Wall clock time and date at job start Sat Apr 11 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99734 * 2 1 4 4 C 1.53005 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46991 * 64.99516 * 4 3 2 6 6 C 1.48021 * 110.99942 * 66.04921 * 5 4 3 7 7 C 1.50985 * 113.12981 * 83.99897 * 6 5 4 8 8 C 1.54707 * 109.08348 * 92.03834 * 7 6 5 9 9 O 1.36610 * 110.79669 * 286.65571 * 8 7 6 10 10 C 1.43451 * 117.83727 * 61.03292 * 9 8 7 11 11 H 1.09002 * 109.84247 * 37.49903 * 10 9 8 12 12 C 1.53004 * 109.83737 * 158.40349 * 10 9 8 13 13 N 1.46499 * 109.47198 * 300.00121 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 S 1.81005 * 109.46906 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99828 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00390 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00444 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47406 * 89.99536 * 22 20 18 24 24 H 1.48502 * 109.46978 * 209.99777 * 22 20 18 25 25 H 1.48504 * 109.47081 * 329.99606 * 22 20 18 26 26 C 1.47399 * 110.99964 * 193.23415 * 5 4 3 27 27 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46704 * 300.00206 * 1 2 3 29 29 H 1.08995 * 109.46976 * 60.00154 * 1 2 3 30 30 H 1.08996 * 109.47651 * 60.00262 * 3 2 1 31 31 H 1.08999 * 109.47026 * 299.99382 * 3 2 1 32 32 H 1.09000 * 109.46938 * 304.99687 * 4 3 2 33 33 H 1.09000 * 109.47515 * 185.00116 * 4 3 2 34 34 H 1.08993 * 108.75612 * 323.05595 * 6 5 4 35 35 H 1.09000 * 108.65624 * 204.86827 * 6 5 4 36 36 H 1.09001 * 109.53998 * 332.15743 * 7 6 5 37 37 H 1.09005 * 109.60052 * 211.96158 * 7 6 5 38 38 H 1.09004 * 109.21423 * 166.31198 * 8 7 6 39 39 H 1.08998 * 109.20914 * 46.99262 * 8 7 6 40 40 H 1.09009 * 109.46730 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46846 * 60.00453 * 12 10 9 42 42 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 44 44 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 45 45 H 0.96995 * 120.00766 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.06226 * 72.72735 * 26 5 4 47 47 H 1.09001 * 109.05970 * 313.80785 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6928 1.4421 -2.4124 7 6 4.7619 2.4831 -2.6424 8 6 5.8053 1.9249 -3.6389 9 8 6.5898 0.9798 -3.0410 10 6 5.9487 -0.1976 -2.5305 11 1 5.1429 -0.4997 -3.1994 12 6 6.9692 -1.3304 -2.4025 13 7 7.5415 -1.6232 -3.7189 14 6 8.4651 -2.5959 -3.8509 15 8 8.8261 -3.2252 -2.8790 16 6 9.0492 -2.9013 -5.2060 17 16 10.2521 -4.2454 -5.0555 18 6 10.7606 -4.3905 -6.7363 19 1 10.3326 -3.7437 -7.4878 20 6 11.7112 -5.3362 -7.0946 21 7 12.0908 -5.4451 -8.3502 22 14 12.4511 -6.4557 -5.7949 23 1 11.6307 -7.6878 -5.6777 24 1 13.8370 -6.8190 -6.1854 25 1 12.4738 -5.7499 -4.4885 26 6 5.3871 0.1427 -1.1703 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9786 2.1765 0.0889 34 1 2.7422 1.9476 -2.2430 35 1 3.6064 0.8251 -3.3068 36 1 5.2505 2.7190 -1.6971 37 1 4.3106 3.3857 -3.0546 38 1 6.4346 2.7411 -3.9941 39 1 5.2875 1.4770 -4.4871 40 1 6.4760 -2.2214 -2.0138 41 1 7.7635 -1.0283 -1.7199 42 1 7.2524 -1.1201 -4.4962 43 1 8.2519 -3.2013 -5.8861 44 1 9.5449 -2.0127 -5.5968 45 1 12.7548 -6.1062 -8.6007 46 1 5.4591 -0.7336 -0.5260 47 1 5.9737 0.9519 -0.7353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149207607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:49 Heat of formation + Delta-G solvation = -142.226177 kcal Electronic energy + Delta-G solvation = -26365.858587 eV Core-core repulsion = 22481.418804 eV Total energy + Delta-G solvation = -3884.439783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42275 -40.43256 -38.95979 -37.23852 -36.12910 -34.66167 -33.63205 -32.21996 -31.07407 -29.04914 -27.85151 -27.40896 -27.03455 -25.32517 -23.62954 -22.33647 -21.77893 -20.73367 -19.88739 -18.14635 -17.91588 -17.87198 -17.58975 -17.13332 -17.03537 -16.94136 -16.46374 -16.33397 -15.91684 -15.65664 -15.49906 -15.32384 -14.91630 -14.66781 -14.44450 -13.90674 -13.82447 -13.56881 -13.48475 -13.34920 -13.30393 -12.99515 -12.91240 -12.83554 -12.66567 -12.45907 -12.28306 -11.92381 -11.85170 -11.72655 -11.29355 -11.15949 -11.03377 -10.60661 -10.52560 -10.43996 -10.15199 -9.20388 -8.98319 -8.50378 -6.21121 0.99682 1.32634 1.47941 1.56519 1.57680 2.19487 2.26897 2.52687 2.71517 2.86490 2.87711 2.97213 3.64173 3.76439 3.81588 3.93976 3.96237 4.04555 4.12399 4.20162 4.23918 4.35275 4.42648 4.48139 4.50431 4.50647 4.54863 4.57451 4.63051 4.66432 4.71314 4.82443 4.87333 4.90302 4.93874 4.96904 5.02797 5.23822 5.37018 5.71901 5.98938 6.04312 6.12565 6.36643 6.45126 6.57307 6.94714 7.18366 8.61938 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.001990 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.210155 B =14065.590560 C =14605.766795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.064 3.936 4 C 0.056 3.944 5 N -0.545 5.545 6 C 0.044 3.956 7 C -0.186 4.186 8 C 0.067 3.933 9 O -0.392 6.392 10 C 0.097 3.903 11 H 0.085 0.915 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.111 4.111 17 S -0.175 6.175 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.041 3.959 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.087 0.913 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.832 21.054 16.201 36.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.013 4.013 4 C -0.072 4.072 5 N -0.269 5.269 6 C -0.083 4.083 7 C -0.225 4.225 8 C -0.010 4.010 9 O -0.311 6.311 10 C 0.040 3.960 11 H 0.103 0.897 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.262 4.262 17 S 0.052 5.948 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.087 4.087 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.252 0.748 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.119 19.397 17.633 35.622 hybrid contribution -0.035 1.302 -1.446 1.946 sum -24.154 20.699 16.187 35.691 Atomic orbital electron populations 1.22847 0.80340 1.03280 1.00489 1.87968 1.20496 1.28431 1.95445 1.22705 0.92881 0.84807 1.00878 1.22140 0.94122 0.98662 0.92239 1.62143 1.18601 1.42606 1.03580 1.22177 0.98811 0.93455 0.93841 1.22812 0.98287 1.00519 1.00917 1.22033 0.94028 0.91194 0.93749 1.86498 1.38023 1.29580 1.76957 1.22015 0.93905 0.84579 0.95540 0.89702 1.21400 0.96227 0.96561 0.84898 1.45577 1.41844 1.36757 1.11853 1.19930 0.78921 0.79501 0.89497 1.90689 1.61192 1.51224 1.41016 1.23257 1.02062 1.02595 0.98241 1.84700 1.51298 1.46374 1.12443 1.22466 1.28532 1.24104 0.92567 0.91941 1.25570 0.95520 0.97625 0.97324 1.70012 1.31806 1.35772 1.17870 0.85861 0.79169 0.80312 0.80992 1.18650 1.18324 1.16098 1.22277 0.88064 1.01351 0.97023 0.89485 0.93246 0.93572 0.91599 0.92493 0.90374 0.92011 0.89829 0.91234 0.91819 0.88632 0.87971 0.93334 0.89615 0.91556 0.74831 0.86774 0.86957 0.91376 0.89501 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.58 10.65 -148.98 -1.59 -8.17 16 3 C 0.06 0.70 6.02 71.98 0.43 1.13 16 4 C 0.06 0.66 5.23 86.30 0.45 1.12 16 5 N -0.54 -7.80 4.69 -899.69 -4.22 -12.03 16 6 C 0.04 0.50 4.99 85.43 0.43 0.93 16 7 C -0.19 -1.83 5.63 30.52 0.17 -1.66 16 8 C 0.07 0.83 6.43 72.56 0.47 1.30 16 9 O -0.39 -6.83 9.38 -100.61 -0.94 -7.78 16 10 C 0.10 1.62 2.37 29.96 0.07 1.69 16 11 H 0.09 1.36 6.78 -2.39 -0.02 1.34 16 12 C 0.13 2.93 5.16 86.38 0.45 3.38 16 13 N -0.71 -17.80 5.46 -463.05 -2.53 -20.33 16 14 C 0.54 18.96 7.85 87.66 0.69 19.65 16 15 O -0.56 -24.51 15.86 -3.04 -0.05 -24.55 16 16 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 17 S -0.17 -8.96 18.55 -56.49 -1.05 -10.01 16 18 C -0.53 -31.15 10.04 67.95 0.68 -30.47 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 20 C 0.04 2.67 5.50 84.86 0.47 3.13 16 21 N -0.92 -56.21 13.97 21.65 0.30 -55.90 16 22 Si 0.91 45.48 27.74 68.60 1.90 47.38 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 26 C 0.04 0.63 4.62 85.57 0.40 1.03 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.52 6.07 -2.39 -0.01 0.51 16 32 H 0.08 1.03 8.04 -2.39 -0.02 1.01 16 33 H 0.06 0.58 7.58 -2.39 -0.02 0.56 16 34 H 0.08 0.78 5.75 -2.39 -0.01 0.77 16 35 H 0.07 0.87 6.54 -2.39 -0.02 0.85 16 36 H 0.06 0.76 6.69 -2.39 -0.02 0.74 16 37 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.05 0.54 7.72 -2.39 -0.02 0.52 16 40 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.42 8.27 8.36 -92.71 -0.77 7.49 16 43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 45 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.09 1.39 7.74 -2.39 -0.02 1.37 16 47 H 0.05 0.79 7.12 -2.39 -0.02 0.77 16 Total: -1.00 -75.39 384.38 -1.63 -77.02 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.15 Total: 15.45 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.39 Total: -1.08 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -6.44 Total: -88.26 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.58 Total: -40.50 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -75.39 -1.63 -77.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.210 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds