Wall clock time and date at job start Sat Apr 11 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47147 * 299.99929 * 3 2 1 6 6 H 1.48494 * 109.47332 * 60.00008 * 3 2 1 7 7 C 1.38812 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00097 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.48426 * 126.45998 * 0.82791 * 9 7 2 11 11 C 1.54568 * 107.44551 * 178.02721 * 10 9 7 12 12 C 1.54420 * 102.44920 * 337.51137 * 11 10 9 13 13 H 1.08999 * 110.71527 * 279.44108 * 12 11 10 14 14 C 1.48208 * 125.76675 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52570 * 326.12518 * 14 9 7 16 16 C 1.53008 * 107.12144 * 88.23845 * 14 9 7 17 17 C 1.52733 * 110.80241 * 168.08226 * 16 14 9 18 18 C 1.53466 * 108.43632 * 296.22698 * 17 16 14 19 19 N 1.43585 * 110.88612 * 157.25548 * 12 11 10 20 20 C 1.34782 * 119.25676 * 110.63188 * 19 12 11 21 21 O 1.21276 * 119.99892 * 359.22410 * 20 19 12 22 22 C 1.50700 * 119.99864 * 179.22396 * 20 19 12 23 23 C 1.50697 * 109.46900 * 179.97438 * 22 20 19 24 24 C 1.38267 * 119.98885 * 269.72446 * 23 22 20 25 25 C 1.38232 * 120.05005 * 179.72631 * 24 23 22 26 26 C 1.38218 * 120.02253 * 0.55244 * 25 24 23 27 27 C 1.38439 * 119.97901 * 359.72813 * 26 25 24 28 28 F 1.35097 * 120.02718 * 180.02562 * 27 26 25 29 29 C 1.38181 * 119.98684 * 90.00648 * 23 22 20 30 30 H 0.96996 * 120.00517 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.46526 * 58.16913 * 10 9 7 32 32 H 1.09001 * 109.24630 * 297.19393 * 10 9 7 33 33 H 1.09003 * 110.81193 * 219.27564 * 11 10 9 34 34 H 1.08998 * 110.98204 * 95.82946 * 11 10 9 35 35 H 1.09004 * 109.21342 * 288.42503 * 16 14 9 36 36 H 1.09004 * 109.21211 * 47.73922 * 16 14 9 37 37 H 1.09002 * 109.64139 * 55.90768 * 17 16 14 38 38 H 1.09001 * 109.64525 * 176.32738 * 17 16 14 39 39 H 1.09002 * 109.83482 * 177.60143 * 18 17 16 40 40 H 1.09007 * 109.83012 * 298.48213 * 18 17 16 41 41 H 1.08998 * 109.47261 * 299.99899 * 22 20 19 42 42 H 1.09006 * 109.46921 * 60.00119 * 22 20 19 43 43 H 1.08003 * 119.97430 * 359.97438 * 24 23 22 44 44 H 1.07996 * 119.98553 * 180.27379 * 25 24 23 45 45 H 1.08005 * 120.01006 * 179.74534 * 26 25 24 46 46 H 1.07998 * 120.00966 * 0.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1491 -2.5552 -0.0172 11 6 -0.4431 -4.0720 -0.0605 12 6 0.8665 -4.6485 -0.6411 13 1 0.8881 -4.5401 -1.7255 14 6 1.9340 -3.7396 0.0005 15 1 2.8658 -3.7587 -0.5646 16 6 2.1599 -4.1319 1.4621 17 6 2.5077 -5.6145 1.5783 18 6 1.3040 -6.4347 1.0949 19 7 1.0185 -6.0316 -0.2866 20 6 0.9124 -6.9729 -1.2454 21 8 0.6770 -6.6486 -2.3901 22 6 1.0863 -8.4282 -0.8951 23 6 0.9198 -9.2669 -2.1360 24 6 -0.3300 -9.7444 -2.4849 25 6 -0.4851 -10.5091 -3.6260 26 6 0.6113 -10.8068 -4.4132 27 6 1.8641 -10.3342 -4.0618 28 9 2.9363 -10.6241 -4.8308 29 6 2.0173 -9.5634 -2.9215 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5772 -2.0694 -0.8941 32 1 -0.5708 -2.1215 0.8895 33 1 -1.2853 -4.2847 -0.7191 34 1 -0.6279 -4.4625 0.9402 35 1 2.9780 -3.5385 1.8705 36 1 1.2526 -3.9306 2.0319 37 1 3.3757 -5.8370 0.9575 38 1 2.7282 -5.8589 2.6174 39 1 1.5434 -7.4976 1.1282 40 1 0.4397 -6.2306 1.7270 41 1 2.0820 -8.5857 -0.4805 42 1 0.3362 -8.7168 -0.1586 43 1 -1.1864 -9.5164 -1.8676 44 1 -1.4625 -10.8778 -3.8999 45 1 0.4906 -11.4078 -5.3025 46 1 2.9942 -9.1945 -2.6461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:19 Heat of formation + Delta-G solvation = -24.656241 kcal Electronic energy + Delta-G solvation = -28764.382717 eV Core-core repulsion = 24761.969988 eV Total energy + Delta-G solvation = -4002.412730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.03145 -40.62502 -39.25768 -37.78546 -35.25442 -33.15285 -32.47922 -32.12245 -30.73850 -29.22713 -28.50959 -27.59043 -24.59290 -24.30844 -22.95520 -22.33926 -21.93695 -20.27517 -19.91253 -18.12939 -17.45851 -17.23792 -16.88017 -16.62228 -16.35190 -15.74200 -15.50213 -15.15653 -14.76473 -14.37752 -14.21955 -13.97994 -13.78161 -13.60004 -13.49453 -13.14974 -12.97514 -12.57727 -12.32690 -12.19792 -12.03399 -11.95397 -11.78064 -11.39021 -11.26295 -11.03419 -11.00412 -10.80437 -10.66898 -10.52045 -10.11397 -10.06064 -9.67575 -9.62575 -9.58611 -9.11894 -8.83052 -8.65199 -8.28382 -6.86544 -5.72362 -3.05678 0.95398 1.02691 2.70522 3.08467 3.39631 3.44973 3.47425 3.48764 4.02762 4.36596 4.47731 4.52666 4.59006 4.79708 4.90447 4.97610 5.03661 5.10401 5.16429 5.25839 5.26608 5.35956 5.46741 5.53455 5.60110 5.63061 5.70272 5.84586 5.85513 5.90908 5.96675 6.08349 6.08605 6.21018 6.25987 6.29398 6.33381 6.50057 6.57178 6.69936 6.72979 6.97707 7.06005 7.52764 7.55573 7.60500 7.80031 8.19765 8.32646 9.17673 9.78710 10.46147 11.40063 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002664 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.971769 B =10508.108283 C =10737.653446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.178 3.822 11 C -0.151 4.151 12 C 0.129 3.871 13 H 0.101 0.899 14 C 0.156 3.844 15 H 0.056 0.944 16 C -0.129 4.129 17 C -0.134 4.134 18 C 0.105 3.895 19 N -0.589 5.589 20 C 0.509 3.491 21 O -0.532 6.532 22 C -0.104 4.104 23 C -0.033 4.033 24 C -0.115 4.115 25 C -0.090 4.090 26 C -0.157 4.157 27 C 0.098 3.902 28 F -0.142 7.142 29 C -0.139 4.139 30 H 0.252 0.748 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -23.235 0.655 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.119 0.881 14 C 0.047 3.953 15 H 0.074 0.926 16 C -0.169 4.169 17 C -0.173 4.173 18 C -0.018 4.018 19 N -0.321 5.321 20 C 0.297 3.703 21 O -0.409 6.409 22 C -0.144 4.144 23 C -0.034 4.034 24 C -0.133 4.133 25 C -0.108 4.108 26 C -0.176 4.176 27 C 0.079 3.921 28 F -0.120 7.120 29 C -0.158 4.158 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.214 -22.771 0.018 22.772 hybrid contribution 0.629 0.984 -0.025 1.168 sum 0.842 -21.787 -0.007 21.803 Atomic orbital electron populations 1.69950 1.04870 1.24961 1.57039 1.24790 0.95704 0.97594 1.02320 0.86056 0.78712 0.83844 0.77214 1.20533 1.21778 1.21802 1.19062 0.90359 0.82119 1.43663 0.90368 1.45004 1.01321 0.99169 1.86788 1.21371 0.84245 0.87812 1.01195 1.23105 0.96513 0.99650 0.99739 1.21453 0.96475 0.78612 1.01057 0.88123 1.21303 0.94448 0.86366 0.93202 0.92606 1.22109 1.01933 0.93038 0.99866 1.21934 0.97272 0.97268 1.00818 1.21858 0.98582 0.98826 0.82524 1.47215 1.69996 1.06673 1.08209 1.20422 0.77308 0.87288 0.85319 1.90732 1.47907 1.82399 1.19827 1.20763 1.05150 0.91890 0.96579 1.19148 0.92922 0.95815 0.95479 1.21071 0.96711 0.97973 0.97591 1.20957 0.98309 0.97436 0.94065 1.21125 0.91480 1.03134 1.01850 1.17635 0.83707 0.99627 0.91148 1.91495 1.54394 1.91898 1.74249 1.20966 1.00278 0.99845 0.94714 0.93793 0.93297 0.93805 0.92129 0.92265 0.92162 0.91826 0.91847 0.91253 0.90088 0.91071 0.87673 0.87567 0.85401 0.84983 0.84921 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.44 55.49 0.58 -26.33 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -6.13 10.30 -15.06 -0.16 -6.29 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.85 2.96 -161.15 -0.48 -15.33 16 10 C 0.18 4.28 5.29 -2.16 -0.01 4.26 16 11 C -0.15 -2.84 6.06 -25.16 -0.15 -3.00 16 12 C 0.13 2.36 3.05 -68.11 -0.21 2.15 16 13 H 0.10 2.13 6.89 -51.93 -0.36 1.78 16 14 C 0.16 3.11 3.55 -66.36 -0.24 2.87 16 15 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.13 -2.17 5.11 -26.86 -0.14 -2.31 16 17 C -0.13 -1.59 6.11 -26.63 -0.16 -1.76 16 18 C 0.10 1.12 6.05 -3.68 -0.02 1.09 16 19 N -0.59 -8.39 2.67 -166.16 -0.44 -8.83 16 20 C 0.51 7.23 7.64 -10.98 -0.08 7.14 16 21 O -0.53 -9.91 15.31 5.56 0.09 -9.82 16 22 C -0.10 -0.97 4.14 -29.04 -0.12 -1.09 16 23 C -0.03 -0.35 4.37 -104.63 -0.46 -0.81 16 24 C -0.12 -1.13 9.70 -39.57 -0.38 -1.51 16 25 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 26 C -0.16 -1.54 10.03 -39.51 -0.40 -1.93 16 27 C 0.10 1.12 7.30 -39.42 -0.29 0.84 16 28 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 29 C -0.14 -1.57 9.68 -39.51 -0.38 -1.95 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 32 H 0.04 1.15 7.58 -51.93 -0.39 0.75 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.02 6.87 -51.93 -0.36 0.66 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.14 7.25 -51.93 -0.38 0.77 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.58 5.81 -51.93 -0.30 0.28 16 40 H 0.07 0.74 7.54 -51.93 -0.39 0.35 16 41 H 0.11 0.76 7.55 -51.93 -0.39 0.36 16 42 H 0.11 0.72 7.87 -51.93 -0.41 0.31 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -32.79 367.31 -10.11 -42.90 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.72 Total: 0.30 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -3.69 Total: -3.80 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.34 Total: -50.49 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.79 -10.11 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.248 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds