Wall clock time and date at job start Sat Apr 11 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99628 * 2 1 4 4 H 1.48496 * 109.47167 * 269.72012 * 3 2 1 5 5 H 1.48500 * 109.47292 * 29.72702 * 3 2 1 6 6 H 1.48506 * 109.47094 * 149.72231 * 3 2 1 7 7 C 1.38805 * 120.00488 * 179.72110 * 2 1 3 8 8 H 1.07996 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64625 * 14.70518 * 9 7 2 11 11 C 1.54910 * 104.83486 * 155.83328 * 10 9 7 12 12 C 1.55163 * 101.57707 * 37.00650 * 11 10 9 13 13 C 1.47022 * 125.65203 * 194.39434 * 9 7 2 14 14 H 1.09008 * 109.88199 * 300.51904 * 13 9 7 15 15 C 1.53003 * 109.88008 * 61.67578 * 13 9 7 16 16 N 1.46500 * 109.47038 * 183.74371 * 15 13 9 17 17 C 1.34776 * 119.99797 * 185.66485 * 16 15 13 18 18 O 1.21276 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99724 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.32583 * 120.00085 * 124.99927 * 20 19 17 22 22 C 1.47790 * 119.99909 * 179.97438 * 21 20 19 23 23 C 1.39550 * 120.11871 * 359.72308 * 22 21 20 24 24 C 1.37925 * 119.88355 * 179.69807 * 23 22 21 25 25 C 1.38578 * 120.11635 * 0.57729 * 24 23 22 26 26 F 1.35106 * 119.88512 * 179.73982 * 25 24 23 27 27 C 1.38579 * 120.23182 * 359.72139 * 25 24 23 28 28 C 1.37923 * 120.11798 * 359.97438 * 27 25 24 29 29 H 0.97004 * 119.99726 * 0.28288 * 1 2 3 30 30 H 1.09001 * 110.37002 * 274.67375 * 10 9 7 31 31 H 1.09005 * 110.36582 * 36.88595 * 10 9 7 32 32 H 1.08994 * 111.00957 * 155.08213 * 11 10 9 33 33 H 1.09006 * 111.00491 * 278.93943 * 11 10 9 34 34 H 1.08995 * 110.71953 * 82.86390 * 12 11 10 35 35 H 1.09004 * 110.71693 * 206.13719 * 12 11 10 36 36 H 1.09005 * 109.47140 * 303.74548 * 15 13 9 37 37 H 1.09003 * 109.46670 * 63.74348 * 15 13 9 38 38 H 0.97000 * 119.99708 * 5.66891 * 16 15 13 39 39 H 1.09008 * 109.46553 * 299.99585 * 19 17 16 40 40 H 1.08995 * 109.47353 * 59.99627 * 19 17 16 41 41 H 1.07996 * 119.99825 * 304.99404 * 20 19 17 42 42 H 1.08005 * 119.99886 * 359.97438 * 21 20 19 43 43 H 1.07996 * 120.05482 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.94551 * 180.29424 * 24 23 22 45 45 H 1.07995 * 119.93842 * 179.97438 * 27 25 24 46 46 H 1.07994 * 120.06275 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5035 2.0431 -1.4000 5 1 1.4446 2.6544 0.6942 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2020 0.0054 9 7 1.3256 -2.3880 0.0111 10 6 -0.1074 -2.5541 -0.2928 11 6 -0.2461 -4.0250 -0.7587 12 6 0.7647 -4.7436 0.1738 13 6 1.8992 -3.7073 0.3144 14 1 2.7003 -3.9339 -0.3893 15 6 2.4402 -3.7228 1.7456 16 7 3.0887 -5.0099 2.0085 17 6 3.5406 -5.2965 3.2455 18 8 3.4107 -4.4888 4.1408 19 6 4.2082 -6.6202 3.5158 20 6 4.6168 -6.6901 4.9646 21 6 4.2087 -7.7000 5.7206 22 6 4.6099 -7.7687 7.1413 23 6 5.4230 -6.7751 7.6882 24 6 5.7894 -6.8408 9.0163 25 6 5.3614 -7.8974 9.8042 26 9 5.7274 -7.9598 11.1033 27 6 4.5590 -8.8900 9.2645 28 6 4.1817 -8.8306 7.9392 29 1 -0.4850 0.8401 -0.0041 30 1 -0.7072 -2.3811 0.6007 31 1 -0.4079 -1.8725 -1.0885 32 1 -1.2588 -4.3930 -0.5947 33 1 0.0425 -4.1325 -1.8044 34 1 0.3113 -4.9582 1.1414 35 1 1.1356 -5.6573 -0.2908 36 1 3.1655 -2.9186 1.8686 37 1 1.6175 -3.5806 2.4464 38 1 3.1929 -5.6557 1.2923 39 1 3.5123 -7.4298 3.2955 40 1 5.0909 -6.7178 2.8838 41 1 5.2421 -5.9176 5.3872 42 1 3.5831 -8.4724 5.2981 43 1 5.7610 -5.9539 7.0738 44 1 6.4147 -6.0698 9.4418 45 1 4.2286 -9.7115 9.8828 46 1 3.5561 -9.6044 7.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:20 Heat of formation + Delta-G solvation = -25.726978 kcal Electronic energy + Delta-G solvation = -26655.809051 eV Core-core repulsion = 22653.349891 eV Total energy + Delta-G solvation = -4002.459161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.16932 -39.68462 -39.25845 -37.67011 -35.09737 -34.22546 -32.50944 -31.52168 -31.24898 -29.68680 -28.80677 -27.08278 -24.85168 -23.90039 -23.53192 -22.51446 -20.57614 -20.13940 -19.74975 -19.37388 -18.07979 -17.24995 -16.66830 -16.47919 -16.15869 -15.86561 -15.81713 -15.18187 -14.86563 -14.63962 -14.28214 -13.92543 -13.90581 -13.81293 -13.47792 -13.23817 -12.98971 -12.90992 -12.66203 -12.11616 -11.94197 -11.90638 -11.71836 -11.63489 -11.32806 -11.14465 -10.96742 -10.80334 -10.34646 -10.26948 -10.13101 -9.98106 -9.87058 -9.75850 -9.58876 -9.46889 -8.69398 -8.59253 -8.28491 -6.86483 -5.79014 -3.15826 0.47649 0.91713 2.10626 2.83931 3.36554 3.40064 3.44311 3.45857 3.55440 3.94782 4.30350 4.37446 4.46782 4.53766 4.79244 4.81789 4.91091 5.01553 5.17030 5.26128 5.31651 5.34408 5.38173 5.49130 5.56660 5.59887 5.68214 5.78191 5.78443 5.91271 5.95982 6.03374 6.11061 6.21352 6.33395 6.42803 6.48458 6.52384 6.57923 6.60248 6.68362 6.78958 7.03501 7.48961 7.58525 7.76310 7.76847 8.23196 8.46545 9.15003 9.75682 10.42812 11.32954 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.001912 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.413542 B =14638.099992 C =15699.060042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.724 5.724 17 C 0.508 3.492 18 O -0.540 6.540 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.055 4.055 23 C -0.087 4.087 24 C -0.149 4.149 25 C 0.090 3.910 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.085 4.085 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -20.923 10.192 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.375 5.375 17 C 0.293 3.707 18 O -0.417 6.417 19 C -0.155 4.155 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.055 4.055 23 C -0.105 4.105 24 C -0.168 4.168 25 C 0.071 3.929 26 F -0.121 7.121 27 C -0.171 4.171 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.495 -20.050 10.876 24.341 hybrid contribution 0.512 0.630 0.017 0.812 sum 9.007 -19.420 10.893 24.019 Atomic orbital electron populations 1.69935 1.05025 1.25345 1.55794 1.24919 0.95693 0.97899 1.01376 0.86144 0.78813 0.83387 0.77566 1.21519 1.21566 1.20522 1.18971 0.90373 0.82175 1.44751 0.90665 1.44476 1.06360 1.01066 1.79437 1.21459 0.84820 0.90116 0.98900 1.23012 0.97584 0.99654 0.98529 1.22602 0.97107 0.96951 0.99692 1.21128 0.94467 0.88089 0.91966 0.94540 1.22234 0.97077 0.83104 0.99224 1.46163 1.60323 1.20377 1.10652 1.20450 0.79040 0.88423 0.82807 1.90727 1.56763 1.49969 1.44270 1.20798 1.02000 0.96788 0.95938 1.22996 0.98140 0.97015 0.94017 1.21541 1.01941 0.99971 0.91530 1.19109 0.97524 0.94830 0.94071 1.21265 0.96519 0.98428 0.94254 1.21107 1.02740 0.98424 0.94505 1.17819 0.99331 0.97087 0.78706 1.91497 1.90112 1.96356 1.34121 1.21070 1.00086 0.99376 0.96574 1.21119 0.98869 0.97711 0.92566 0.93576 0.95601 0.90962 0.92346 0.92304 0.91833 0.92432 0.91569 0.91649 0.77125 0.88384 0.87647 0.86094 0.86042 0.84491 0.84611 0.84716 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.58 55.49 0.59 -25.91 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.35 9.74 -15.06 -0.15 -6.50 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.39 3.13 -162.58 -0.51 -14.89 16 10 C 0.17 4.04 5.42 -2.53 -0.01 4.03 16 11 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 12 C -0.13 -2.01 6.16 -24.90 -0.15 -2.16 16 13 C 0.15 2.90 3.20 -66.96 -0.21 2.69 16 14 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 15 C 0.11 2.03 5.09 -4.04 -0.02 2.01 16 16 N -0.72 -9.98 5.34 -60.29 -0.32 -10.30 16 17 C 0.51 7.17 7.82 -10.99 -0.09 7.08 16 18 O -0.54 -10.29 16.02 5.56 0.09 -10.20 16 19 C -0.12 -1.02 6.15 -29.03 -0.18 -1.20 16 20 C -0.10 -1.01 8.18 -36.21 -0.30 -1.30 16 21 C -0.13 -1.15 9.52 -37.58 -0.36 -1.51 16 22 C -0.06 -0.51 5.87 -105.01 -0.62 -1.13 16 23 C -0.09 -0.82 9.40 -39.21 -0.37 -1.19 16 24 C -0.15 -1.37 10.01 -39.57 -0.40 -1.77 16 25 C 0.09 0.87 7.30 -39.33 -0.29 0.58 16 26 F -0.14 -1.47 17.26 2.25 0.04 -1.43 16 27 C -0.15 -1.27 10.01 -39.57 -0.40 -1.66 16 28 C -0.08 -0.68 9.78 -39.20 -0.38 -1.06 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 37 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.40 4.08 8.39 -40.82 -0.34 3.74 16 39 H 0.10 0.65 7.81 -51.92 -0.41 0.24 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 1.25 6.03 -52.49 -0.32 0.94 16 42 H 0.12 0.83 7.87 -52.48 -0.41 0.41 16 43 H 0.14 1.18 6.16 -52.49 -0.32 0.85 16 44 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -32.91 385.39 -10.25 -43.17 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.74 Total: 2.88 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.18 Total: -6.07 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.24 Total: -51.10 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.91 -10.25 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.442 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds