 1.09307 1.06573 1.75121 1.21264 0.97310 0.78844 0.98152 0.86387 1.21975 0.97423 0.95613 1.00025 1.22843 0.99838 0.94711 0.96557 0.90098 1.22986 0.98107 0.99694 0.95866 1.21451 0.89201 0.91272 0.92979 0.91678 1.22629 0.99268 1.00644 0.95220 1.45155 1.02754 1.81472 1.02906 1.19068 0.81355 1.39452 0.94810 0.90600 1.24714 0.97941 1.02099 0.95585 1.69925 1.33338 1.55008 0.98928 0.86085 0.85448 0.77232 0.77275 1.20610 1.21830 1.22043 1.21690 0.84289 0.99897 0.88322 1.23172 0.91475 0.94546 0.85508 1.68052 1.41050 0.99040 1.21857 0.87678 0.91653 0.91633 0.79040 0.77872 0.92080 0.92772 0.92236 0.91862 0.92169 0.93803 0.93986 0.93289 0.93539 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.35 101.05 1.05 1.33 16 2 O -0.29 -3.17 10.55 -17.57 -0.19 -3.36 16 3 C 0.51 6.34 8.48 -90.98 -0.77 5.56 16 4 N -0.52 -7.07 10.45 -14.39 -0.15 -7.22 16 5 C 0.25 3.17 10.87 -16.79 -0.18 2.99 16 6 C -0.27 -3.36 5.90 -104.70 -0.62 -3.98 16 7 C 0.56 8.71 7.74 -12.43 -0.10 8.61 16 8 O -0.51 -10.51 16.09 5.30 0.09 -10.43 16 9 N -0.72 -9.76 5.02 -54.82 -0.28 -10.04 16 10 C 0.15 2.51 2.08 -67.93 -0.14 2.37 16 11 H 0.12 2.71 5.39 -51.93 -0.28 2.43 16 12 C -0.11 -1.64 4.94 -26.21 -0.13 -1.77 16 13 C -0.12 -2.03 4.27 -87.92 -0.38 -2.41 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -2.08 6.19 -24.29 -0.15 -2.23 16 16 C 0.16 3.11 4.30 -65.61 -0.28 2.83 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 18 C -0.14 -2.41 5.28 -26.28 -0.14 -2.55 16 19 N -0.60 -14.56 2.46 -159.53 -0.39 -14.96 16 20 C -0.22 -6.06 10.30 -15.06 -0.16 -6.21 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -27.11 10.35 55.49 0.57 -26.53 16 24 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C 0.18 4.18 4.18 -1.56 -0.01 4.18 16 29 C 0.22 2.17 10.81 -16.79 -0.18 1.99 16 30 N -0.57 -6.22 9.19 -14.39 -0.13 -6.36 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.19 2.31 7.74 -52.48 -0.41 1.90 16 35 H 0.39 3.65 6.73 -40.82 -0.27 3.38 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.64 7.97 -51.93 -0.41 0.22 16 38 H 0.06 0.81 7.75 -51.93 -0.40 0.40 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 1.26 6.25 -51.93 -0.32 0.93 16 44 H 0.05 1.21 7.43 -51.93 -0.39 0.82 16 45 H 0.18 1.08 6.53 -52.49 -0.34 0.74 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -34.17 361.10 -8.50 -42.68 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.17 Total: 2.57 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.28 Total: 10.40 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.38 Total: -65.10 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.10 Total: -13.78 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.17 -8.50 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047173711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.306 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds