Wall clock time and date at job start Sat Apr 11 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48500 * 109.47215 * 274.99269 * 3 2 1 5 5 H 1.48503 * 109.47031 * 34.99686 * 3 2 1 6 6 H 1.48501 * 109.47126 * 154.99395 * 3 2 1 7 7 C 1.38809 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00214 * 185.66162 * 7 2 1 9 9 N 1.36933 * 120.00042 * 5.66453 * 7 2 1 10 10 C 1.48384 * 126.56276 * 353.01490 * 9 7 2 11 11 C 1.55469 * 106.97849 * 185.48569 * 10 9 7 12 12 C 1.53438 * 101.67233 * 22.59607 * 11 10 9 13 13 H 1.08995 * 111.14817 * 78.81863 * 12 11 10 14 14 C 1.45032 * 126.56135 * 172.97026 * 9 7 2 15 15 H 1.08997 * 108.70023 * 264.13962 * 14 9 7 16 16 C 1.51079 * 119.19260 * 28.81984 * 14 9 7 17 17 C 1.53747 * 107.31594 * 183.89526 * 16 14 9 18 18 C 1.52717 * 111.58617 * 303.05158 * 17 16 14 19 19 N 1.45728 * 116.37119 * 207.28648 * 12 11 10 20 20 C 1.34781 * 122.22609 * 350.12165 * 19 12 11 21 21 O 1.21277 * 119.99872 * 359.97438 * 20 19 12 22 22 C 1.50696 * 119.99973 * 179.97438 * 20 19 12 23 23 C 1.50695 * 109.47440 * 179.97438 * 22 20 19 24 24 C 1.38218 * 120.01217 * 99.99878 * 23 22 20 25 25 C 1.38224 * 120.02710 * 179.97438 * 24 23 22 26 26 C 1.38269 * 120.05050 * 0.02562 * 25 24 23 27 27 C 1.38181 * 120.02519 * 359.97438 * 26 25 24 28 28 C 1.38434 * 120.01478 * 279.72687 * 23 22 20 29 29 F 1.35107 * 120.02543 * 359.97438 * 28 23 22 30 30 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.96356 * 66.10249 * 10 9 7 32 32 H 1.09001 * 109.95825 * 304.86147 * 10 9 7 33 33 H 1.08998 * 110.98415 * 264.50249 * 11 10 9 34 34 H 1.08999 * 110.98867 * 140.69165 * 11 10 9 35 35 H 1.09002 * 109.88197 * 303.36040 * 16 14 9 36 36 H 1.08999 * 109.88066 * 64.36588 * 16 14 9 37 37 H 1.08997 * 109.00484 * 182.53101 * 17 16 14 38 38 H 1.09001 * 109.07009 * 63.61807 * 17 16 14 39 39 H 1.08996 * 109.16199 * 288.15893 * 18 17 16 40 40 H 1.09001 * 109.15752 * 168.91975 * 18 17 16 41 41 H 1.09007 * 109.47368 * 300.00426 * 22 20 19 42 42 H 1.09005 * 109.47096 * 59.99625 * 22 20 19 43 43 H 1.08003 * 119.98765 * 0.02562 * 24 23 22 44 44 H 1.08002 * 119.97408 * 180.02562 * 25 24 23 45 45 H 1.07993 * 119.98800 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.01306 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4122 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0864 -1.2044 0.0917 9 7 1.3307 -2.3851 -0.1181 10 6 -0.1423 -2.5630 -0.1079 11 6 -0.4149 -4.0934 -0.1293 12 6 0.9015 -4.6510 0.4279 13 1 0.9400 -4.5578 1.5131 14 6 1.9130 -3.7038 -0.2774 15 1 1.9354 -3.9501 -1.3389 16 6 3.2802 -3.9806 0.3029 17 6 3.6696 -5.4108 -0.1054 18 6 2.6328 -6.4303 0.3614 19 7 1.2650 -5.9972 0.0044 20 6 0.4112 -6.7942 -0.6683 21 8 -0.7021 -6.3975 -0.9402 22 6 0.8401 -8.1782 -1.0825 23 6 -0.2897 -8.8566 -1.8134 24 6 -0.2881 -8.9069 -3.1947 25 6 -1.3240 -9.5296 -3.8653 26 6 -2.3633 -10.1022 -3.1555 27 6 -2.3671 -10.0531 -1.7746 28 6 -1.3269 -9.4345 -1.1015 29 9 -1.3265 -9.3912 0.2489 30 1 -0.4850 0.8400 0.0004 31 1 -0.5799 -2.0948 -0.9896 32 1 -0.5641 -2.1226 0.7956 33 1 -0.5883 -4.4449 -1.1464 34 1 -1.2529 -4.3499 0.5189 35 1 4.0036 -3.2704 -0.0977 36 1 3.2449 -3.9004 1.3894 37 1 4.6348 -5.6561 0.3377 38 1 3.7544 -5.4607 -1.1909 39 1 2.7020 -6.5411 1.4435 40 1 2.8383 -7.3912 -0.1103 41 1 1.7079 -8.1086 -1.7386 42 1 1.0998 -8.7584 -0.1970 43 1 0.5233 -8.4603 -3.7501 44 1 -1.3217 -9.5688 -4.9446 45 1 -3.1723 -10.5880 -3.6806 46 1 -3.1791 -10.5001 -1.2204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049869272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:11 Heat of formation + Delta-G solvation = -17.009662 kcal Electronic energy + Delta-G solvation = -29323.605879 eV Core-core repulsion = 25321.524729 eV Total energy + Delta-G solvation = -4002.081149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.93422 -40.41446 -39.13091 -37.62308 -35.40921 -33.17303 -32.59478 -32.04714 -30.66843 -29.15928 -28.28863 -27.55464 -24.50080 -24.34192 -22.93669 -22.12398 -21.48880 -20.66991 -19.67495 -18.77356 -17.65262 -16.88120 -16.60436 -16.18773 -16.11309 -15.46273 -15.43399 -15.13393 -14.71820 -14.33523 -14.18409 -14.08339 -13.65219 -13.61888 -13.29905 -13.21446 -12.99190 -12.44868 -12.39702 -12.22679 -12.14260 -11.80566 -11.64901 -11.56062 -11.21761 -11.06932 -10.84132 -10.69770 -10.51832 -10.43673 -10.07429 -9.97266 -9.81189 -9.57832 -9.23306 -8.93881 -8.72875 -8.53799 -8.19483 -6.79048 -5.69136 -3.02645 1.00938 1.07470 2.85274 3.13314 3.41493 3.46038 3.48600 3.51028 4.17015 4.37754 4.51173 4.55238 4.64665 4.77352 4.86758 4.98347 5.08473 5.14517 5.25624 5.28802 5.32598 5.39323 5.47032 5.57455 5.64226 5.73493 5.78606 5.88845 5.89698 5.98710 6.01621 6.10970 6.15239 6.23560 6.27860 6.31148 6.40947 6.58798 6.73659 6.74374 6.82081 6.92863 7.21667 7.61018 7.68071 7.74869 7.86383 8.27310 8.45964 9.21291 9.85433 10.54655 11.43646 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.003064 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.793675 B = 9135.064169 C = 9710.122568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.078 0.922 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.601 5.601 20 C 0.518 3.482 21 O -0.523 6.523 22 C -0.103 4.103 23 C -0.096 4.096 24 C -0.080 4.080 25 C -0.131 4.131 26 C -0.094 4.094 27 C -0.155 4.155 28 C 0.116 3.884 29 F -0.137 7.137 30 H 0.252 0.748 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -22.844 -3.765 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.013 3.987 13 H 0.096 0.904 14 C 0.051 3.949 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.334 5.334 20 C 0.305 3.695 21 O -0.399 6.399 22 C -0.143 4.143 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.174 4.174 28 C 0.097 3.903 29 F -0.116 7.116 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.838 -22.384 -3.847 22.786 hybrid contribution 0.526 0.969 0.330 1.151 sum 2.365 -21.415 -3.517 21.830 Atomic orbital electron populations 1.69964 1.04920 1.25063 1.56492 1.24829 0.95652 0.97625 1.02172 0.86149 0.78637 0.83792 0.77474 1.21663 1.21792 1.20667 1.18987 0.90766 0.82310 1.43540 0.90376 1.44083 1.01784 1.00285 1.85572 1.21727 0.83695 0.88634 1.01100 1.22957 0.94452 0.97382 1.01969 1.22402 0.98722 0.79463 0.98132 0.90392 1.20727 0.91340 0.86856 0.96013 0.96559 1.21418 0.98561 0.94540 1.01002 1.21875 0.97730 0.95578 1.01597 1.21716 0.81506 0.97631 1.00430 1.48002 1.13482 1.15804 1.56131 1.20220 0.85038 0.86131 0.78078 1.90726 1.20326 1.74284 1.54566 1.20665 0.97545 0.94370 1.01730 1.19371 0.96071 1.00021 0.94258 1.20922 0.98946 0.97604 0.92387 1.21155 0.94429 0.99012 1.00291 1.20984 0.98419 0.98765 0.93026 1.21105 0.98459 1.02456 0.95371 1.17501 0.96022 0.99925 0.76883 1.91494 1.96392 1.94610 1.29068 0.93730 0.93853 0.93265 0.89996 0.92209 0.91449 0.91837 0.90916 0.91819 0.91484 0.90427 0.87701 0.88013 0.85123 0.85363 0.85192 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.47 10.51 55.49 0.58 -26.88 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.33 9.95 -15.06 -0.15 -6.48 16 8 H 0.08 2.07 7.28 -52.48 -0.38 1.69 16 9 N -0.59 -15.34 3.35 -163.28 -0.55 -15.88 16 10 C 0.17 4.45 5.45 -1.69 -0.01 4.44 16 11 C -0.13 -2.82 5.01 -25.19 -0.13 -2.95 16 12 C 0.12 2.26 3.33 -66.79 -0.22 2.04 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.16 3.35 2.58 -68.36 -0.18 3.17 16 15 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 16 C -0.12 -1.97 5.42 -27.31 -0.15 -2.12 16 17 C -0.13 -1.57 5.91 -26.49 -0.16 -1.72 16 18 C 0.11 1.25 6.32 -3.45 -0.02 1.23 16 19 N -0.60 -9.35 2.91 -163.99 -0.48 -9.83 16 20 C 0.52 8.21 7.68 -10.99 -0.08 8.13 16 21 O -0.52 -10.32 12.79 5.56 0.07 -10.25 16 22 C -0.10 -1.16 3.98 -29.04 -0.12 -1.28 16 23 C -0.10 -1.16 4.42 -104.56 -0.46 -1.62 16 24 C -0.08 -0.84 9.67 -39.59 -0.38 -1.22 16 25 C -0.13 -1.20 10.04 -39.57 -0.40 -1.59 16 26 C -0.09 -0.85 10.04 -39.59 -0.40 -1.25 16 27 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 28 C 0.12 1.49 7.14 -39.42 -0.28 1.21 16 29 F -0.14 -1.93 16.66 2.25 0.04 -1.90 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.04 1.23 7.62 -51.93 -0.40 0.83 16 32 H 0.05 1.37 7.44 -51.93 -0.39 0.99 16 33 H 0.08 1.88 6.21 -51.93 -0.32 1.56 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 36 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.64 6.18 -51.93 -0.32 0.32 16 41 H 0.10 0.90 7.62 -51.92 -0.40 0.50 16 42 H 0.10 0.98 7.81 -51.93 -0.41 0.58 16 43 H 0.13 1.12 8.04 -52.48 -0.42 0.69 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -33.83 364.83 -10.27 -44.10 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.79 Total: 0.29 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.62 Total: -2.34 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.44 Total: -52.60 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.83 -10.27 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049869272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.088 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds