Wall clock time and date at job start Sat Apr 11 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47309 * 270.00137 * 3 2 1 5 5 H 1.48503 * 109.46947 * 29.99810 * 3 2 1 6 6 H 1.48498 * 109.47372 * 149.99945 * 3 2 1 7 7 C 1.38814 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00074 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.65104 * 9.02033 * 9 7 2 11 11 C 1.54909 * 104.83510 * 155.90515 * 10 9 7 12 12 C 1.55403 * 101.66490 * 36.92606 * 11 10 9 13 13 C 1.47023 * 125.64886 * 189.05839 * 9 7 2 14 14 H 1.08995 * 109.88255 * 300.59672 * 13 9 7 15 15 C 1.52995 * 109.87955 * 61.60856 * 13 9 7 16 16 N 1.46504 * 109.47054 * 183.50123 * 15 13 9 17 17 C 1.34781 * 119.99990 * 175.09965 * 16 15 13 18 18 O 1.21280 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99964 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47341 * 180.02562 * 19 17 16 21 21 C 1.32571 * 120.00012 * 127.36683 * 20 19 17 22 22 C 1.47798 * 119.99989 * 7.67074 * 21 20 19 23 23 C 1.39550 * 120.11585 * 216.64688 * 22 21 20 24 24 C 1.37934 * 119.88184 * 179.72199 * 23 22 21 25 25 C 1.38576 * 120.11335 * 0.57949 * 24 23 22 26 26 F 1.35101 * 119.87875 * 179.71569 * 25 24 23 27 27 C 1.38576 * 120.23442 * 359.69461 * 25 24 23 28 28 C 1.37923 * 120.11439 * 0.02562 * 27 25 24 29 29 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36683 * 274.75029 * 10 9 7 31 31 H 1.09004 * 110.36368 * 36.95440 * 10 9 7 32 32 H 1.08996 * 111.00118 * 155.08585 * 11 10 9 33 33 H 1.09001 * 111.00167 * 278.93752 * 11 10 9 34 34 H 1.09004 * 110.85135 * 206.30536 * 12 11 10 35 35 H 1.08991 * 110.69609 * 82.95180 * 12 11 10 36 36 H 1.09004 * 109.47591 * 63.50443 * 15 13 9 37 37 H 1.08999 * 109.47294 * 303.50049 * 15 13 9 38 38 H 0.97000 * 120.00147 * 355.10784 * 16 15 13 39 39 H 1.09006 * 109.46564 * 60.00443 * 19 17 16 40 40 H 1.08996 * 109.47236 * 300.00932 * 19 17 16 41 41 H 1.08004 * 120.00168 * 307.37288 * 20 19 17 42 42 H 1.08001 * 120.00075 * 187.94429 * 21 20 19 43 43 H 1.08007 * 120.05970 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.93728 * 180.29257 * 24 23 22 45 45 H 1.07997 * 119.93867 * 180.02562 * 27 25 24 46 46 H 1.08002 * 120.05451 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1287 -2.5406 -0.1878 11 6 -0.3107 -3.9851 -0.7170 12 6 0.7768 -4.7528 0.0850 13 6 1.9188 -3.7200 0.1892 14 1 2.6610 -3.9084 -0.5865 15 6 2.5746 -3.8068 1.5687 16 7 3.2343 -5.1067 1.7148 17 6 3.9654 -5.3714 2.8158 18 8 4.0767 -4.5337 3.6857 19 6 4.6436 -6.7087 2.9663 20 6 5.3898 -6.7490 4.2749 21 6 5.1855 -7.7464 5.1241 22 6 4.3588 -8.9031 4.7203 23 6 3.5195 -9.5216 5.6478 24 6 2.7457 -10.5972 5.2643 25 6 2.8099 -11.0711 3.9636 26 9 2.0542 -12.1285 3.5946 27 6 3.6459 -10.4641 3.0402 28 6 4.4195 -9.3844 3.4119 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6493 -2.4159 0.7617 31 1 -0.4944 -1.8185 -0.9178 32 1 -1.3067 -4.3630 -0.4864 33 1 -0.1130 -4.0367 -1.7877 34 1 1.1064 -5.6386 -0.4581 35 1 0.4079 -5.0211 1.0748 36 1 1.8129 -3.6972 2.3407 37 1 3.3126 -3.0112 1.6709 38 1 3.1451 -5.7768 1.0192 39 1 5.3436 -6.8556 2.1438 40 1 3.8941 -7.4999 2.9513 41 1 6.0911 -5.9654 4.5211 42 1 5.6194 -7.7116 6.1125 43 1 3.4721 -9.1558 6.6629 44 1 2.0923 -11.0736 5.9801 45 1 3.6919 -10.8371 2.0277 46 1 5.0704 -8.9117 2.6913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:23 Heat of formation + Delta-G solvation = -16.045326 kcal Electronic energy + Delta-G solvation = -27469.080896 eV Core-core repulsion = 23467.041564 eV Total energy + Delta-G solvation = -4002.039333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18271 -39.98530 -39.18175 -37.64669 -35.21621 -34.22522 -32.49091 -31.67252 -30.56344 -29.66012 -28.87366 -27.53365 -24.87902 -23.90514 -23.28588 -22.82721 -20.64923 -20.09074 -19.66167 -19.33825 -17.93332 -17.28743 -16.72316 -16.34919 -16.19485 -15.92354 -15.64878 -15.56161 -14.81795 -14.51686 -14.26806 -14.11091 -13.88986 -13.78332 -13.56148 -13.30926 -13.11139 -12.94215 -12.41402 -12.12954 -12.04661 -11.88718 -11.75401 -11.37902 -11.35069 -11.26084 -10.97918 -10.79971 -10.22251 -10.13249 -10.06121 -9.92528 -9.86195 -9.69575 -9.58477 -9.41188 -8.71762 -8.58998 -8.42549 -6.89213 -5.74853 -3.12358 0.53284 0.86308 2.00289 2.85690 3.27943 3.38890 3.44985 3.46884 3.54621 3.92589 4.35689 4.39749 4.47903 4.51123 4.66532 4.80026 4.92750 5.02534 5.16559 5.24562 5.32438 5.38215 5.45804 5.49927 5.57167 5.60881 5.66548 5.75993 5.79476 5.81080 6.01099 6.03158 6.11832 6.21605 6.30004 6.44185 6.45042 6.52592 6.54932 6.61123 6.69477 6.79470 7.03797 7.53517 7.57351 7.77582 7.80015 8.25938 8.47894 9.16909 9.77548 10.42758 11.34739 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002408 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.814213 B =11627.049783 C =12821.178437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.166 3.834 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.724 5.724 17 C 0.509 3.491 18 O -0.541 6.541 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.137 4.137 22 C -0.060 4.060 23 C -0.082 4.082 24 C -0.152 4.152 25 C 0.093 3.907 26 F -0.141 7.141 27 C -0.152 4.152 28 C -0.091 4.091 29 H 0.253 0.747 30 H 0.020 0.980 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.814 -22.886 6.308 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.186 4.186 12 C -0.166 4.166 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.375 5.375 17 C 0.294 3.706 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.117 4.117 21 C -0.155 4.155 22 C -0.060 4.060 23 C -0.100 4.100 24 C -0.171 4.171 25 C 0.074 3.926 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.109 4.109 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.228 0.772 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.777 -22.029 6.905 24.361 hybrid contribution 0.202 0.391 -0.246 0.504 sum 7.979 -21.638 6.659 24.004 Atomic orbital electron populations 1.69923 1.04966 1.25171 1.56457 1.24842 0.95714 0.97825 1.01742 0.86115 0.78754 0.83339 0.77563 1.21538 1.21589 1.20552 1.19017 0.90464 0.82244 1.44149 0.90516 1.44514 1.03672 0.99921 1.83299 1.21608 0.84225 0.91027 0.98967 1.23047 0.97064 0.99415 0.99123 1.22667 0.96947 0.96948 1.00018 1.21107 0.93951 0.87809 0.92749 0.94475 1.22240 0.96651 0.82896 0.99902 1.46149 1.51658 1.18492 1.21209 1.20465 0.79262 0.88780 0.82087 1.90715 1.61680 1.48569 1.40875 1.21310 1.00623 0.97046 0.98307 1.22939 0.97295 0.97530 0.93963 1.21563 1.00473 0.93770 0.99657 1.19185 0.97220 0.96215 0.93408 1.21165 0.94630 0.94265 0.99911 1.21113 1.02127 0.98828 0.94994 1.17821 0.93736 0.87086 0.93957 1.91505 1.74157 1.54207 1.92108 1.21109 0.98171 0.97747 1.00081 1.21356 0.98725 0.95079 0.95707 0.93631 0.96170 0.89660 0.92368 0.92287 0.92357 0.91863 0.92102 0.91215 0.77164 0.87829 0.87387 0.85566 0.85483 0.84737 0.84669 0.84480 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.36 55.49 0.57 -26.09 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.30 9.76 -15.06 -0.15 -6.45 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.57 3.13 -162.57 -0.51 -15.08 16 10 C 0.17 3.96 5.55 -2.53 -0.01 3.94 16 11 C -0.15 -2.69 7.09 -24.45 -0.17 -2.86 16 12 C -0.13 -2.08 6.03 -24.76 -0.15 -2.23 16 13 C 0.15 2.96 3.23 -66.95 -0.22 2.74 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.06 5.08 -4.04 -0.02 2.04 16 16 N -0.72 -10.36 5.39 -60.29 -0.33 -10.69 16 17 C 0.51 7.47 7.82 -10.99 -0.09 7.38 16 18 O -0.54 -10.50 16.02 5.56 0.09 -10.41 16 19 C -0.13 -1.28 4.42 -29.04 -0.13 -1.41 16 20 C -0.10 -0.97 8.71 -36.22 -0.32 -1.28 16 21 C -0.14 -1.18 9.80 -37.58 -0.37 -1.54 16 22 C -0.06 -0.51 5.20 -105.01 -0.55 -1.06 16 23 C -0.08 -0.66 9.78 -39.20 -0.38 -1.04 16 24 C -0.15 -1.24 10.01 -39.57 -0.40 -1.64 16 25 C 0.09 0.84 7.30 -39.33 -0.29 0.56 16 26 F -0.14 -1.41 17.26 2.25 0.04 -1.37 16 27 C -0.15 -1.20 10.01 -39.57 -0.40 -1.59 16 28 C -0.09 -0.69 7.29 -39.21 -0.29 -0.98 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 2.27 6.51 -51.93 -0.34 1.93 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.02 7.79 -51.93 -0.40 0.62 16 36 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 37 H 0.07 1.53 7.88 -51.93 -0.41 1.12 16 38 H 0.40 4.33 8.20 -40.82 -0.33 3.99 16 39 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 40 H 0.11 0.94 4.73 -51.93 -0.25 0.69 16 41 H 0.13 1.29 8.05 -52.48 -0.42 0.86 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.14 0.81 6.19 -52.49 -0.32 0.48 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -32.90 380.08 -10.10 -43.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.66 Total: 3.44 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -4.01 Total: -5.65 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.26 Total: -51.86 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.90 -10.10 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds