Wall clock time and date at job start Sat Apr 11 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47220 * 239.99880 * 3 2 1 5 5 H 1.48497 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47341 * 119.99637 * 3 2 1 7 7 C 1.38814 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.48383 * 126.56240 * 359.95448 * 9 7 2 11 11 C 1.55466 * 106.97539 * 185.56526 * 10 9 7 12 12 C 1.53338 * 101.58466 * 22.37983 * 11 10 9 13 13 H 1.09001 * 111.34640 * 78.23102 * 12 11 10 14 14 C 1.45021 * 126.56235 * 179.97438 * 9 7 2 15 15 H 1.08993 * 108.70821 * 263.45788 * 14 9 7 16 16 C 1.51082 * 119.19721 * 28.73858 * 14 9 7 17 17 C 1.53868 * 107.34804 * 183.88583 * 16 14 9 18 18 C 1.52713 * 111.52370 * 303.07127 * 17 16 14 19 19 N 1.45726 * 116.43483 * 206.93140 * 12 11 10 20 20 C 1.34777 * 122.22396 * 350.63543 * 19 12 11 21 21 O 1.21283 * 120.00178 * 4.40036 * 20 19 12 22 22 C 1.50708 * 119.99929 * 184.40222 * 20 19 12 23 23 H 1.09001 * 109.46917 * 344.17555 * 22 20 19 24 24 F 1.39895 * 109.47301 * 104.17930 * 22 20 19 25 25 C 1.50700 * 109.46717 * 224.18164 * 22 20 19 26 26 C 1.38231 * 120.00234 * 294.71887 * 25 22 20 27 27 C 1.38236 * 120.00132 * 179.76992 * 26 25 22 28 28 C 1.38239 * 119.99882 * 0.51103 * 27 26 25 29 29 C 1.38231 * 119.99807 * 359.74619 * 28 27 26 30 30 C 1.38235 * 120.00262 * 359.97438 * 29 28 27 31 31 H 0.96996 * 120.00341 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.96104 * 304.94051 * 10 9 7 33 33 H 1.08996 * 109.96329 * 66.17723 * 10 9 7 34 34 H 1.09004 * 110.99105 * 140.69746 * 11 10 9 35 35 H 1.09008 * 110.98366 * 264.46109 * 11 10 9 36 36 H 1.09003 * 109.88195 * 64.42696 * 16 14 9 37 37 H 1.08997 * 109.88452 * 303.35047 * 16 14 9 38 38 H 1.09002 * 109.07153 * 182.54443 * 17 16 14 39 39 H 1.09000 * 109.06638 * 63.59277 * 17 16 14 40 40 H 1.08998 * 109.16223 * 288.12975 * 18 17 16 41 41 H 1.09003 * 109.16295 * 168.94083 * 18 17 16 42 42 H 1.07998 * 119.99852 * 0.02562 * 26 25 22 43 43 H 1.07998 * 120.00271 * 180.23686 * 27 26 25 44 44 H 1.08001 * 119.99832 * 179.72471 * 28 27 26 45 45 H 1.08002 * 119.99903 * 179.97438 * 29 28 27 46 46 H 1.07997 * 120.00227 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1485 -2.5577 0.0010 11 6 -0.4302 -4.0798 0.1450 12 6 0.8737 -4.5754 0.7816 13 1 0.9035 -4.3541 1.8485 14 6 1.9025 -3.7186 0.0005 15 1 1.9336 -4.0861 -1.0251 16 6 3.2566 -3.9348 0.6347 17 6 3.6455 -5.4043 0.3963 18 6 2.5927 -6.3600 0.9536 19 7 1.2346 -5.9636 0.5243 20 6 0.3889 -6.8274 -0.0717 21 8 -0.6830 -6.4388 -0.4852 22 6 0.7752 -8.2761 -0.2242 23 1 1.8476 -8.3852 -0.0622 24 9 0.0809 -9.0453 0.7157 25 6 0.4268 -8.7453 -1.6132 26 6 -0.8956 -8.8046 -2.0114 27 6 -1.2149 -9.2304 -3.2872 28 6 -0.2123 -9.6070 -4.1613 29 6 1.1097 -9.5527 -3.7614 30 6 1.4294 -9.1213 -2.4875 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5850 -2.0174 0.8410 33 1 -0.5658 -2.1889 -0.9360 34 1 -1.2824 -4.2588 0.8007 35 1 -0.5866 -4.5418 -0.8299 36 1 3.2010 -3.7350 1.7048 37 1 3.9921 -3.2769 0.1717 38 1 4.6004 -5.6035 0.8827 39 1 3.7503 -5.5756 -0.6751 40 1 2.6405 -6.3493 2.0425 41 1 2.8008 -7.3688 0.5971 42 1 -1.6791 -8.5144 -1.3271 43 1 -2.2478 -9.2732 -3.5996 44 1 -0.4621 -9.9439 -5.1566 45 1 1.8930 -9.8472 -4.4442 46 1 2.4623 -9.0793 -2.1749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049756866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:57 Heat of formation + Delta-G solvation = -8.742414 kcal Electronic energy + Delta-G solvation = -29596.952897 eV Core-core repulsion = 25595.230242 eV Total energy + Delta-G solvation = -4001.722655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.03701 -40.45586 -39.22737 -37.71620 -35.55218 -32.76070 -32.69783 -32.02181 -31.04234 -29.19527 -28.38150 -27.28647 -24.60497 -24.36538 -22.80118 -22.10295 -21.58917 -20.76126 -19.77869 -19.09082 -17.46715 -17.18087 -16.62597 -16.49452 -16.02228 -15.38006 -14.98573 -14.74151 -14.69608 -14.49240 -14.39408 -14.08562 -13.89626 -13.54285 -13.40029 -13.03655 -12.80496 -12.69938 -12.49391 -12.28375 -12.19558 -11.83006 -11.60051 -11.32281 -11.23161 -10.97742 -10.85396 -10.73233 -10.53104 -10.44906 -10.13312 -10.04461 -9.88235 -9.62611 -9.25051 -9.02953 -8.86271 -8.57588 -8.34254 -6.84048 -5.70334 -3.04992 1.05530 1.27582 2.52569 2.88331 3.40256 3.44458 3.46169 3.61388 4.11494 4.16480 4.25514 4.49048 4.75839 4.80263 4.85116 4.95728 4.98922 5.12547 5.21120 5.31797 5.33164 5.39264 5.48060 5.51508 5.59660 5.71480 5.73125 5.83039 5.90183 5.94252 6.02714 6.19389 6.24275 6.24728 6.33970 6.36374 6.37667 6.51090 6.68018 6.71738 6.80543 6.86738 7.13578 7.49955 7.58141 7.65835 7.83085 8.17552 8.24624 9.18621 9.82531 10.50573 11.41585 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.003301 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.783127 B = 8481.366792 C = 8835.567477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.134 4.134 12 C 0.114 3.886 13 H 0.082 0.918 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.104 3.896 19 N -0.591 5.591 20 C 0.500 3.500 21 O -0.505 6.505 22 C 0.120 3.880 23 H 0.108 0.892 24 F -0.185 7.185 25 C -0.125 4.125 26 C -0.067 4.067 27 C -0.125 4.125 28 C -0.108 4.108 29 C -0.128 4.128 30 C -0.097 4.097 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -20.935 -2.175 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.172 4.172 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.324 5.324 20 C 0.284 3.716 21 O -0.380 6.380 22 C 0.081 3.919 23 H 0.125 0.875 24 F -0.165 7.165 25 C -0.126 4.126 26 C -0.085 4.085 27 C -0.143 4.143 28 C -0.126 4.126 29 C -0.146 4.146 30 C -0.115 4.115 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.019 -20.484 -2.378 21.009 hybrid contribution 0.542 0.893 0.110 1.050 sum 4.561 -19.590 -2.268 20.242 Atomic orbital electron populations 1.69933 1.04897 1.25219 1.56583 1.24805 0.95662 0.97626 1.02157 0.86226 0.78478 0.83350 0.77843 1.21209 1.21599 1.21173 1.18936 0.90296 0.82201 1.44247 0.90396 1.44066 1.01779 0.99264 1.86522 1.21738 0.83611 0.88678 1.01141 1.23020 0.94399 0.98107 1.01687 1.22408 0.99059 0.77958 0.99517 0.90004 1.20650 0.91350 0.87260 0.95708 0.96590 1.21432 0.98568 0.94062 1.01394 1.21908 0.97546 0.95749 1.01624 1.21886 0.81584 0.98272 1.00110 1.48036 1.14298 1.11554 1.58477 1.20516 0.85110 0.87137 0.78841 1.90718 1.22860 1.77448 1.46984 1.20479 0.97447 0.88363 0.85617 0.87460 1.92897 1.81742 1.75837 1.66060 1.19750 0.94921 1.03363 0.94563 1.21120 0.95932 0.95030 0.96374 1.21193 0.99674 0.99704 0.93751 1.21249 0.93056 0.98776 0.99506 1.21070 0.96643 1.00886 0.95988 1.20963 0.98521 0.98161 0.93868 0.93642 0.92523 0.94222 0.92083 0.89603 0.91637 0.91284 0.90602 0.91688 0.90893 0.90389 0.84970 0.85667 0.85907 0.85716 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.46 55.49 0.58 -26.59 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.03 7.31 -52.48 -0.38 1.65 16 9 N -0.59 -15.07 3.35 -163.60 -0.55 -15.62 16 10 C 0.17 4.36 5.47 -1.69 -0.01 4.35 16 11 C -0.13 -2.84 5.11 -25.25 -0.13 -2.97 16 12 C 0.11 2.15 3.28 -67.12 -0.22 1.93 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.28 2.58 -68.63 -0.18 3.10 16 15 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 16 C -0.12 -1.91 5.45 -27.24 -0.15 -2.06 16 17 C -0.13 -1.52 5.92 -26.43 -0.16 -1.67 16 18 C 0.10 1.15 6.30 -3.45 -0.02 1.13 16 19 N -0.59 -9.05 2.92 -164.35 -0.48 -9.53 16 20 C 0.50 7.92 7.05 -10.98 -0.08 7.84 16 21 O -0.51 -9.61 11.94 5.55 0.07 -9.55 16 22 C 0.12 1.49 3.73 -29.03 -0.11 1.38 16 23 H 0.11 0.98 5.12 -51.93 -0.27 0.71 16 24 F -0.18 -2.51 16.91 2.25 0.04 -2.47 16 25 C -0.13 -1.57 5.00 -104.62 -0.52 -2.09 16 26 C -0.07 -0.87 8.55 -39.58 -0.34 -1.21 16 27 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 29 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 30 C -0.10 -1.00 9.67 -39.58 -0.38 -1.39 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 33 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.92 6.06 -51.92 -0.31 1.60 16 36 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 37 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.63 5.31 -51.93 -0.28 0.35 16 42 H 0.13 1.85 7.43 -52.49 -0.39 1.46 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.96 7.95 -52.49 -0.42 0.54 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -32.65 361.38 -10.23 -42.88 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.58 Total: 1.63 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.73 Total: -3.17 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.45 Total: -51.73 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.65 -10.23 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049756866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.139 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds