Wall clock time and date at job start Sat Apr 11 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99242 * 2 1 4 4 H 1.48503 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47322 * 299.99903 * 3 2 1 6 6 H 1.48503 * 109.47312 * 60.00002 * 3 2 1 7 7 C 1.38807 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.47120 * 125.76809 * 0.02942 * 9 7 2 11 11 C 1.54562 * 107.25621 * 182.57845 * 10 9 7 12 12 C 1.54421 * 102.44933 * 21.66445 * 11 10 9 13 13 H 1.08995 * 110.71852 * 80.56489 * 12 11 10 14 14 C 1.48210 * 125.76671 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.52905 * 33.87935 * 14 9 7 16 16 C 1.53466 * 107.08545 * 271.00004 * 14 9 7 17 17 C 1.52733 * 110.58445 * 192.07162 * 16 14 9 18 18 C 1.53460 * 108.61660 * 63.62275 * 17 16 14 19 19 N 1.45115 * 111.60801 * 203.42690 * 12 11 10 20 20 C 1.34777 * 119.57561 * 248.65133 * 19 12 11 21 21 O 1.21276 * 119.99803 * 359.97438 * 20 19 12 22 22 C 1.50704 * 120.00065 * 179.97438 * 20 19 12 23 23 C 1.50703 * 109.47207 * 180.02562 * 22 20 19 24 24 C 1.38238 * 119.97106 * 269.73223 * 23 22 20 25 25 C 1.38201 * 120.02245 * 179.73021 * 24 23 22 26 26 C 1.38462 * 119.97588 * 0.55802 * 25 24 23 27 27 F 1.35097 * 120.02801 * 179.68862 * 26 25 24 28 28 C 1.38465 * 119.94177 * 359.71249 * 26 25 24 29 29 C 1.38196 * 119.97947 * 359.97438 * 28 26 25 30 30 H 0.96991 * 120.00793 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.88260 * 301.98915 * 10 9 7 32 32 H 1.09000 * 109.88623 * 63.00216 * 10 9 7 33 33 H 1.09000 * 110.80699 * 263.42647 * 11 10 9 34 34 H 1.09002 * 110.81203 * 139.90392 * 11 10 9 35 35 H 1.09003 * 109.51957 * 71.66665 * 16 14 9 36 36 H 1.08993 * 109.11628 * 312.22029 * 16 14 9 37 37 H 1.09002 * 109.64400 * 303.83068 * 17 16 14 38 38 H 1.09002 * 109.63936 * 183.41412 * 17 16 14 39 39 H 1.09003 * 109.83625 * 61.34298 * 18 17 16 40 40 H 1.09004 * 109.83518 * 182.22746 * 18 17 16 41 41 H 1.08998 * 109.46840 * 300.00059 * 22 20 19 42 42 H 1.08997 * 109.47126 * 60.00262 * 22 20 19 43 43 H 1.08003 * 119.99162 * 359.96671 * 24 23 22 44 44 H 1.08006 * 120.01211 * 180.29445 * 25 24 23 45 45 H 1.08002 * 120.00598 * 180.02562 * 28 26 25 46 46 H 1.07997 * 119.98723 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3258 -2.3880 0.0016 10 6 -0.1379 -2.5360 0.0017 11 6 -0.4457 -4.0492 0.0694 12 6 0.8587 -4.6282 0.6592 13 1 0.8816 -4.5025 1.7416 14 6 1.9343 -3.7395 0.0017 15 1 2.8665 -3.7584 0.5662 16 6 2.1416 -4.1407 -1.4650 17 6 2.4840 -5.6253 -1.5723 18 6 1.2877 -6.4419 -1.0653 19 7 1.0231 -6.0293 0.3192 20 6 0.9309 -6.9637 1.2861 21 8 0.7123 -6.6312 2.4317 22 6 1.0994 -8.4216 0.9436 23 6 0.9510 -9.2515 2.1928 24 6 2.0613 -9.5471 2.9615 25 6 1.9255 -10.3034 4.1102 26 6 0.6787 -10.7747 4.4849 27 9 0.5458 -11.5194 5.6042 28 6 -0.4318 -10.4826 3.7110 29 6 -0.2946 -9.7207 2.5662 30 1 -0.4851 0.8399 -0.0004 31 1 -0.5614 -2.0322 0.8706 32 1 -0.5536 -2.1112 -0.9121 33 1 -0.6325 -4.4513 -0.9263 34 1 -1.2897 -4.2434 0.7314 35 1 2.9546 -3.5533 -1.8918 36 1 1.2260 -3.9426 -2.0221 37 1 3.3613 -5.8440 -0.9634 38 1 2.6872 -5.8802 -2.6124 39 1 0.4135 -6.2408 -1.6846 40 1 1.5259 -7.5051 -1.0962 41 1 0.3387 -8.7152 0.2203 42 1 2.0890 -8.5823 0.5158 43 1 3.0346 -9.1837 2.6663 44 1 2.7924 -10.5302 4.7132 45 1 -1.4049 -10.8494 4.0025 46 1 -1.1607 -9.4925 1.9627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:36 Heat of formation + Delta-G solvation = -25.215331 kcal Electronic energy + Delta-G solvation = -28661.589217 eV Core-core repulsion = 24659.152243 eV Total energy + Delta-G solvation = -4002.436974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.05244 -40.53985 -39.24704 -37.79224 -35.28925 -32.92031 -32.41061 -32.05499 -31.33299 -29.15897 -28.41183 -27.31121 -24.55675 -24.30281 -23.26910 -22.22939 -21.89289 -20.24493 -19.85304 -18.13320 -17.83473 -17.23634 -16.89556 -16.63676 -16.02516 -15.73572 -15.26006 -15.11887 -14.77600 -14.37697 -14.16142 -13.99603 -13.77030 -13.66956 -13.57386 -13.34780 -12.97504 -12.58371 -12.30208 -12.14727 -12.11027 -11.86944 -11.83733 -11.38144 -11.19228 -11.04464 -11.00576 -10.81061 -10.66846 -10.51014 -10.10400 -10.05997 -9.67539 -9.63870 -9.57210 -9.28564 -8.71818 -8.63851 -8.29365 -6.87330 -5.72416 -3.06630 0.92665 1.05839 2.73232 3.07104 3.39039 3.44357 3.46897 3.48368 4.07971 4.40761 4.47375 4.47870 4.61743 4.69354 4.90613 4.93686 5.04191 5.11043 5.23866 5.26358 5.31401 5.37489 5.46943 5.55960 5.61952 5.65528 5.69164 5.80874 5.85027 5.92296 5.96720 6.02182 6.07944 6.18610 6.27977 6.29301 6.34293 6.48842 6.57375 6.69142 6.71285 6.96074 7.04235 7.53816 7.57391 7.62071 7.81498 8.21988 8.34017 9.19268 9.79027 10.44748 11.38841 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002577 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.443757 B =10861.094720 C =11295.845167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.131 3.869 13 H 0.101 0.899 14 C 0.156 3.844 15 H 0.059 0.941 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.105 3.895 19 N -0.594 5.594 20 C 0.509 3.491 21 O -0.534 6.534 22 C -0.102 4.102 23 C -0.072 4.072 24 C -0.076 4.076 25 C -0.152 4.152 26 C 0.093 3.907 27 F -0.143 7.143 28 C -0.152 4.152 29 C -0.076 4.076 30 H 0.252 0.748 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -22.639 -0.931 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.027 3.973 13 H 0.119 0.881 14 C 0.047 3.953 15 H 0.077 0.923 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.018 4.018 19 N -0.326 5.326 20 C 0.297 3.703 21 O -0.410 6.410 22 C -0.142 4.142 23 C -0.072 4.072 24 C -0.094 4.094 25 C -0.171 4.171 26 C 0.074 3.926 27 F -0.122 7.122 28 C -0.171 4.171 29 C -0.094 4.094 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.587 -22.198 -0.267 22.256 hybrid contribution 0.357 0.890 0.054 0.960 sum 1.944 -21.308 -0.213 21.398 Atomic orbital electron populations 1.69963 1.04863 1.24951 1.57051 1.24799 0.95708 0.97632 1.02250 0.86055 0.78705 0.83829 0.77220 1.20532 1.21807 1.21756 1.19072 0.90430 0.82197 1.43686 0.90403 1.44725 1.01485 0.99335 1.86756 1.21175 0.84319 0.87769 1.01242 1.23101 0.96464 0.99779 0.99671 1.21783 0.96477 0.78024 1.01056 0.88096 1.21449 0.94567 0.86186 0.93103 0.92330 1.22174 1.01934 0.93047 0.99746 1.21927 0.97375 0.97248 1.00682 1.21872 0.98680 0.98725 0.82480 1.47667 1.70240 1.06827 1.07837 1.20462 0.77190 0.87365 0.85322 1.90728 1.48214 1.82157 1.19931 1.20731 1.05015 0.91851 0.96575 1.19390 0.93546 0.97707 0.96588 1.20859 0.98873 0.96215 0.93465 1.21090 0.96338 1.00906 0.98743 1.17722 0.94835 0.95314 0.84749 1.91487 1.96723 1.74301 1.49668 1.21087 0.98136 1.01711 0.96160 1.20853 0.97039 0.95681 0.95830 0.93784 0.93087 0.94044 0.92300 0.92115 0.92125 0.91849 0.91833 0.91338 0.91178 0.90092 0.87851 0.87783 0.85098 0.84790 0.84797 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.33 55.49 0.57 -26.24 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.14 10.29 -15.06 -0.16 -6.30 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.75 2.91 -161.92 -0.47 -15.23 16 10 C 0.18 4.30 5.20 -2.88 -0.01 4.29 16 11 C -0.15 -2.84 6.08 -25.17 -0.15 -2.99 16 12 C 0.13 2.38 3.10 -67.28 -0.21 2.17 16 13 H 0.10 2.13 6.96 -51.93 -0.36 1.77 16 14 C 0.16 3.07 3.60 -66.10 -0.24 2.84 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.13 -2.14 5.15 -26.63 -0.14 -2.27 16 17 C -0.13 -1.56 6.09 -26.63 -0.16 -1.72 16 18 C 0.11 1.11 6.05 -3.60 -0.02 1.09 16 19 N -0.59 -8.36 2.73 -164.95 -0.45 -8.81 16 20 C 0.51 7.13 7.65 -10.98 -0.08 7.04 16 21 O -0.53 -9.84 15.36 5.56 0.09 -9.75 16 22 C -0.10 -0.93 4.15 -29.03 -0.12 -1.05 16 23 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 24 C -0.08 -0.77 9.70 -39.59 -0.38 -1.15 16 25 C -0.15 -1.55 10.03 -39.51 -0.40 -1.94 16 26 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 27 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 28 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 29 C -0.08 -0.76 9.70 -39.59 -0.38 -1.15 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 32 H 0.04 1.08 7.59 -51.93 -0.39 0.69 16 33 H 0.06 1.01 6.81 -51.93 -0.35 0.65 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.13 7.14 -51.93 -0.37 0.76 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.73 7.52 -51.93 -0.39 0.34 16 40 H 0.08 0.57 5.83 -51.93 -0.30 0.27 16 41 H 0.10 0.70 7.87 -51.93 -0.41 0.29 16 42 H 0.10 0.71 7.56 -51.93 -0.39 0.31 16 43 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -32.53 367.10 -10.12 -42.65 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.70 Total: 0.36 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.70 Total: -3.87 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.35 Total: -50.27 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.53 -10.12 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds