Wall clock time and date at job start Sat Apr 11 2020 03:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99840 * 2 1 4 4 O 1.21502 * 119.99860 * 0.02562 * 3 2 1 5 5 C 1.48226 * 120.00056 * 179.97438 * 3 2 1 6 6 C 1.39622 * 119.65467 * 179.97438 * 5 3 2 7 7 C 1.38546 * 119.24624 * 179.74764 * 6 5 3 8 8 C 1.38585 * 118.55241 * 0.25337 * 7 6 5 9 9 C 1.39592 * 119.24875 * 0.02562 * 8 7 6 10 10 C 1.48216 * 119.65242 * 179.97438 * 9 8 7 11 11 O 1.21509 * 120.00473 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99942 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00323 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47131 * 180.02562 * 13 12 10 15 15 H 1.08995 * 112.84943 * 43.80193 * 14 13 12 16 16 C 1.53784 * 113.61333 * 175.00320 * 14 13 12 17 17 C 1.53774 * 87.08020 * 139.97821 * 16 14 13 18 18 H 1.09004 * 113.61655 * 89.11723 * 17 16 14 19 19 N 1.46504 * 113.61251 * 219.93192 * 17 16 14 20 20 C 1.36942 * 119.99735 * 205.00358 * 19 17 16 21 21 H 1.08000 * 120.00263 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99695 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99869 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99834 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47005 * 90.00596 * 24 22 20 26 26 H 1.48500 * 109.46687 * 210.00193 * 24 22 20 27 27 H 1.48498 * 109.47348 * 330.00219 * 24 22 20 28 28 C 1.53777 * 87.08369 * 334.56450 * 17 16 14 29 29 N 1.32349 * 119.65364 * 0.24752 * 5 3 2 30 30 H 1.09001 * 109.47485 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47696 * 299.99822 * 1 2 3 33 33 H 0.97000 * 120.00381 * 179.97438 * 2 1 3 34 34 H 1.08002 * 120.37938 * 0.02997 * 6 5 3 35 35 H 1.07994 * 120.72294 * 180.23231 * 7 6 5 36 36 H 1.08004 * 120.37505 * 180.02562 * 8 7 6 37 37 H 0.96997 * 119.99991 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47018 * 300.00526 * 13 12 10 39 39 H 1.09001 * 109.46442 * 59.99697 * 13 12 10 40 40 H 1.08999 * 113.61342 * 254.53194 * 16 14 13 41 41 H 1.09003 * 113.61261 * 25.42743 * 16 14 13 42 42 H 0.96998 * 120.00161 * 25.00672 * 19 17 16 43 43 H 0.96998 * 120.00426 * 180.02562 * 23 22 20 44 44 H 1.08999 * 113.61674 * 270.88235 * 28 17 16 45 45 H 1.09003 * 113.61379 * 139.98030 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6211 1.1673 0.0006 6 6 4.3118 2.3807 0.0000 7 6 5.6973 2.3709 0.0059 8 6 6.3510 1.1489 0.0068 9 6 5.5988 -0.0270 0.0012 10 6 6.2888 -1.3388 0.0014 11 8 7.5029 -1.3868 0.0070 12 7 5.5695 -2.4786 -0.0044 13 6 6.2514 -3.7752 -0.0036 14 6 5.2121 -4.8980 -0.0117 15 1 4.3963 -4.7146 -0.7110 16 6 5.8244 -6.3034 -0.1342 17 6 4.7744 -6.7645 0.8902 18 1 3.8380 -7.0920 0.4385 19 7 5.2941 -7.7161 1.8754 20 6 4.4428 -8.5879 2.5005 21 1 3.3883 -8.5736 2.2675 22 6 4.9352 -9.4893 3.4344 23 7 4.1172 -10.3275 4.0347 24 14 6.7589 -9.5134 3.8378 25 1 7.0295 -8.5819 4.9622 26 1 7.1616 -10.8889 4.2266 27 1 7.5354 -9.0887 2.6454 28 6 4.7410 -5.3115 1.3926 29 7 4.2759 0.0172 -0.0039 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.9500 -0.8400 0.0004 34 1 3.7724 3.3163 -0.0003 35 1 6.2555 3.2953 0.0094 36 1 7.4302 1.1069 0.0117 37 1 4.6003 -2.4404 -0.0085 38 1 6.8798 -3.8558 -0.8905 39 1 6.8708 -3.8593 0.8894 40 1 5.6981 -6.7502 -1.1203 41 1 6.8491 -6.3666 0.2321 42 1 6.2411 -7.7287 2.0850 43 1 4.4611 -10.9571 4.6876 44 1 5.4694 -5.1036 2.1764 45 1 3.7399 -4.9576 1.6391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086263313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:43 Heat of formation + Delta-G solvation = 1.115799 kcal Electronic energy + Delta-G solvation = -27162.606748 eV Core-core repulsion = 23181.231539 eV Total energy + Delta-G solvation = -3981.375209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33701 -39.99546 -39.13755 -38.44666 -35.16903 -34.94579 -33.53741 -33.05781 -32.19785 -30.76295 -27.90720 -27.65819 -25.26356 -25.06024 -24.48858 -23.52155 -21.48582 -21.03699 -20.83578 -19.50449 -18.86745 -18.03620 -17.44486 -16.62705 -16.54963 -16.21972 -16.01760 -15.61438 -15.51649 -15.16331 -14.78271 -14.62532 -14.26488 -14.18393 -13.91167 -13.64502 -13.35580 -13.04144 -12.71734 -12.65104 -12.63579 -12.26896 -12.02288 -11.68376 -11.61789 -11.23024 -10.93166 -10.59915 -10.54446 -10.51575 -10.28848 -10.17364 -10.03074 -9.86127 -9.83431 -9.58114 -9.53508 -9.18401 -8.92321 -7.30219 -5.81227 -3.16894 -0.02819 0.35468 2.02251 2.61754 2.64730 2.79827 3.35308 3.38390 3.42939 3.43470 3.43843 4.19151 4.27113 4.36916 4.42871 4.55617 4.78973 4.81384 4.83074 4.91303 4.96336 5.06664 5.12056 5.33272 5.35918 5.37685 5.41574 5.49877 5.60170 5.66786 5.75049 5.78746 5.87069 5.91656 6.09488 6.13794 6.18274 6.28287 6.46082 6.63426 6.77697 6.93635 7.06667 7.32573 7.68046 7.90193 7.95004 8.38552 9.16339 9.89111 10.08705 11.36968 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.002349 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.698978 B =11919.629015 C =13279.159083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.713 5.713 3 C 0.573 3.427 4 O -0.531 6.531 5 C 0.077 3.923 6 C -0.091 4.091 7 C -0.085 4.085 8 C -0.089 4.089 9 C 0.083 3.917 10 C 0.568 3.432 11 O -0.532 6.532 12 N -0.702 5.702 13 C 0.129 3.871 14 C -0.127 4.127 15 H 0.092 0.908 16 C -0.145 4.145 17 C 0.172 3.828 18 H 0.084 0.916 19 N -0.737 5.737 20 C -0.249 4.249 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C -0.161 4.161 29 N -0.434 5.434 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.414 0.586 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.077 0.923 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 26.502 -11.894 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.364 5.364 3 C 0.357 3.643 4 O -0.407 6.407 5 C -0.064 4.064 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.058 4.058 10 C 0.352 3.648 11 O -0.408 6.408 12 N -0.352 5.352 13 C 0.006 3.994 14 C -0.146 4.146 15 H 0.111 0.889 16 C -0.185 4.185 17 C 0.061 3.939 18 H 0.102 0.898 19 N -0.377 5.377 20 C -0.378 4.378 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.202 4.202 29 N -0.149 5.149 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.997 26.184 -11.794 28.735 hybrid contribution 1.502 0.305 0.447 1.596 sum 0.505 26.489 -11.347 28.822 Atomic orbital electron populations 1.21656 0.78663 1.03021 1.02567 1.45630 1.08075 1.08960 1.73767 1.17822 0.85492 0.84223 0.76721 1.90801 1.68673 1.31267 1.49988 1.21078 0.94219 0.89371 1.01746 1.22343 0.94787 0.99518 0.94541 1.21708 0.93960 0.98786 0.96584 1.22394 1.02846 0.91619 0.94118 1.21192 0.88995 0.94696 1.00881 1.17789 0.86538 0.83137 0.77334 1.90811 1.12866 1.86918 1.50229 1.45878 1.11104 1.05431 1.72807 1.21547 0.95117 0.80283 1.02424 1.22647 0.98178 0.93775 1.00025 0.88947 1.23474 1.00403 0.93898 1.00713 1.21499 0.95663 0.87649 0.89128 0.89810 1.42764 1.06793 1.40893 1.47217 1.19133 0.92201 1.10014 1.16499 0.89140 1.24700 0.97222 0.98142 0.99049 1.69697 1.33670 1.23905 1.30744 0.86556 0.86667 0.77101 0.78253 1.21053 1.21692 1.20246 1.23923 1.00864 1.00778 0.94622 1.67339 1.09368 1.29373 1.08855 0.91870 0.89945 0.91811 0.75088 0.82783 0.82985 0.82643 0.75473 0.91305 0.90932 0.91574 0.90293 0.80443 0.93009 0.90427 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.70 59.84 0.64 1.15 16 2 N -0.71 -5.41 5.70 -67.92 -0.39 -5.80 16 3 C 0.57 5.60 7.81 -12.15 -0.09 5.51 16 4 O -0.53 -6.54 16.32 5.36 0.09 -6.45 16 5 C 0.08 0.69 6.75 -83.02 -0.56 0.13 16 6 C -0.09 -0.66 9.63 -38.95 -0.38 -1.03 16 7 C -0.08 -0.49 10.16 -39.34 -0.40 -0.89 16 8 C -0.09 -0.69 9.63 -38.95 -0.38 -1.07 16 9 C 0.08 0.81 6.75 -83.03 -0.56 0.25 16 10 C 0.57 6.65 7.81 -12.16 -0.09 6.56 16 11 O -0.53 -7.75 16.32 5.36 0.09 -7.67 16 12 N -0.70 -7.32 5.54 -61.13 -0.34 -7.66 16 13 C 0.13 1.48 5.51 -4.04 -0.02 1.46 16 14 C -0.13 -1.47 3.76 -89.81 -0.34 -1.81 16 15 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.15 -2.03 7.39 -25.92 -0.19 -2.22 16 17 C 0.17 3.04 4.48 -67.12 -0.30 2.74 16 18 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 19 N -0.74 -16.83 5.21 -52.64 -0.27 -17.11 16 20 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 24 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 28 C -0.16 -2.38 7.43 -25.92 -0.19 -2.57 16 29 N -0.43 -3.93 8.71 -6.38 -0.06 -3.99 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.41 2.59 8.16 -40.82 -0.33 2.26 16 34 H 0.15 0.95 7.64 -52.49 -0.40 0.55 16 35 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.16 1.10 7.64 -52.48 -0.40 0.70 16 37 H 0.41 3.58 7.80 -40.82 -0.32 3.26 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.13 8.08 -51.93 -0.42 0.72 16 42 H 0.36 8.19 5.79 -40.82 -0.24 7.95 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -34.78 384.38 -8.47 -43.24 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.32 Total: 9.46 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.12 Total: 1.22 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.28 Total: -62.75 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.17 Total: -14.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.78 -8.47 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086263313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.359 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds