Wall clock time and date at job start Sat Apr 11 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48497 * 109.47368 * 90.00084 * 3 2 1 5 5 H 1.48504 * 109.47240 * 330.00023 * 3 2 1 6 6 H 1.48502 * 109.47208 * 210.00000 * 3 2 1 7 7 C 1.38811 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99338 * 208.51398 * 7 2 1 9 9 N 1.36937 * 120.00595 * 28.51211 * 7 2 1 10 10 C 1.43463 * 118.94080 * 210.15411 * 9 7 2 11 11 C 1.53236 * 108.26402 * 273.77581 * 10 9 7 12 12 C 1.47134 * 111.81618 * 281.68304 * 11 10 9 13 13 N 1.48210 * 110.34660 * 58.22552 * 12 11 10 14 14 C 1.34779 * 119.97482 * 102.50805 * 13 12 11 15 15 O 1.21283 * 119.99347 * 354.32504 * 14 13 12 16 16 C 1.50701 * 120.00387 * 174.32684 * 14 13 12 17 17 C 1.50703 * 115.54466 * 287.34255 * 16 14 13 18 18 C 1.38227 * 120.00668 * 125.07816 * 17 16 14 19 19 C 1.38226 * 120.01889 * 179.71859 * 18 17 16 20 20 C 1.38268 * 120.05162 * 0.54958 * 19 18 17 21 21 C 1.38172 * 120.02581 * 359.72721 * 20 19 18 22 22 C 1.38427 * 120.01694 * 305.34694 * 17 16 14 23 23 F 1.35103 * 120.02463 * 359.97438 * 22 17 16 24 24 C 1.52990 * 117.50093 * 141.63369 * 16 14 13 25 25 C 1.52997 * 117.49619 * 73.00992 * 16 14 13 26 26 C 1.43625 * 120.05589 * 282.49154 * 13 12 11 27 27 C 1.48855 * 118.93364 * 30.42178 * 9 7 2 28 28 H 0.96998 * 119.99892 * 186.64865 * 1 2 3 29 29 H 1.09004 * 109.76057 * 33.24975 * 10 9 7 30 30 H 1.09001 * 109.76030 * 154.01094 * 10 9 7 31 31 H 1.09001 * 109.07254 * 161.04465 * 11 10 9 32 32 H 1.09008 * 108.90254 * 42.20618 * 11 10 9 33 33 H 1.09005 * 109.32478 * 297.95938 * 12 11 10 34 34 H 1.09001 * 109.32974 * 178.49329 * 12 11 10 35 35 H 1.07997 * 119.99137 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.97236 * 180.25179 * 19 18 17 37 37 H 1.08003 * 119.98763 * 179.74285 * 20 19 18 38 38 H 1.08001 * 120.01418 * 180.02562 * 21 20 19 39 39 H 1.09005 * 117.49659 * 0.02562 * 24 16 14 40 40 H 1.09001 * 117.49794 * 145.01935 * 24 16 14 41 41 H 1.09007 * 117.49794 * 214.97891 * 25 16 14 42 42 H 1.08992 * 117.50096 * 0.02562 * 25 16 14 43 43 H 1.09002 * 108.87579 * 329.87911 * 26 13 12 44 44 H 1.09000 * 108.79291 * 211.39415 * 26 13 12 45 45 H 1.09003 * 109.48214 * 260.59900 * 27 9 7 46 46 H 1.09002 * 109.48491 * 20.63666 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 2.9920 -1.2590 0.4460 9 7 1.4501 -2.3160 -0.5671 10 6 1.7886 -3.6071 -0.0413 11 6 3.0716 -4.0847 -0.7298 12 6 2.8067 -4.6030 -2.0811 13 7 2.1641 -3.5606 -2.9160 14 6 2.8907 -2.8871 -3.8298 15 8 4.0892 -3.0600 -3.8984 16 6 2.2140 -1.9194 -4.7661 17 6 1.3776 -2.5440 -5.8531 18 6 0.0516 -2.1818 -5.9993 19 6 -0.7142 -2.7502 -6.9998 20 6 -0.1581 -3.6898 -7.8482 21 6 1.1655 -4.0575 -7.7003 22 6 1.9353 -3.4846 -6.7019 23 9 3.2298 -3.8429 -6.5567 24 6 2.9566 -0.6245 -5.1014 25 6 1.7344 -0.5893 -4.1817 26 6 0.7676 -3.2676 -2.7523 27 6 0.5144 -2.1482 -1.7125 28 1 -0.4850 -0.8344 0.0973 29 1 1.9575 -3.5348 1.0331 30 1 0.9799 -4.3101 -0.2414 31 1 3.5254 -4.8735 -0.1297 32 1 3.7669 -3.2482 -0.8004 33 1 2.1468 -5.4679 -2.0127 34 1 3.7469 -4.9055 -2.5422 35 1 -0.3850 -1.4515 -5.3342 36 1 -1.7490 -2.4637 -7.1160 37 1 -0.7586 -4.1363 -8.6270 38 1 1.5997 -4.7912 -8.3633 39 1 3.9348 -0.4727 -4.6451 40 1 2.8403 -0.2240 -6.1085 41 1 0.8140 -0.1656 -4.5838 42 1 1.9086 -0.4140 -3.1202 43 1 0.2530 -4.1725 -2.4288 44 1 0.3594 -2.9551 -3.7135 45 1 -0.5133 -2.2104 -1.3545 46 1 0.6794 -1.1762 -2.1774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983512521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:49 Heat of formation + Delta-G solvation = 8.593319 kcal Electronic energy + Delta-G solvation = -30896.532547 eV Core-core repulsion = 26895.561626 eV Total energy + Delta-G solvation = -4000.970921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.75967 -40.50551 -38.89991 -37.25850 -36.17326 -34.37285 -32.69712 -30.92284 -30.83203 -30.50012 -27.68822 -25.77487 -24.42494 -23.63988 -23.21135 -22.69646 -21.75281 -20.80667 -19.77346 -18.36154 -17.80726 -17.19483 -16.74413 -16.23089 -16.04496 -15.58133 -15.45083 -15.07643 -14.60090 -14.37882 -14.22709 -14.00627 -13.67183 -13.27374 -13.19008 -13.09956 -12.80490 -12.57292 -12.43420 -12.27252 -12.01567 -11.86021 -11.48548 -11.26649 -11.13048 -11.08759 -10.72774 -10.62903 -10.36181 -10.28500 -10.21668 -10.10859 -9.96232 -9.41146 -9.36840 -8.99066 -8.62920 -8.30601 -8.08967 -6.86676 -6.07802 -3.27085 1.01503 1.07287 3.01159 3.35226 3.40751 3.47804 3.52103 3.67699 3.96063 4.24360 4.49412 4.58044 4.64824 4.76061 4.88403 4.99648 5.08992 5.13410 5.22864 5.26506 5.36915 5.47109 5.56738 5.62352 5.71946 5.82638 5.87163 5.90054 5.95221 5.99790 6.01435 6.04111 6.17384 6.19513 6.22605 6.30592 6.38180 6.41124 6.48000 6.69663 6.76732 6.78453 6.95336 7.01307 7.21472 7.92447 8.10404 8.56656 8.65693 9.15371 9.83193 10.25155 11.15800 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.005098 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.683506 B = 5490.625052 C = 6046.069837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.014 4.014 3 Si 1.047 2.953 4 H -0.294 1.294 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.353 4.353 8 H 0.050 0.950 9 N -0.591 5.591 10 C 0.164 3.836 11 C -0.168 4.168 12 C 0.130 3.870 13 N -0.579 5.579 14 C 0.563 3.437 15 O -0.539 6.539 16 C -0.124 4.124 17 C -0.071 4.071 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.095 4.095 21 C -0.157 4.157 22 C 0.110 3.890 23 F -0.127 7.127 24 C -0.135 4.135 25 C -0.152 4.152 26 C 0.088 3.912 27 C 0.132 3.868 28 H 0.268 0.732 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 -7.141 -14.179 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.218 4.218 3 Si 0.876 3.124 4 H -0.221 1.221 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.482 4.482 8 H 0.068 0.932 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.209 4.209 12 C 0.009 3.991 13 N -0.309 5.309 14 C 0.349 3.651 15 O -0.416 6.416 16 C -0.127 4.127 17 C -0.072 4.072 18 C -0.103 4.103 19 C -0.147 4.147 20 C -0.113 4.113 21 C -0.176 4.176 22 C 0.090 3.910 23 F -0.106 7.106 24 C -0.172 4.172 25 C -0.189 4.189 26 C -0.038 4.038 27 C 0.006 3.994 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.266 -5.626 -14.274 15.509 hybrid contribution 0.393 -1.803 0.257 1.863 sum -1.873 -7.429 -14.017 15.974 Atomic orbital electron populations 1.70775 1.06677 1.30134 1.47032 1.25666 0.96265 1.01145 0.98681 0.83830 0.75242 0.76596 0.76709 1.22121 1.21003 1.21763 1.19850 0.99619 0.89891 1.38863 0.93240 1.43626 1.53495 1.01792 1.32433 1.20184 0.92771 0.87441 0.96019 1.21734 1.02392 1.00983 0.95768 1.20559 0.98000 0.88847 0.91685 1.47218 1.10169 1.37582 1.35978 1.19100 0.86274 0.79730 0.79954 1.90631 1.14365 1.64798 1.71827 1.19888 1.04449 0.90090 0.98250 1.18924 0.94451 0.97929 0.95903 1.21074 0.91937 0.99451 0.97801 1.21185 1.00373 0.97550 0.95603 1.21001 0.94067 0.97068 0.99160 1.21130 0.95044 1.02419 0.99000 1.17628 0.79480 0.97015 0.96865 1.91578 1.33665 1.90325 1.94994 1.23028 0.97912 0.95363 1.00925 1.23468 0.98685 0.94957 1.01784 1.21997 0.81293 1.00023 1.00503 1.22266 0.93057 0.97013 0.87050 0.92141 0.93508 0.95242 0.92634 0.91162 0.92204 0.90589 0.84343 0.85106 0.85138 0.84844 0.87593 0.88209 0.87683 0.85731 0.92222 0.90996 0.95083 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.50 12.78 55.49 0.71 -24.79 16 2 C -0.01 -0.39 4.55 -17.43 -0.08 -0.47 16 3 Si 1.05 24.68 30.00 -169.99 -5.10 19.58 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.35 -9.47 9.04 -15.06 -0.14 -9.60 16 8 H 0.05 1.40 7.97 -52.48 -0.42 0.98 16 9 N -0.59 -13.88 2.34 -172.35 -0.40 -14.28 16 10 C 0.16 3.36 5.59 -5.53 -0.03 3.33 16 11 C -0.17 -3.16 5.63 -29.43 -0.17 -3.32 16 12 C 0.13 2.31 5.66 -5.92 -0.03 2.27 16 13 N -0.58 -10.86 2.46 -176.66 -0.43 -11.30 16 14 C 0.56 11.23 5.96 -10.98 -0.07 11.16 16 15 O -0.54 -12.38 16.11 5.56 0.09 -12.29 16 16 C -0.12 -2.07 0.86 -156.82 -0.14 -2.21 16 17 C -0.07 -1.02 4.44 -104.55 -0.46 -1.48 16 18 C -0.08 -1.00 7.99 -39.59 -0.32 -1.31 16 19 C -0.13 -1.23 10.04 -39.57 -0.40 -1.63 16 20 C -0.09 -0.88 10.04 -39.59 -0.40 -1.27 16 21 C -0.16 -1.76 10.03 -39.52 -0.40 -2.16 16 22 C 0.11 1.59 7.11 -39.42 -0.28 1.31 16 23 F -0.13 -2.19 15.88 2.25 0.04 -2.15 16 24 C -0.13 -2.14 9.79 -26.74 -0.26 -2.40 16 25 C -0.15 -2.49 7.63 -26.73 -0.20 -2.70 16 26 C 0.09 1.53 4.87 -4.58 -0.02 1.51 16 27 C 0.13 2.79 5.00 -1.75 -0.01 2.78 16 28 H 0.27 7.61 6.82 -40.82 -0.28 7.33 16 29 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 30 H 0.03 0.55 7.58 -51.93 -0.39 0.16 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.58 7.91 -51.92 -0.41 1.17 16 33 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.08 1.39 7.19 -51.93 -0.37 1.01 16 35 H 0.14 1.52 6.45 -52.49 -0.34 1.18 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.82 8.12 -51.93 -0.42 1.40 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 1.44 6.59 -51.93 -0.34 1.10 16 42 H 0.12 2.52 6.37 -51.93 -0.33 2.19 16 43 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 44 H 0.07 1.14 4.49 -51.93 -0.23 0.90 16 45 H 0.03 0.69 7.26 -51.93 -0.38 0.31 16 46 H 0.08 1.72 3.97 -51.93 -0.21 1.52 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -31.74 360.12 -9.34 -41.08 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.27 Total: 4.93 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.40 Total: -6.19 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.13 Total: -50.37 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.10 Total: 19.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.74 -9.34 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983512521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.673 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds