Wall clock time and date at job start Sat Apr 11 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34768 * 120.00268 * 2 1 4 4 O 1.21552 * 120.00157 * 185.25481 * 3 2 1 5 5 C 1.47830 * 120.00087 * 5.25743 * 3 2 1 6 6 C 1.39973 * 120.93767 * 45.10085 * 5 3 2 7 7 N 1.32135 * 118.92029 * 179.71690 * 6 5 3 8 8 C 1.31884 * 120.96756 * 0.57611 * 7 6 5 9 9 N 1.31859 * 122.09273 * 359.69717 * 8 7 6 10 10 C 1.32160 * 120.97089 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.53733 * 179.97438 * 10 9 8 12 12 C 1.52997 * 117.49824 * 0.88344 * 11 10 9 13 13 C 1.53005 * 117.49817 * 292.22190 * 11 10 9 14 14 C 1.46502 * 119.99665 * 180.02562 * 2 1 3 15 15 H 1.09002 * 110.88467 * 183.87730 * 14 2 1 16 16 C 1.54910 * 111.00708 * 307.80730 * 14 2 1 17 17 N 1.47743 * 104.84453 * 155.17106 * 16 14 2 18 18 C 1.36937 * 125.82505 * 155.82863 * 17 16 14 19 19 H 1.07995 * 120.00003 * 359.92583 * 18 17 16 20 20 C 1.38811 * 119.99786 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00389 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99750 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47367 * 59.99920 * 22 20 18 24 24 H 1.48502 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47422 * 299.99867 * 22 20 18 26 26 C 1.47024 * 108.52837 * 335.74778 * 17 16 14 27 27 C 1.54324 * 107.40306 * 1.18148 * 26 17 16 28 28 H 1.08996 * 110.72302 * 263.75868 * 27 26 17 29 29 O 1.42901 * 110.72407 * 140.65670 * 27 26 17 30 30 H 1.09003 * 109.47208 * 270.15916 * 1 2 3 31 31 H 1.08997 * 109.47428 * 30.15862 * 1 2 3 32 32 H 1.08998 * 109.47322 * 150.15966 * 1 2 3 33 33 H 1.07997 * 120.54137 * 359.97438 * 6 5 3 34 34 H 1.08001 * 118.95662 * 179.67973 * 8 7 6 35 35 H 1.08997 * 115.55018 * 146.55158 * 11 10 9 36 36 H 1.09006 * 117.50085 * 359.97438 * 12 11 10 37 37 H 1.08995 * 117.50302 * 145.02535 * 12 11 10 38 38 H 1.08993 * 117.49690 * 214.97966 * 13 11 10 39 39 H 1.09001 * 117.49944 * 359.97438 * 13 11 10 40 40 H 1.09002 * 110.36269 * 273.91972 * 16 14 2 41 41 H 1.08992 * 110.36965 * 36.13010 * 16 14 2 42 42 H 0.96997 * 120.00340 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.88421 * 241.69133 * 26 17 16 44 44 H 1.08993 * 109.88518 * 120.67445 * 26 17 16 45 45 H 0.96696 * 113.99666 * 61.45544 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3506 1.1693 -0.0964 5 6 1.4045 2.4447 0.1173 6 6 0.3821 2.6031 1.0601 7 7 -0.2444 3.7641 1.1344 8 6 0.0737 4.7595 0.3299 9 7 1.0260 4.6515 -0.5757 10 6 1.7075 3.5277 -0.7153 11 6 2.7935 3.4148 -1.7539 12 6 3.0812 4.6482 -2.6122 13 6 2.3702 3.4385 -3.2241 14 6 2.1974 -1.2688 -0.0006 15 1 3.2716 -1.0974 0.0684 16 6 1.7073 -2.1934 1.1416 17 7 2.0288 -3.5614 0.6854 18 6 2.2210 -4.6510 1.4924 19 1 2.1417 -4.5495 2.5646 20 6 2.5187 -5.8856 0.9322 21 7 2.6158 -6.0092 -0.3746 22 14 2.7816 -7.3717 2.0330 23 1 1.5514 -7.6246 2.8255 24 1 3.0837 -8.5606 1.1959 25 1 3.9182 -7.1117 2.9527 26 6 2.1062 -3.5583 -0.7828 27 6 1.8482 -2.1120 -1.2555 28 1 0.8025 -1.9773 -1.5317 29 8 2.7053 -1.7768 -2.3487 30 1 -0.3634 0.0029 1.0277 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3634 -0.8914 -0.5113 33 1 0.1124 1.7909 1.7189 34 1 -0.4630 5.6929 0.4153 35 1 3.6385 2.7815 -1.4836 36 1 2.4846 5.5413 -2.4259 37 1 4.1153 4.8262 -2.9070 38 1 2.9370 2.8211 -3.9209 39 1 1.3062 3.5353 -3.4400 40 1 2.2390 -1.9686 2.0662 41 1 0.6328 -2.0813 1.2859 42 1 2.8242 -6.8719 -0.7660 43 1 1.3480 -4.2239 -1.1954 44 1 3.0968 -3.8815 -1.1025 45 1 2.5772 -2.3286 -3.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047613576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:10 Heat of formation + Delta-G solvation = 38.402987 kcal Electronic energy + Delta-G solvation = -29194.448091 eV Core-core repulsion = 25214.689776 eV Total energy + Delta-G solvation = -3979.758315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64083 -39.73832 -37.92402 -37.39472 -35.34211 -34.87543 -33.64805 -32.61739 -31.68126 -28.67901 -27.47739 -26.96691 -25.67706 -25.37676 -24.20431 -22.51971 -21.47558 -21.10417 -20.49927 -19.25242 -18.24283 -17.51238 -17.20239 -17.07907 -16.69438 -16.07124 -15.63863 -15.21456 -14.83707 -14.71773 -14.35737 -14.22225 -14.05713 -13.95430 -13.24368 -13.01971 -12.75988 -12.54583 -12.33693 -12.22814 -12.01203 -11.90757 -11.73948 -11.52461 -11.44314 -11.28766 -10.94238 -10.83308 -10.71067 -10.48189 -10.23160 -10.04266 -9.88251 -9.82925 -9.57402 -9.57240 -9.33726 -8.77637 -8.48931 -6.98973 -5.81873 -3.17479 0.28137 0.69494 2.59266 2.88969 3.30642 3.35880 3.40404 3.41343 3.61015 3.77358 3.81218 4.04494 4.27016 4.40685 4.61370 4.63233 4.78192 4.81181 4.87226 4.97285 5.08442 5.14293 5.29539 5.40923 5.46615 5.49226 5.51555 5.54152 5.66995 5.68285 5.81381 5.93058 5.94693 5.98758 6.02540 6.07477 6.38456 6.47576 6.59336 6.75384 7.28323 7.36025 7.41816 7.67338 7.71115 8.07989 8.12531 8.14503 9.08105 9.68139 10.30954 11.29394 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.003024 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.845379 B = 9257.424849 C =10051.841200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.591 5.591 3 C 0.572 3.428 4 O -0.519 6.519 5 C -0.225 4.225 6 C 0.183 3.817 7 N -0.525 5.525 8 C 0.310 3.690 9 N -0.521 5.521 10 C 0.259 3.741 11 C -0.136 4.136 12 C -0.154 4.154 13 C -0.152 4.152 14 C 0.134 3.866 15 H 0.117 0.883 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.922 5.922 22 Si 0.916 3.084 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.152 3.848 27 C 0.066 3.934 28 H 0.055 0.945 29 O -0.560 6.560 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.176 0.824 34 H 0.200 0.800 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 19.244 -3.729 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.323 5.323 3 C 0.358 3.642 4 O -0.395 6.395 5 C -0.233 4.233 6 C 0.016 3.984 7 N -0.239 5.239 8 C 0.023 3.977 9 N -0.235 5.235 10 C 0.113 3.887 11 C -0.155 4.155 12 C -0.191 4.191 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.135 0.865 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.361 4.361 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.569 5.569 22 Si 0.746 3.254 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.026 3.974 27 C 0.005 3.995 28 H 0.073 0.927 29 O -0.364 6.364 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.217 0.783 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.001 20.314 -3.291 21.436 hybrid contribution 0.101 -2.113 0.202 2.125 sum -5.899 18.201 -3.089 19.381 Atomic orbital electron populations 1.21938 0.79835 1.03335 1.02055 1.47637 1.06801 1.05696 1.72178 1.17731 0.86924 0.82628 0.76922 1.90767 1.13292 1.86561 1.48917 1.21569 1.01591 0.97602 1.02502 1.23623 0.87186 0.94876 0.92672 1.68470 1.28932 1.00950 1.25565 1.25158 0.89779 0.97468 0.85291 1.68228 1.08300 1.25077 1.21896 1.20863 0.90659 0.86456 0.90758 1.21350 0.99014 1.05219 0.89916 1.22980 1.01891 0.92622 1.01580 1.22967 1.01451 1.01759 0.92864 1.22479 0.98463 0.80758 0.95225 0.86507 1.21825 0.97506 0.85549 0.94704 1.44282 1.83339 1.03162 1.01817 1.19016 1.41889 0.85737 0.89415 0.90142 1.24820 1.01469 0.97780 0.96076 1.69913 1.54520 1.23818 1.08655 0.86145 0.78106 0.81948 0.79219 1.21068 1.21524 1.21003 1.21862 1.02002 0.89085 0.84437 1.23542 0.92093 0.97261 0.86575 0.92726 1.86493 1.63383 1.61299 1.25256 0.91897 0.91736 0.89939 0.80660 0.78311 0.83546 0.87378 0.88197 0.87682 0.88835 0.93218 0.95494 0.93517 0.93404 0.92089 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 7.65 59.85 0.46 1.25 16 2 N -0.59 -8.74 2.91 -172.59 -0.50 -9.24 16 3 C 0.57 8.87 6.89 -12.34 -0.09 8.78 16 4 O -0.52 -9.78 14.29 5.32 0.08 -9.70 16 5 C -0.23 -2.90 4.83 -104.69 -0.51 -3.41 16 6 C 0.18 1.99 9.23 -16.77 -0.15 1.84 16 7 N -0.53 -5.61 10.42 -14.24 -0.15 -5.76 16 8 C 0.31 3.00 12.27 -92.02 -1.13 1.87 16 9 N -0.52 -5.91 9.44 -10.48 -0.10 -6.01 16 10 C 0.26 3.28 6.53 -81.82 -0.53 2.74 16 11 C -0.14 -1.68 5.42 -91.77 -0.50 -2.18 16 12 C -0.15 -1.50 10.05 -26.69 -0.27 -1.77 16 13 C -0.15 -1.57 10.24 -26.69 -0.27 -1.84 16 14 C 0.13 2.45 3.17 -65.77 -0.21 2.24 16 15 H 0.12 2.48 7.04 -51.93 -0.37 2.11 16 16 C 0.13 2.58 6.81 -2.35 -0.02 2.56 16 17 N -0.60 -14.65 3.41 -169.82 -0.58 -15.23 16 18 C -0.23 -6.27 10.29 -15.06 -0.15 -6.42 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.15 10.31 55.49 0.57 -25.58 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.51 5.14 -3.06 -0.02 3.49 16 27 C 0.07 1.21 3.88 -24.89 -0.10 1.11 16 28 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 29 O -0.56 -10.04 13.40 -35.23 -0.47 -10.52 16 30 H 0.06 0.58 7.05 -51.93 -0.37 0.21 16 31 H 0.06 0.63 6.46 -51.93 -0.34 0.30 16 32 H 0.08 0.94 6.42 -51.93 -0.33 0.60 16 33 H 0.18 1.56 6.49 -52.49 -0.34 1.22 16 34 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.15 2.12 6.12 -51.93 -0.32 1.80 16 36 H 0.11 1.04 7.58 -51.93 -0.39 0.64 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.49 7.00 -51.93 -0.36 0.13 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 44 H 0.06 1.61 7.28 -51.93 -0.38 1.23 16 45 H 0.37 5.21 9.11 45.56 0.42 5.63 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -32.93 364.17 -9.43 -42.36 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.16 Total: 7.61 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -3.58 Total: 10.06 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.76 Total: -61.82 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.40 Total: -20.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.93 -9.43 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047613576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.761 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds