Wall clock time and date at job start Sat Apr 11 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47549 * 270.00064 * 3 2 1 5 5 H 1.48503 * 109.46983 * 30.00428 * 3 2 1 6 6 H 1.48504 * 109.47140 * 150.00202 * 3 2 1 7 7 C 1.38807 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00244 * 163.37585 * 7 2 1 9 9 N 1.36938 * 119.99855 * 343.36928 * 7 2 1 10 10 C 1.47023 * 120.66343 * 153.55127 * 9 7 2 11 11 C 1.53194 * 108.84795 * 125.97861 * 10 9 7 12 12 C 1.53127 * 109.32215 * 55.05134 * 11 10 9 13 13 C 1.52495 * 109.60329 * 299.47423 * 12 11 10 14 14 C 1.54155 * 110.06183 * 181.75280 * 13 12 11 15 15 C 1.55040 * 102.73577 * 97.47677 * 14 13 12 16 16 N 1.48161 * 103.31549 * 36.99178 * 15 14 13 17 17 C 1.34777 * 127.02740 * 140.99835 * 16 15 14 18 18 O 1.21573 * 120.00083 * 353.86959 * 17 16 15 19 19 C 1.47699 * 119.99950 * 173.87674 * 17 16 15 20 20 C 1.39661 * 120.16620 * 351.17300 * 19 17 16 21 21 C 1.37849 * 119.87842 * 179.97438 * 20 19 17 22 22 C 1.38464 * 120.22002 * 0.02562 * 21 20 19 23 23 C 1.38201 * 120.33505 * 0.02562 * 22 21 20 24 24 C 1.38320 * 120.12017 * 359.69600 * 23 22 21 25 25 F 1.35100 * 120.11485 * 180.29746 * 24 23 22 26 26 C 1.47608 * 105.94251 * 320.97010 * 16 15 14 27 27 C 1.47040 * 120.68587 * 333.53332 * 9 7 2 28 28 H 0.96999 * 119.99853 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.61591 * 6.15200 * 10 9 7 30 30 H 1.09000 * 109.55959 * 245.76987 * 10 9 7 31 31 H 1.09000 * 109.49994 * 295.09037 * 11 10 9 32 32 H 1.08998 * 109.49983 * 175.02086 * 11 10 9 33 33 H 1.09003 * 109.44533 * 59.50925 * 12 11 10 34 34 H 1.08996 * 109.45270 * 179.45681 * 12 11 10 35 35 H 1.08994 * 110.75955 * 215.79042 * 14 13 12 36 36 H 1.09010 * 110.75680 * 339.17025 * 14 13 12 37 37 H 1.08996 * 110.65472 * 278.53002 * 15 14 13 38 38 H 1.09003 * 110.78831 * 155.51330 * 15 14 13 39 39 H 1.08005 * 120.05612 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.88980 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.83280 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.94002 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.97517 * 266.00889 * 26 16 15 44 44 H 1.09009 * 109.97042 * 144.73777 * 26 16 15 45 45 H 1.08995 * 109.58219 * 113.02605 * 27 9 7 46 46 H 1.08996 * 109.69171 * 352.67834 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0564 -1.2215 -0.2681 9 7 1.3686 -2.3634 0.3384 10 6 1.8376 -3.6575 -0.1781 11 6 2.0738 -4.6051 1.0021 12 6 0.7957 -4.6989 1.8403 13 6 0.4326 -3.3180 2.3757 14 6 -0.8286 -3.4076 3.2575 15 6 -0.2399 -3.4746 4.6902 16 7 0.9287 -2.5664 4.6218 17 6 1.3462 -1.7079 5.5732 18 8 0.6799 -1.5412 6.5763 19 6 2.6133 -0.9696 5.3971 20 6 3.4712 -1.2895 4.3425 21 6 4.6520 -0.5962 4.1835 22 6 4.9904 0.4156 5.0660 23 6 4.1486 0.7388 6.1133 24 6 2.9576 0.0561 6.2827 25 9 2.1320 0.3763 7.3030 26 6 1.5425 -2.7944 3.2989 27 6 0.1968 -2.3415 1.2263 28 1 -0.4850 0.8401 -0.0004 29 1 2.7696 -3.5169 -0.7256 30 1 1.0831 -4.0810 -0.8410 31 1 2.8864 -4.2220 1.6194 32 1 2.3367 -5.5944 0.6275 33 1 -0.0185 -5.0732 1.2197 34 1 0.9584 -5.3802 2.6753 35 1 -1.4490 -2.5197 3.1359 36 1 -1.3956 -4.3104 3.0302 37 1 0.0759 -4.4901 4.9290 38 1 -0.9631 -3.1161 5.4228 39 1 3.2099 -2.0786 3.6529 40 1 5.3154 -0.8431 3.3677 41 1 5.9173 0.9544 4.9357 42 1 4.4187 1.5295 6.7977 43 1 2.3389 -3.5342 3.3804 44 1 1.9418 -1.8586 2.9075 45 1 -0.6901 -2.6415 0.6683 46 1 0.0558 -1.3365 1.6238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040045751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:15 Heat of formation + Delta-G solvation = -8.712498 kcal Electronic energy + Delta-G solvation = -30439.328406 eV Core-core repulsion = 26437.607048 eV Total energy + Delta-G solvation = -4001.721357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.70803 -40.47253 -38.83407 -37.84297 -35.74039 -33.18557 -32.21896 -30.90574 -30.43390 -30.01201 -28.83807 -26.10737 -25.37196 -24.07061 -22.80975 -22.31923 -22.23621 -20.48609 -19.65869 -18.48729 -17.21739 -17.14150 -16.66293 -16.28133 -15.80375 -15.46223 -15.30581 -14.85971 -14.80293 -14.13331 -14.03337 -13.86098 -13.75304 -13.23089 -13.11314 -13.01812 -12.84513 -12.47433 -12.28731 -12.09987 -12.04830 -11.80796 -11.74106 -11.30844 -11.16397 -10.99382 -10.83617 -10.71412 -10.46224 -10.30852 -10.18003 -9.89437 -9.70658 -9.49116 -9.46975 -9.08541 -8.73621 -8.55483 -8.36707 -6.76529 -5.86352 -3.28052 0.79036 1.21767 2.95947 3.13077 3.32104 3.39548 3.41442 3.79190 4.26216 4.42310 4.52552 4.71339 4.86327 4.95740 5.05454 5.18366 5.21813 5.27503 5.37017 5.41420 5.48102 5.55572 5.64608 5.70970 5.78946 5.87472 5.94971 5.98846 6.04441 6.07071 6.12238 6.19658 6.26388 6.32276 6.35374 6.37398 6.39487 6.56800 6.64813 6.71589 6.81226 6.84117 6.91042 7.23412 7.57688 7.71759 7.75057 8.33990 8.35772 9.13056 9.76807 10.32945 11.21846 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.006200 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.440042 B = 4515.082980 C = 6043.431383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.137 4.137 12 C -0.095 4.095 13 C -0.094 4.094 14 C -0.124 4.124 15 C 0.107 3.893 16 N -0.612 5.612 17 C 0.577 3.423 18 O -0.539 6.539 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.136 4.136 22 C -0.068 4.068 23 C -0.172 4.172 24 C 0.153 3.847 25 F -0.120 7.120 26 C 0.104 3.896 27 C 0.185 3.815 28 H 0.254 0.746 29 H 0.053 0.947 30 H 0.017 0.983 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.167 0.833 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.022 0.978 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -6.352 7.530 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.723 3.277 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.017 3.983 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.096 4.096 14 C -0.163 4.163 15 C -0.015 4.015 16 N -0.345 5.345 17 C 0.367 3.633 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.092 4.092 21 C -0.154 4.154 22 C -0.087 4.087 23 C -0.191 4.191 24 C 0.133 3.867 25 F -0.098 7.098 26 C -0.018 4.018 27 C 0.059 3.941 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.184 0.816 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.040 0.960 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.405 -6.027 8.157 11.996 hybrid contribution 0.261 1.010 -0.006 1.043 sum 6.666 -5.017 8.151 11.664 Atomic orbital electron populations 1.69991 1.05218 1.25581 1.53651 1.24986 0.95224 0.98251 1.00899 0.86430 0.79382 0.84090 0.77784 1.21380 1.21571 1.20232 1.19139 0.92495 0.84548 1.42147 0.91522 1.44118 1.33489 1.01309 1.52499 1.20932 0.97535 0.86991 0.92856 1.22079 0.97229 0.99174 0.99180 1.21400 0.98215 0.95172 0.98518 1.21871 0.93074 0.97625 0.97047 1.22736 0.97566 1.02783 0.93195 1.22472 0.87767 0.92818 0.98415 1.48714 1.30175 1.39195 1.16448 1.17618 0.84665 0.78627 0.82355 1.90792 1.56695 1.65077 1.29224 1.19993 0.97766 1.00258 0.99272 1.22508 0.92451 0.99590 0.94683 1.21254 0.97423 0.96728 0.99968 1.21221 0.98805 0.95811 0.92821 1.21085 0.94029 1.02473 1.01468 1.17703 0.88893 0.94399 0.85714 1.91567 1.70845 1.91291 1.56079 1.22754 0.95892 1.02125 0.81023 1.20823 0.88495 0.97519 0.87276 0.93547 0.92854 0.96485 0.92419 0.92993 0.92133 0.93378 0.90417 0.90367 0.91353 0.90149 0.81635 0.84556 0.84762 0.84358 0.91713 0.87809 0.96012 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 11.07 55.49 0.61 -24.29 16 2 C 0.01 0.14 4.95 -17.43 -0.09 0.05 16 3 Si 0.89 20.80 29.58 -169.99 -5.03 15.77 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.25 -6.32 9.61 -15.06 -0.14 -6.47 16 8 H 0.07 1.62 7.88 -52.49 -0.41 1.21 16 9 N -0.59 -13.16 2.77 -172.49 -0.48 -13.64 16 10 C 0.14 2.66 6.51 -3.66 -0.02 2.63 16 11 C -0.14 -2.03 5.87 -26.57 -0.16 -2.19 16 12 C -0.10 -1.37 4.40 -26.92 -0.12 -1.49 16 13 C -0.09 -1.55 0.62 -154.05 -0.09 -1.64 16 14 C -0.12 -1.84 6.15 -25.05 -0.15 -2.00 16 15 C 0.11 1.59 7.12 -2.05 -0.01 1.57 16 16 N -0.61 -10.41 3.30 -170.99 -0.56 -10.98 16 17 C 0.58 10.96 7.82 -12.40 -0.10 10.86 16 18 O -0.54 -11.64 15.58 5.30 0.08 -11.56 16 19 C -0.17 -2.91 5.87 -104.91 -0.62 -3.52 16 20 C -0.07 -1.13 8.38 -39.19 -0.33 -1.46 16 21 C -0.14 -1.76 10.03 -39.64 -0.40 -2.16 16 22 C -0.07 -0.80 10.04 -39.51 -0.40 -1.20 16 23 C -0.17 -2.23 10.01 -39.56 -0.40 -2.63 16 24 C 0.15 2.52 7.28 -38.96 -0.28 2.24 16 25 F -0.12 -2.17 15.60 2.25 0.04 -2.13 16 26 C 0.10 1.70 3.59 -3.14 -0.01 1.68 16 27 C 0.18 3.97 3.60 -3.93 -0.01 3.95 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.85 6.65 -51.93 -0.35 0.50 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 36 H 0.08 0.98 7.83 -51.92 -0.41 0.58 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.22 7.81 -51.93 -0.41 0.82 16 39 H 0.17 2.47 3.42 -52.48 -0.18 2.29 16 40 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.06 0.95 5.86 -51.93 -0.30 0.65 16 44 H 0.10 1.97 5.37 -51.92 -0.28 1.69 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.33 5.96 -51.93 -0.31 2.02 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -30.29 358.93 -9.66 -39.96 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.40 Total: 3.22 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.33 Total: -1.76 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.43 Total: -48.91 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.29 -9.66 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040045751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.244 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds