Wall clock time and date at job start Sat Apr 11 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35507 * 117.00047 * 2 1 4 4 C 1.39646 * 120.49297 * 180.02562 * 3 2 1 5 5 C 1.39146 * 118.20748 * 179.97438 * 4 3 2 6 6 C 1.48447 * 120.51818 * 180.02562 * 5 4 3 7 7 O 1.21490 * 119.99807 * 15.33375 * 6 5 4 8 8 N 1.34770 * 120.00217 * 195.33943 * 6 5 4 9 9 C 1.46795 * 119.57886 * 179.97438 * 8 6 5 10 10 C 1.53463 * 107.59630 * 232.07144 * 9 8 6 11 11 C 1.52736 * 108.44185 * 301.92388 * 10 9 8 12 12 C 1.53012 * 110.80495 * 63.76451 * 11 10 9 13 13 H 1.09004 * 111.38417 * 68.76336 * 12 11 10 14 14 C 1.45126 * 119.57568 * 0.02562 * 8 6 5 15 15 H 1.08997 * 109.96909 * 11.90653 * 14 8 6 16 16 C 1.54421 * 111.60483 * 248.62619 * 14 8 6 17 17 C 1.54564 * 102.44869 * 203.41662 * 16 14 8 18 18 N 1.47125 * 107.25009 * 21.67740 * 17 16 14 19 19 C 1.36931 * 125.76463 * 182.61628 * 18 17 16 20 20 H 1.08007 * 120.00340 * 179.97438 * 19 18 17 21 21 C 1.38818 * 120.00123 * 359.97157 * 19 18 17 22 22 N 1.31611 * 120.00230 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47056 * 89.99905 * 23 21 19 25 25 H 1.48498 * 109.46933 * 210.00498 * 23 21 19 26 26 H 1.48502 * 109.46774 * 330.00204 * 23 21 19 27 27 N 1.33280 * 118.96451 * 0.26582 * 5 4 3 28 28 C 1.31526 * 120.88401 * 359.44478 * 27 5 4 29 29 N 1.31892 * 121.99129 * 0.57813 * 28 27 5 30 30 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46819 * 300.00202 * 1 2 3 32 32 H 1.08997 * 109.46674 * 59.99648 * 1 2 3 33 33 H 1.07998 * 120.89187 * 359.95179 * 4 3 2 34 34 H 1.09000 * 109.83591 * 351.59893 * 9 8 6 35 35 H 1.09008 * 109.83554 * 112.48527 * 9 8 6 36 36 H 1.09001 * 109.63770 * 61.60514 * 10 9 8 37 37 H 1.09000 * 109.64478 * 182.02392 * 10 9 8 38 38 H 1.08995 * 109.20947 * 303.42098 * 11 10 9 39 39 H 1.09000 * 109.20985 * 184.10691 * 11 10 9 40 40 H 1.09004 * 110.81304 * 321.65854 * 16 14 8 41 41 H 1.09011 * 110.81342 * 84.98258 * 16 14 8 42 42 H 1.09001 * 109.88697 * 141.08497 * 17 16 14 43 43 H 1.09002 * 109.88831 * 262.26456 * 17 16 14 44 44 H 0.96998 * 120.00619 * 180.02562 * 22 21 19 45 45 H 1.08002 * 119.00835 * 180.26456 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4381 1.2924 -0.0005 5 6 4.0199 2.5564 -0.0011 6 6 5.4967 2.7065 -0.0022 7 8 6.2034 1.7584 -0.2809 8 7 6.0536 3.8945 0.3060 9 6 7.5151 4.0323 0.3026 10 6 7.9273 4.6359 1.6520 11 6 7.2144 5.9762 1.8197 12 6 5.6982 5.7810 1.8836 13 1 5.4007 5.2770 2.8032 14 6 5.2008 5.0207 0.6382 15 1 4.1773 4.6795 0.7938 16 6 5.2524 6.1138 -0.4512 17 6 4.8276 7.3800 0.3268 18 7 5.0803 7.1211 1.7529 19 6 4.7922 7.9742 2.7844 20 1 5.0179 7.6880 3.8011 21 6 4.2101 9.2072 2.5236 22 7 3.9346 9.5560 1.2848 23 14 3.8177 10.3713 3.9309 24 1 4.9847 11.2543 4.1829 25 1 2.6381 11.1997 3.5738 26 1 3.5184 9.5852 5.1547 27 7 3.2305 3.6303 0.0044 28 6 1.9211 3.5057 -0.0008 29 7 1.3315 2.3260 -0.0002 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 4.0480 0.4012 -0.0002 34 1 7.9786 3.0537 0.1780 35 1 7.8224 4.6928 -0.5084 36 1 7.6366 3.9628 2.4585 37 1 9.0067 4.7865 1.6716 38 1 7.4579 6.6202 0.9747 39 1 7.5542 6.4503 2.7405 40 1 6.2635 6.2217 -0.8441 41 1 4.5482 5.8943 -1.2539 42 1 5.4174 8.2345 -0.0051 43 1 3.7670 7.5746 0.1675 44 1 3.5282 10.4176 1.1024 45 1 1.3103 4.3964 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049478642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:13 Heat of formation + Delta-G solvation = 38.276165 kcal Electronic energy + Delta-G solvation = -29728.182220 eV Core-core repulsion = 25748.418405 eV Total energy + Delta-G solvation = -3979.763814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66521 -40.16938 -38.67200 -38.07244 -35.00625 -33.92701 -32.35162 -32.04858 -32.00358 -28.98729 -28.27722 -27.90525 -25.69075 -24.61834 -24.28732 -23.71224 -21.95759 -20.91014 -19.95725 -19.22061 -18.51621 -17.78818 -16.94669 -16.55474 -16.37491 -15.79057 -15.65150 -15.22231 -15.11413 -14.72552 -14.68003 -14.28350 -14.04296 -13.80862 -13.61948 -13.30828 -12.83694 -12.49332 -12.40976 -12.15205 -11.92025 -11.78469 -11.43503 -11.04503 -10.92904 -10.87232 -10.78676 -10.59283 -10.54568 -10.46974 -10.28555 -10.06505 -10.03156 -9.83587 -9.60161 -9.41545 -8.66154 -8.59906 -8.28314 -6.83091 -5.70046 -3.03472 0.36679 0.80642 2.45825 2.70723 3.06387 3.39880 3.45440 3.46785 3.62725 3.80795 3.86989 4.38910 4.51949 4.75255 4.88988 4.98373 5.00882 5.17252 5.26760 5.28177 5.34680 5.42033 5.47938 5.56014 5.64088 5.69765 5.76396 5.85793 6.08994 6.13484 6.20929 6.34676 6.36533 6.41504 6.49505 6.61424 6.63131 6.79127 6.93304 6.95528 7.13172 7.56081 7.58191 7.66786 7.77574 7.85083 8.12759 8.26008 9.22437 9.82065 10.48922 11.40883 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004069 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.387923 B = 6880.308619 C = 8524.937019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.299 6.299 3 C 0.363 3.637 4 C -0.188 4.188 5 C 0.162 3.838 6 C 0.565 3.435 7 O -0.538 6.538 8 N -0.562 5.562 9 C 0.108 3.892 10 C -0.131 4.131 11 C -0.132 4.132 12 C 0.154 3.846 13 H 0.055 0.945 14 C 0.083 3.917 15 H 0.162 0.838 16 C -0.143 4.143 17 C 0.184 3.816 18 N -0.596 5.596 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 N -0.495 5.495 28 C 0.336 3.664 29 N -0.565 5.565 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.251 0.749 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -15.995 -3.967 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.203 6.203 3 C 0.174 3.826 4 C -0.212 4.212 5 C 0.019 3.981 6 C 0.350 3.650 7 O -0.416 6.416 8 N -0.290 5.290 9 C -0.014 4.014 10 C -0.170 4.170 11 C -0.172 4.172 12 C 0.046 3.954 13 H 0.073 0.927 14 C -0.020 4.020 15 H 0.177 0.823 16 C -0.182 4.182 17 C 0.059 3.941 18 N -0.320 5.320 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 N -0.216 5.216 28 C 0.049 3.951 29 N -0.295 5.295 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.181 0.819 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.702 -15.761 -4.080 16.503 hybrid contribution 0.026 0.340 0.742 0.817 sum -2.676 -15.421 -3.337 16.003 Atomic orbital electron populations 1.23001 0.76307 1.03486 1.03041 1.86248 1.23641 1.23703 1.86685 1.20035 0.89197 0.85240 0.88105 1.21814 0.92659 1.00293 1.06402 1.21494 0.95183 0.88665 0.92795 1.17759 0.85319 0.83345 0.78541 1.90762 1.61622 1.39073 1.50124 1.47625 1.07370 1.10006 1.64046 1.21804 0.79207 1.02106 0.98253 1.21912 1.00086 0.98529 0.96469 1.22156 0.97760 0.95073 1.02259 1.21356 0.91203 0.87765 0.95123 0.92738 1.23423 0.97582 0.85251 0.95782 0.82299 1.22990 1.00253 0.97251 0.97707 1.21132 0.99830 0.91090 0.82029 1.44653 1.71314 1.13035 1.03026 1.19021 1.33906 0.95571 0.86808 0.90609 1.24756 1.01276 0.97745 0.96453 1.69952 1.48245 1.21739 1.16819 0.86169 0.77589 0.81004 0.81285 1.21730 1.21730 1.20790 1.68610 1.06133 1.30783 1.16040 1.25061 0.88541 0.93874 0.87582 1.68087 1.41920 0.99297 1.20215 0.88136 0.91726 0.91782 0.81897 0.89160 0.91074 0.91968 0.91261 0.91859 0.92314 0.92938 0.91958 0.94398 0.93006 0.93815 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.41 101.05 1.05 1.32 16 2 O -0.30 -3.22 10.49 -18.21 -0.19 -3.41 16 3 C 0.36 4.46 7.54 -16.68 -0.13 4.33 16 4 C -0.19 -2.43 9.67 -38.72 -0.37 -2.81 16 5 C 0.16 2.38 6.56 -82.70 -0.54 1.83 16 6 C 0.57 9.08 7.63 -12.06 -0.09 8.99 16 7 O -0.54 -9.36 15.84 5.37 0.09 -9.28 16 8 N -0.56 -8.98 2.73 -165.93 -0.45 -9.43 16 9 C 0.11 1.55 6.16 -3.64 -0.02 1.53 16 10 C -0.13 -1.86 6.11 -26.63 -0.16 -2.02 16 11 C -0.13 -2.35 5.10 -26.86 -0.14 -2.49 16 12 C 0.15 3.06 3.59 -66.41 -0.24 2.82 16 13 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.08 1.47 2.60 -67.32 -0.18 1.29 16 15 H 0.16 2.86 3.86 -89.32 -0.35 2.52 16 16 C -0.14 -2.65 6.08 -25.16 -0.15 -2.80 16 17 C 0.18 4.27 5.19 -2.88 -0.01 4.25 16 18 N -0.60 -14.35 2.91 -162.27 -0.47 -14.82 16 19 C -0.22 -6.00 10.29 -15.06 -0.16 -6.16 16 20 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.10 10.33 55.49 0.57 -25.52 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 N -0.49 -7.18 6.26 -11.20 -0.07 -7.25 16 28 C 0.34 4.20 12.27 -92.30 -1.13 3.06 16 29 N -0.56 -6.92 9.36 -14.64 -0.14 -7.05 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.12 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.16 1.96 7.80 -52.49 -0.41 1.55 16 34 H 0.09 1.25 6.94 -51.93 -0.36 0.89 16 35 H 0.07 0.99 7.53 -51.92 -0.39 0.59 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.20 7.12 -51.93 -0.37 0.83 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.94 6.81 -51.93 -0.35 0.59 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.04 0.98 7.60 -51.93 -0.39 0.59 16 43 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.21 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -30.68 357.75 -9.02 -39.70 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.35 Total: 2.18 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -2.37 Total: 12.90 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.56 Total: -64.08 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.11 Total: -12.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.68 -9.02 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049478642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.973 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds