Wall clock time and date at job start Sat Apr 11 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00380 * 2 1 4 4 H 1.48508 * 109.46668 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47327 * 119.99744 * 3 2 1 6 6 H 1.48498 * 109.46911 * 240.00362 * 3 2 1 7 7 C 1.38812 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00102 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46887 * 125.58334 * 0.02562 * 9 7 2 11 11 C 1.54054 * 107.71154 * 182.96564 * 10 9 7 12 12 C 1.54070 * 103.73983 * 17.13331 * 11 10 9 13 13 H 1.09002 * 109.15577 * 86.46012 * 12 11 10 14 14 C 1.47661 * 125.58219 * 179.71560 * 9 7 2 15 15 H 1.08997 * 110.56656 * 38.35959 * 14 9 7 16 16 C 1.50745 * 107.73515 * 277.34080 * 14 9 7 17 17 C 1.52936 * 109.69118 * 187.98161 * 16 14 9 18 18 C 1.53059 * 108.49631 * 65.76373 * 17 16 14 19 19 N 1.44190 * 111.76422 * 207.39679 * 12 11 10 20 20 C 1.34775 * 117.75685 * 266.46080 * 19 12 11 21 21 O 1.21288 * 119.99402 * 175.71400 * 20 19 12 22 22 C 1.50700 * 120.00714 * 355.72448 * 20 19 12 23 23 H 1.08999 * 109.46710 * 16.28075 * 22 20 19 24 24 F 1.39899 * 109.46719 * 256.28772 * 22 20 19 25 25 C 1.50693 * 109.47320 * 136.28349 * 22 20 19 26 26 C 1.38241 * 120.00059 * 64.73165 * 25 22 20 27 27 C 1.38235 * 120.00045 * 179.76636 * 26 25 22 28 28 C 1.38232 * 119.99832 * 0.48078 * 27 26 25 29 29 C 1.38234 * 120.00195 * 359.78971 * 28 27 26 30 30 C 1.38231 * 120.00049 * 359.96056 * 29 28 27 31 31 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.80972 * 302.51973 * 10 9 7 33 33 H 1.09006 * 109.80906 * 63.41709 * 10 9 7 34 34 H 1.08998 * 110.57371 * 135.69947 * 11 10 9 35 35 H 1.09003 * 110.57152 * 258.42573 * 11 10 9 36 36 H 1.09003 * 109.65427 * 67.79752 * 16 14 9 37 37 H 1.09009 * 109.22864 * 307.90416 * 16 14 9 38 38 H 1.08999 * 109.63461 * 306.06230 * 17 16 14 39 39 H 1.08999 * 109.80069 * 185.56455 * 17 16 14 40 40 H 1.08993 * 109.45612 * 186.17147 * 18 17 16 41 41 H 1.09001 * 109.44031 * 66.21266 * 18 17 16 42 42 H 1.07999 * 119.99694 * 359.97438 * 26 25 22 43 43 H 1.08004 * 119.99776 * 180.25083 * 27 26 25 44 44 H 1.08001 * 119.99933 * 179.77299 * 28 27 26 45 45 H 1.07999 * 119.99764 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00558 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1364 -2.5310 -0.0005 11 6 -0.4603 -4.0351 0.0758 12 6 0.8584 -4.6694 0.5580 13 1 0.8899 -4.6447 1.6473 14 6 1.9359 -3.7326 -0.0049 15 1 2.8253 -3.7519 0.6249 16 6 2.2872 -4.0716 -1.4311 17 6 2.7392 -5.5301 -1.5177 18 6 1.5478 -6.4287 -1.1775 19 7 0.9907 -6.0335 0.1099 20 6 0.5700 -7.0099 0.9383 21 8 0.5899 -8.1660 0.5722 22 6 0.0747 -6.6652 2.3192 23 1 -0.1440 -5.5986 2.3710 24 9 1.0584 -6.9857 3.2609 25 6 -1.1777 -7.4497 2.6140 26 6 -1.1250 -8.8282 2.7027 27 6 -2.2729 -9.5475 2.9780 28 6 -3.4754 -8.8891 3.1547 29 6 -3.5292 -7.5110 3.0605 30 6 -2.3804 -6.7913 2.7904 31 1 -0.4850 0.8401 0.0004 32 1 -0.5584 -2.0178 0.8636 33 1 -0.5480 -2.1106 -0.9182 34 1 -1.2590 -4.2189 0.7944 35 1 -0.7352 -4.4181 -0.9070 36 1 3.0919 -3.4218 -1.7749 37 1 1.4097 -3.9261 -2.0613 38 1 3.5458 -5.7064 -0.8061 39 1 3.0870 -5.7496 -2.5271 40 1 1.8783 -7.4661 -1.1271 41 1 0.7850 -6.3277 -1.9496 42 1 -0.1863 -9.3430 2.5603 43 1 -2.2309 -10.6243 3.0512 44 1 -4.3730 -9.4513 3.3661 45 1 -4.4688 -6.9966 3.1982 46 1 -2.4224 -5.7147 2.7163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049756862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:50 Heat of formation + Delta-G solvation = -18.199958 kcal Electronic energy + Delta-G solvation = -29695.550698 eV Core-core repulsion = 25693.417934 eV Total energy + Delta-G solvation = -4002.132764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -47.95584 -40.63220 -39.20634 -38.10996 -35.19510 -33.51475 -32.27804 -32.16547 -31.00236 -29.16897 -28.70489 -27.31244 -24.69976 -24.36167 -22.75108 -22.43878 -21.65992 -20.54551 -20.06682 -18.38270 -17.85470 -17.29384 -17.00747 -16.29040 -16.04822 -15.60041 -14.97824 -14.83493 -14.74456 -14.41480 -14.29792 -14.20610 -13.77553 -13.51970 -13.45344 -13.09014 -12.82686 -12.75158 -12.50202 -12.29027 -12.10591 -11.94380 -11.59153 -11.24231 -11.14169 -11.06217 -10.90527 -10.82367 -10.72568 -10.52358 -10.20606 -10.11110 -9.96691 -9.71243 -9.57687 -9.00724 -8.97120 -8.68408 -8.47956 -6.96857 -5.79720 -3.14730 1.09251 1.31314 2.40130 2.90498 3.35978 3.40851 3.41564 3.64692 4.15532 4.23781 4.43303 4.50255 4.84622 4.89193 4.92659 5.01468 5.13536 5.16153 5.17391 5.21619 5.37604 5.39749 5.44693 5.49705 5.54518 5.59370 5.76663 5.79806 5.94381 5.98228 6.05635 6.07786 6.15535 6.24047 6.29589 6.35985 6.38631 6.42694 6.44102 6.66049 6.76297 6.84009 6.94703 7.33999 7.46630 7.48510 7.72592 8.02970 8.15768 9.12251 9.71669 10.35241 11.31222 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.003576 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.954218 B = 7828.932503 C = 8838.529332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.179 3.821 11 C -0.157 4.157 12 C 0.119 3.881 13 H 0.088 0.912 14 C 0.162 3.838 15 H 0.056 0.944 16 C -0.128 4.128 17 C -0.132 4.132 18 C 0.116 3.884 19 N -0.576 5.576 20 C 0.494 3.506 21 O -0.525 6.525 22 C 0.117 3.883 23 H 0.117 0.883 24 F -0.184 7.184 25 C -0.124 4.124 26 C -0.069 4.069 27 C -0.129 4.129 28 C -0.109 4.109 29 C -0.127 4.127 30 C -0.093 4.093 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 -15.324 3.292 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.054 3.946 11 C -0.196 4.196 12 C 0.015 3.985 13 H 0.106 0.894 14 C 0.054 3.946 15 H 0.074 0.926 16 C -0.168 4.168 17 C -0.171 4.171 18 C -0.006 4.006 19 N -0.307 5.307 20 C 0.279 3.721 21 O -0.401 6.401 22 C 0.078 3.922 23 H 0.134 0.866 24 F -0.164 7.164 25 C -0.124 4.124 26 C -0.087 4.087 27 C -0.147 4.147 28 C -0.127 4.127 29 C -0.145 4.145 30 C -0.112 4.112 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.885 -15.638 3.095 16.408 hybrid contribution 0.450 1.042 -0.042 1.136 sum -3.435 -14.596 3.053 15.302 Atomic orbital electron populations 1.69931 1.04877 1.25299 1.56669 1.24783 0.95708 0.97646 1.01930 0.86199 0.78480 0.83116 0.77943 1.21591 1.21092 1.21168 1.18962 0.90434 0.82038 1.44339 0.90386 1.44518 1.01361 0.99205 1.87088 1.21076 0.84457 0.87461 1.01600 1.23134 0.95647 1.00034 1.00800 1.21561 0.98049 0.79958 0.98980 0.89405 1.20516 0.93822 0.85975 0.94312 0.92560 1.21721 1.01747 0.93745 0.99607 1.21877 0.97081 0.96508 1.01654 1.21380 0.95851 0.99604 0.83788 1.47148 1.59874 1.06240 1.17424 1.20760 0.78507 0.85908 0.86925 1.90667 1.53933 1.19361 1.76178 1.20527 0.84968 1.01555 0.85187 0.86553 1.92901 1.63521 1.94687 1.65322 1.19761 0.93762 0.94582 1.04338 1.21094 0.99214 0.93072 0.95309 1.21154 0.92643 1.00019 1.00836 1.21239 0.97842 0.94672 0.98914 1.21102 0.98198 0.94258 1.00920 1.21075 0.91800 1.00291 0.97991 0.93607 0.92717 0.93938 0.91975 0.91801 0.91477 0.91831 0.91681 0.90907 0.89474 0.91858 0.85157 0.85816 0.85957 0.85587 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.59 10.29 55.49 0.57 -25.02 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -5.97 10.26 -15.06 -0.15 -6.12 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.86 2.91 -164.83 -0.48 -14.34 16 10 C 0.18 3.97 5.39 -3.28 -0.02 3.96 16 11 C -0.16 -2.67 6.40 -25.62 -0.16 -2.84 16 12 C 0.12 1.95 2.42 -68.35 -0.17 1.79 16 13 H 0.09 1.40 5.58 -51.93 -0.29 1.11 16 14 C 0.16 3.04 3.16 -68.18 -0.22 2.82 16 15 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -2.16 5.22 -27.89 -0.15 -2.31 16 17 C -0.13 -1.79 6.09 -26.73 -0.16 -1.95 16 18 C 0.12 1.62 6.22 -4.42 -0.03 1.59 16 19 N -0.58 -8.78 2.80 -167.42 -0.47 -9.25 16 20 C 0.49 7.76 6.93 -10.99 -0.08 7.69 16 21 O -0.53 -9.20 14.40 5.55 0.08 -9.12 16 22 C 0.12 1.66 3.36 -29.04 -0.10 1.56 16 23 H 0.12 1.53 5.15 -51.93 -0.27 1.26 16 24 F -0.18 -2.82 16.92 2.25 0.04 -2.78 16 25 C -0.12 -1.66 5.00 -104.62 -0.52 -2.19 16 26 C -0.07 -0.91 8.55 -39.58 -0.34 -1.24 16 27 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 28 C -0.11 -1.08 10.05 -39.59 -0.40 -1.47 16 29 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 30 C -0.09 -1.10 9.67 -39.58 -0.38 -1.48 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 33 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 34 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.15 8.01 -51.92 -0.42 0.74 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.22 7.02 -51.93 -0.36 0.85 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.13 1.79 7.40 -52.49 -0.39 1.40 16 43 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 1.33 7.95 -52.49 -0.42 0.91 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -29.62 365.68 -10.22 -39.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.68 Total: 2.87 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.76 Total: -3.91 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.38 Total: -48.61 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.62 -10.22 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049756862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.633 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds