Wall clock time and date at job start Sat Apr 11 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35511 * 116.99662 * 2 1 4 4 C 1.39642 * 120.49025 * 180.30214 * 3 2 1 5 5 C 1.39142 * 118.20484 * 180.21505 * 4 3 2 6 6 C 1.48449 * 120.51947 * 179.75799 * 5 4 3 7 7 O 1.21484 * 119.99763 * 351.59066 * 6 5 4 8 8 N 1.34777 * 120.00331 * 171.58723 * 6 5 4 9 9 C 1.47849 * 122.22545 * 353.17316 * 8 6 5 10 10 C 1.52716 * 111.06153 * 232.49962 * 9 8 6 11 11 C 1.53872 * 111.52540 * 311.47383 * 10 9 8 12 12 C 1.51079 * 107.33737 * 56.92623 * 11 10 9 13 13 H 1.09000 * 108.73709 * 50.83421 * 12 11 10 14 14 C 1.45729 * 122.22822 * 173.19106 * 8 6 5 15 15 H 1.08994 * 111.07086 * 240.50997 * 14 8 6 16 16 C 1.53431 * 116.36778 * 9.88348 * 14 8 6 17 17 C 1.55526 * 101.75666 * 152.52446 * 16 14 8 18 18 N 1.45022 * 119.19194 * 176.10523 * 12 11 10 19 19 C 1.36938 * 126.55906 * 331.17449 * 18 12 11 20 20 H 1.08002 * 120.00056 * 15.90839 * 19 18 12 21 21 C 1.38816 * 120.00072 * 195.91584 * 19 18 12 22 22 N 1.31614 * 119.99989 * 184.15361 * 21 19 18 23 23 Si 1.86801 * 120.00003 * 4.14722 * 21 19 18 24 24 H 1.48493 * 109.47094 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.46689 * 60.00323 * 23 21 19 26 26 H 1.48497 * 109.47060 * 300.00528 * 23 21 19 27 27 N 1.33278 * 118.96383 * 359.48657 * 5 4 3 28 28 C 1.31521 * 120.88805 * 0.27396 * 27 5 4 29 29 N 1.31891 * 121.98839 * 359.97438 * 28 27 5 30 30 H 1.08997 * 109.47047 * 299.99675 * 1 2 3 31 31 H 1.09003 * 109.46759 * 60.00591 * 1 2 3 32 32 H 1.09002 * 109.47046 * 179.97438 * 1 2 3 33 33 H 1.08007 * 120.89547 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.16087 * 112.09341 * 9 8 6 35 35 H 1.09001 * 109.11783 * 352.88063 * 9 8 6 36 36 H 1.08999 * 109.06766 * 190.94664 * 10 9 8 37 37 H 1.08997 * 109.01790 * 71.96612 * 10 9 8 38 38 H 1.09002 * 109.88058 * 297.46736 * 11 10 9 39 39 H 1.08996 * 109.88444 * 176.38097 * 11 10 9 40 40 H 1.08997 * 110.98833 * 270.80926 * 16 14 8 41 41 H 1.09000 * 110.99288 * 34.61874 * 16 14 8 42 42 H 1.09005 * 110.07460 * 218.30154 * 17 16 14 43 43 H 1.08998 * 109.87537 * 97.03923 * 17 16 14 44 44 H 0.96998 * 119.99940 * 359.97438 * 22 21 19 45 45 H 1.08000 * 119.00418 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2926 -0.0063 5 6 4.0197 2.5565 -0.0015 6 6 5.4966 2.7067 -0.0024 7 8 6.2063 1.7321 0.1464 8 7 6.0501 3.9243 -0.1684 9 6 5.2437 5.1183 -0.5002 10 6 5.8017 5.8335 -1.7287 11 6 7.3214 6.0469 -1.6160 12 6 7.9530 4.6893 -1.4147 13 1 7.5806 4.0124 -2.1836 14 6 7.4832 4.1516 -0.0333 15 1 7.6934 4.8648 0.7636 16 6 8.3642 2.9002 0.0763 17 6 9.7124 3.4096 -0.5082 18 7 9.3983 4.5825 -1.3612 19 6 10.3004 5.4033 -1.9837 20 1 9.9833 6.3617 -2.3676 21 6 11.6226 5.0036 -2.1216 22 7 12.5072 5.8250 -2.6460 23 14 12.1464 3.2999 -1.5626 24 1 13.5984 3.1203 -1.8163 25 1 11.3811 2.2746 -2.3166 26 1 11.8759 3.1506 -0.1101 27 7 3.2302 3.6303 -0.0014 28 6 1.9210 3.5057 -0.0005 29 7 1.3314 2.3260 -0.0001 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0480 0.4013 -0.0109 34 1 5.2533 5.8034 0.3476 35 1 4.2171 4.8115 -0.7004 36 1 5.3126 6.8023 -1.8296 37 1 5.5910 5.2345 -2.6146 38 1 7.5433 6.6892 -0.7637 39 1 7.7010 6.5002 -2.5317 40 1 8.4781 2.5928 1.1158 41 1 7.9635 2.0864 -0.5282 42 1 10.1795 2.6281 -1.1075 43 1 10.3788 3.7064 0.3016 44 1 12.2352 6.7096 -2.9365 45 1 1.3102 4.3964 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049478643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:15 Heat of formation + Delta-G solvation = 51.239627 kcal Electronic energy + Delta-G solvation = -29350.001510 eV Core-core repulsion = 25370.799833 eV Total energy + Delta-G solvation = -3979.201676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83664 -40.40182 -38.95498 -37.95566 -35.75457 -33.82168 -32.84135 -32.24433 -32.16830 -29.44468 -28.66730 -28.12226 -25.87156 -24.78520 -24.28981 -23.61500 -21.95000 -21.38634 -20.42269 -19.50732 -18.77190 -18.02127 -17.16233 -16.73812 -16.31531 -16.14564 -15.79433 -15.52179 -15.42010 -14.97419 -14.82244 -14.45291 -14.33975 -14.10814 -13.90419 -13.36472 -13.08570 -12.89664 -12.56598 -12.32769 -12.18177 -12.13784 -11.92853 -11.49969 -11.45720 -10.99027 -10.77386 -10.76501 -10.68841 -10.54024 -10.29098 -10.06848 -9.69904 -9.52171 -9.21668 -9.04823 -8.96823 -8.74572 -8.38182 -6.96074 -6.25484 -3.21104 0.14956 0.55707 2.27595 2.58429 2.88559 3.43597 3.47389 3.54077 3.55442 3.57457 3.75122 4.19787 4.52651 4.65587 4.68902 4.76426 4.80286 4.84342 5.08434 5.14357 5.19280 5.25143 5.30420 5.34126 5.45811 5.56590 5.60247 5.61834 5.84452 5.91363 5.95924 6.12334 6.15306 6.26644 6.32461 6.38091 6.49336 6.53937 6.58748 6.61164 6.70513 6.92793 7.01781 7.42016 7.51130 7.74836 8.06443 8.36402 9.07215 9.62395 10.29939 11.25255 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023863 B = 0.003099 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.103106 B = 9034.183718 C = 9894.950977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.366 3.634 4 C -0.184 4.184 5 C 0.167 3.833 6 C 0.569 3.431 7 O -0.517 6.517 8 N -0.570 5.570 9 C 0.078 3.922 10 C -0.129 4.129 11 C -0.115 4.115 12 C 0.162 3.838 13 H 0.022 0.978 14 C 0.112 3.888 15 H 0.088 0.912 16 C -0.121 4.121 17 C 0.092 3.908 18 N -0.603 5.603 19 C -0.316 4.316 20 H 0.079 0.921 21 C -0.023 4.023 22 N -0.933 5.933 23 Si 1.076 2.924 24 H -0.303 1.303 25 H -0.296 1.296 26 H -0.283 1.283 27 N -0.511 5.511 28 C 0.331 3.669 29 N -0.567 5.567 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.260 0.740 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.949 -6.298 6.837 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.200 6.200 3 C 0.178 3.822 4 C -0.208 4.208 5 C 0.023 3.977 6 C 0.353 3.647 7 O -0.393 6.393 8 N -0.301 5.301 9 C -0.044 4.044 10 C -0.168 4.168 11 C -0.153 4.153 12 C 0.053 3.947 13 H 0.039 0.961 14 C 0.007 3.993 15 H 0.106 0.894 16 C -0.159 4.159 17 C -0.032 4.032 18 N -0.329 5.329 19 C -0.443 4.443 20 H 0.096 0.904 21 C -0.222 4.222 22 N -0.575 5.575 23 Si 0.911 3.089 24 H -0.231 1.231 25 H -0.225 1.225 26 H -0.210 1.210 27 N -0.233 5.233 28 C 0.043 3.957 29 N -0.298 5.298 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -25.610 -7.318 6.986 27.536 hybrid contribution -1.224 0.619 -0.178 1.383 sum -26.834 -6.699 6.808 28.483 Atomic orbital electron populations 1.23021 0.76185 1.03711 1.02923 1.86281 1.23725 1.23570 1.86414 1.20052 0.89227 0.85200 0.87729 1.21915 0.92680 1.00658 1.05568 1.21652 0.95289 0.88538 0.92205 1.17664 0.84944 0.83516 0.78534 1.90794 1.60410 1.38012 1.50059 1.47808 1.08477 1.07725 1.66067 1.22843 0.98279 0.85983 0.97313 1.21947 0.96556 1.00289 0.98036 1.21408 0.93292 0.98118 1.02513 1.20717 0.85973 0.94866 0.93192 0.96065 1.22542 0.77738 0.98866 1.00107 0.89380 1.22790 0.94281 0.96877 1.01903 1.22776 0.96046 0.90314 0.94057 1.44367 1.00074 1.32042 1.56441 1.20125 0.90758 0.98695 1.34768 0.90366 1.25881 0.91884 1.05596 0.98881 1.70919 1.34844 1.08675 1.43077 0.83797 0.73974 0.74923 0.76239 1.23131 1.22521 1.20977 1.68447 1.06137 1.31627 1.17068 1.24883 0.88422 0.93945 0.88415 1.68044 1.41970 0.99311 1.20477 0.91770 0.91754 0.87964 0.81545 0.91710 0.84400 0.90779 0.92180 0.91840 0.91380 0.91209 0.88480 0.94236 0.92751 0.93036 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.41 101.05 1.05 1.26 16 2 O -0.30 -2.70 10.49 -18.23 -0.19 -2.89 16 3 C 0.37 3.71 7.54 -16.68 -0.13 3.58 16 4 C -0.18 -2.07 9.67 -38.72 -0.37 -2.45 16 5 C 0.17 2.04 6.65 -82.70 -0.55 1.49 16 6 C 0.57 8.66 7.71 -12.05 -0.09 8.56 16 7 O -0.52 -9.06 13.17 5.38 0.07 -8.99 16 8 N -0.57 -8.70 2.91 -164.87 -0.48 -9.18 16 9 C 0.08 0.96 5.94 -3.45 -0.02 0.94 16 10 C -0.13 -1.70 5.92 -26.42 -0.16 -1.86 16 11 C -0.11 -2.01 5.39 -27.24 -0.15 -2.15 16 12 C 0.16 3.33 2.58 -68.36 -0.18 3.15 16 13 H 0.02 0.48 8.04 -51.93 -0.42 0.07 16 14 C 0.11 2.01 3.33 -66.80 -0.22 1.78 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 16 C -0.12 -2.33 5.14 -25.16 -0.13 -2.46 16 17 C 0.09 2.11 4.68 -1.66 -0.01 2.10 16 18 N -0.60 -15.02 3.27 -163.24 -0.53 -15.55 16 19 C -0.32 -9.06 10.31 -15.06 -0.16 -9.22 16 20 H 0.08 2.34 7.54 -52.49 -0.40 1.94 16 21 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 22 N -0.93 -29.69 13.71 55.49 0.76 -28.93 16 23 Si 1.08 27.69 24.58 -169.99 -4.18 23.52 16 24 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 25 H -0.30 -7.45 6.58 56.52 0.37 -7.08 16 26 H -0.28 -6.65 5.29 56.52 0.30 -6.35 16 27 N -0.51 -5.22 6.37 -11.21 -0.07 -5.29 16 28 C 0.33 2.64 12.27 -92.31 -1.13 1.51 16 29 N -0.57 -5.16 9.36 -14.65 -0.14 -5.30 16 30 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.17 1.84 7.75 -52.48 -0.41 1.43 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.14 1.51 4.16 -72.82 -0.30 1.21 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 39 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.10 1.95 5.99 -51.93 -0.31 1.64 16 42 H 0.04 0.96 4.22 -51.93 -0.22 0.74 16 43 H 0.05 1.27 6.20 -51.93 -0.32 0.95 16 44 H 0.26 8.14 8.72 -40.82 -0.36 7.79 16 45 H 0.21 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -34.21 347.54 -8.14 -42.36 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.29 Total: -0.43 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.33 Total: 5.46 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.46 Total: -64.25 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.12 Total: -11.88 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.18 Total: 23.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.21 -8.14 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049478643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.595 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds