Wall clock time and date at job start Sat Apr 11 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99734 * 2 1 4 4 C 1.53005 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46991 * 64.99516 * 4 3 2 6 6 C 1.48021 * 110.99942 * 66.04921 * 5 4 3 7 7 C 1.50985 * 113.12981 * 83.99897 * 6 5 4 8 8 C 1.54707 * 109.08348 * 92.03834 * 7 6 5 9 9 O 1.36610 * 110.79669 * 286.65571 * 8 7 6 10 10 C 1.43451 * 117.83727 * 61.03292 * 9 8 7 11 11 H 1.09002 * 109.84247 * 37.49903 * 10 9 8 12 12 C 1.53004 * 109.83737 * 158.40349 * 10 9 8 13 13 N 1.46499 * 109.47198 * 300.00121 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 S 1.81005 * 109.46906 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99828 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00390 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00444 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47406 * 89.99536 * 22 20 18 24 24 H 1.48502 * 109.46978 * 209.99777 * 22 20 18 25 25 H 1.48504 * 109.47081 * 329.99606 * 22 20 18 26 26 C 1.47399 * 110.99964 * 193.23415 * 5 4 3 27 27 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46704 * 300.00206 * 1 2 3 29 29 H 1.08995 * 109.46976 * 60.00154 * 1 2 3 30 30 H 1.08996 * 109.47651 * 60.00262 * 3 2 1 31 31 H 1.08999 * 109.47026 * 299.99382 * 3 2 1 32 32 H 1.09000 * 109.46938 * 304.99687 * 4 3 2 33 33 H 1.09000 * 109.47515 * 185.00116 * 4 3 2 34 34 H 1.08993 * 108.75612 * 323.05595 * 6 5 4 35 35 H 1.09000 * 108.65624 * 204.86827 * 6 5 4 36 36 H 1.09001 * 109.53998 * 332.15743 * 7 6 5 37 37 H 1.09005 * 109.60052 * 211.96158 * 7 6 5 38 38 H 1.09004 * 109.21423 * 166.31198 * 8 7 6 39 39 H 1.08998 * 109.20914 * 46.99262 * 8 7 6 40 40 H 1.09009 * 109.46730 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46846 * 60.00453 * 12 10 9 42 42 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 44 44 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 45 45 H 0.96995 * 120.00766 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.06226 * 72.72735 * 26 5 4 47 47 H 1.09001 * 109.05970 * 313.80785 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6928 1.4421 -2.4124 7 6 4.7619 2.4831 -2.6424 8 6 5.8053 1.9249 -3.6389 9 8 6.5898 0.9798 -3.0410 10 6 5.9487 -0.1976 -2.5305 11 1 5.1429 -0.4997 -3.1994 12 6 6.9692 -1.3304 -2.4025 13 7 7.5415 -1.6232 -3.7189 14 6 8.4651 -2.5959 -3.8509 15 8 8.8261 -3.2252 -2.8790 16 6 9.0492 -2.9013 -5.2060 17 16 10.2521 -4.2454 -5.0555 18 6 10.7606 -4.3905 -6.7363 19 1 10.3326 -3.7437 -7.4878 20 6 11.7112 -5.3362 -7.0946 21 7 12.0908 -5.4451 -8.3502 22 14 12.4511 -6.4557 -5.7949 23 1 11.6307 -7.6878 -5.6777 24 1 13.8370 -6.8190 -6.1854 25 1 12.4738 -5.7499 -4.4885 26 6 5.3871 0.1427 -1.1703 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9786 2.1765 0.0889 34 1 2.7422 1.9476 -2.2430 35 1 3.6064 0.8251 -3.3068 36 1 5.2505 2.7190 -1.6971 37 1 4.3106 3.3857 -3.0546 38 1 6.4346 2.7411 -3.9941 39 1 5.2875 1.4770 -4.4871 40 1 6.4760 -2.2214 -2.0138 41 1 7.7635 -1.0283 -1.7199 42 1 7.2524 -1.1201 -4.4962 43 1 8.2519 -3.2013 -5.8861 44 1 9.5449 -2.0127 -5.5968 45 1 12.7548 -6.1062 -8.6007 46 1 5.4591 -0.7336 -0.5260 47 1 5.9737 0.9519 -0.7353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149207607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:50 Heat of formation + Delta-G solvation = -114.769397 kcal Electronic energy + Delta-G solvation = -26364.667972 eV Core-core repulsion = 22481.418804 eV Total energy + Delta-G solvation = -3883.249168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.71233 -39.08713 -38.39431 -36.64103 -35.01888 -32.77546 -32.40224 -31.56853 -29.80149 -28.20559 -26.81993 -26.53776 -25.59053 -24.47015 -23.11219 -21.58107 -20.56419 -20.01052 -17.93354 -17.31276 -17.27901 -16.96983 -16.60553 -16.28175 -16.13996 -15.52255 -15.25484 -15.07487 -14.98046 -14.88805 -14.78417 -13.79451 -13.44986 -13.34742 -13.24914 -13.12752 -12.90963 -12.84044 -12.75452 -12.42645 -12.29469 -11.98938 -11.88233 -11.62355 -11.35975 -11.23080 -11.16825 -10.97523 -10.70275 -10.56242 -10.05863 -9.89107 -9.81272 -9.46577 -8.97974 -8.90313 -8.64273 -8.45557 -6.87335 -6.25472 -3.96720 2.79837 3.04204 3.18355 3.27773 3.36213 3.38150 3.50034 3.54205 3.74134 4.26524 4.36258 4.37003 4.47437 4.55719 4.63976 4.67186 4.72941 4.80612 4.84235 4.90904 4.95255 4.96467 5.02768 5.08499 5.13584 5.22063 5.30120 5.31891 5.36112 5.38910 5.40073 5.44365 5.52806 5.63015 5.73783 5.81761 5.84010 6.07503 6.52873 6.57927 6.58202 6.82442 7.21819 7.68036 7.97616 8.45282 8.55557 9.20829 10.83740 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.001990 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.210155 B =14065.590560 C =14605.766795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.533 5.533 6 C 0.044 3.956 7 C -0.196 4.196 8 C 0.076 3.924 9 O -0.376 6.376 10 C 0.084 3.916 11 H 0.080 0.920 12 C 0.134 3.866 13 N -0.730 5.730 14 C 0.531 3.469 15 O -0.521 6.521 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.035 3.965 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.091 0.909 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.449 19.731 15.321 34.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.257 5.257 6 C -0.083 4.083 7 C -0.235 4.235 8 C -0.003 4.003 9 O -0.294 6.294 10 C 0.027 3.973 11 H 0.098 0.902 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.317 3.683 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.093 4.093 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.696 18.025 16.773 33.486 hybrid contribution -0.325 1.561 -1.148 1.964 sum -23.020 19.586 15.626 34.025 Atomic orbital electron populations 1.22737 0.81527 1.02825 0.99546 1.88017 1.19003 1.26958 1.95217 1.22615 0.93379 0.85424 0.99822 1.22102 0.93642 0.98323 0.93064 1.62154 1.19249 1.41644 1.02650 1.22156 0.98131 0.93520 0.94537 1.22908 0.98908 1.00141 1.01581 1.21848 0.93627 0.91426 0.93354 1.86524 1.37056 1.29221 1.76615 1.22222 0.94964 0.85275 0.94854 0.90192 1.21285 0.95996 0.95419 0.86383 1.45790 1.43782 1.38594 1.10314 1.20252 0.78299 0.78836 0.90878 1.90699 1.59406 1.49342 1.40170 1.23267 1.03101 1.04541 0.96466 1.84778 1.48855 1.43050 1.14890 1.22327 1.28617 1.24617 0.91262 0.89396 1.24716 0.95039 0.96199 0.95400 1.69937 1.30926 1.34720 1.16191 0.86729 0.79210 0.82217 0.83666 1.19218 1.19991 1.15893 1.22394 0.87569 1.01529 0.97762 0.89579 0.94442 0.94315 0.93084 0.93234 0.89616 0.93213 0.90820 0.90688 0.91033 0.90390 0.88724 0.94046 0.89677 0.90687 0.76503 0.88537 0.88440 0.91981 0.89121 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.27 10.65 -35.23 -0.38 -3.64 16 3 C 0.06 0.41 6.02 37.16 0.22 0.63 16 4 C 0.06 0.38 5.23 -3.82 -0.02 0.36 16 5 N -0.53 -4.22 4.69 -235.72 -1.11 -5.33 16 6 C 0.04 0.29 4.99 -4.22 -0.02 0.27 16 7 C -0.20 -1.19 5.63 -26.85 -0.15 -1.35 16 8 C 0.08 0.55 6.43 38.06 0.24 0.79 16 9 O -0.38 -3.62 9.38 -21.71 -0.20 -3.83 16 10 C 0.08 0.77 2.37 -27.72 -0.07 0.70 16 11 H 0.08 0.72 6.78 -51.93 -0.35 0.37 16 12 C 0.13 1.55 5.16 -4.04 -0.02 1.53 16 13 N -0.73 -9.81 5.46 -60.29 -0.33 -10.14 16 14 C 0.53 9.71 7.85 -10.99 -0.09 9.63 16 15 O -0.52 -11.48 15.86 5.55 0.09 -11.39 16 16 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 18 C -0.52 -15.19 10.04 30.94 0.31 -14.87 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 22 Si 0.86 22.04 27.74 -169.99 -4.72 17.33 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 26 C 0.04 0.29 4.62 -4.54 -0.02 0.27 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.28 6.07 -51.93 -0.32 -0.03 16 32 H 0.09 0.60 8.04 -51.93 -0.42 0.18 16 33 H 0.05 0.28 7.58 -51.93 -0.39 -0.11 16 34 H 0.07 0.43 5.75 -51.93 -0.30 0.14 16 35 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 36 H 0.07 0.50 6.69 -51.93 -0.35 0.16 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.28 7.72 -51.93 -0.40 -0.12 16 40 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.40 4.46 8.36 -40.82 -0.34 4.12 16 43 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.09 0.76 7.74 -51.93 -0.40 0.35 16 47 H 0.05 0.44 7.12 -51.93 -0.37 0.07 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -35.14 384.38 -8.22 -43.36 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.78 Total: -0.21 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 1.63 Total: -0.25 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.66 Total: -41.50 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.49 Total: -18.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.14 -8.22 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.410 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds