Wall clock time and date at job start Sat Apr 11 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47309 * 270.00137 * 3 2 1 5 5 H 1.48503 * 109.46947 * 29.99810 * 3 2 1 6 6 H 1.48498 * 109.47372 * 149.99945 * 3 2 1 7 7 C 1.38814 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00074 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.65104 * 9.02033 * 9 7 2 11 11 C 1.54909 * 104.83510 * 155.90515 * 10 9 7 12 12 C 1.55403 * 101.66490 * 36.92606 * 11 10 9 13 13 C 1.47023 * 125.64886 * 189.05839 * 9 7 2 14 14 H 1.08995 * 109.88255 * 300.59672 * 13 9 7 15 15 C 1.52995 * 109.87955 * 61.60856 * 13 9 7 16 16 N 1.46504 * 109.47054 * 183.50123 * 15 13 9 17 17 C 1.34781 * 119.99990 * 175.09965 * 16 15 13 18 18 O 1.21280 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99964 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47341 * 180.02562 * 19 17 16 21 21 C 1.32571 * 120.00012 * 127.36683 * 20 19 17 22 22 C 1.47798 * 119.99989 * 7.67074 * 21 20 19 23 23 C 1.39550 * 120.11585 * 216.64688 * 22 21 20 24 24 C 1.37934 * 119.88184 * 179.72199 * 23 22 21 25 25 C 1.38576 * 120.11335 * 0.57949 * 24 23 22 26 26 F 1.35101 * 119.87875 * 179.71569 * 25 24 23 27 27 C 1.38576 * 120.23442 * 359.69461 * 25 24 23 28 28 C 1.37923 * 120.11439 * 0.02562 * 27 25 24 29 29 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36683 * 274.75029 * 10 9 7 31 31 H 1.09004 * 110.36368 * 36.95440 * 10 9 7 32 32 H 1.08996 * 111.00118 * 155.08585 * 11 10 9 33 33 H 1.09001 * 111.00167 * 278.93752 * 11 10 9 34 34 H 1.09004 * 110.85135 * 206.30536 * 12 11 10 35 35 H 1.08991 * 110.69609 * 82.95180 * 12 11 10 36 36 H 1.09004 * 109.47591 * 63.50443 * 15 13 9 37 37 H 1.08999 * 109.47294 * 303.50049 * 15 13 9 38 38 H 0.97000 * 120.00147 * 355.10784 * 16 15 13 39 39 H 1.09006 * 109.46564 * 60.00443 * 19 17 16 40 40 H 1.08996 * 109.47236 * 300.00932 * 19 17 16 41 41 H 1.08004 * 120.00168 * 307.37288 * 20 19 17 42 42 H 1.08001 * 120.00075 * 187.94429 * 21 20 19 43 43 H 1.08007 * 120.05970 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.93728 * 180.29257 * 24 23 22 45 45 H 1.07997 * 119.93867 * 180.02562 * 27 25 24 46 46 H 1.08002 * 120.05451 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1287 -2.5406 -0.1878 11 6 -0.3107 -3.9851 -0.7170 12 6 0.7768 -4.7528 0.0850 13 6 1.9188 -3.7200 0.1892 14 1 2.6610 -3.9084 -0.5865 15 6 2.5746 -3.8068 1.5687 16 7 3.2343 -5.1067 1.7148 17 6 3.9654 -5.3714 2.8158 18 8 4.0767 -4.5337 3.6857 19 6 4.6436 -6.7087 2.9663 20 6 5.3898 -6.7490 4.2749 21 6 5.1855 -7.7464 5.1241 22 6 4.3588 -8.9031 4.7203 23 6 3.5195 -9.5216 5.6478 24 6 2.7457 -10.5972 5.2643 25 6 2.8099 -11.0711 3.9636 26 9 2.0542 -12.1285 3.5946 27 6 3.6459 -10.4641 3.0402 28 6 4.4195 -9.3844 3.4119 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6493 -2.4159 0.7617 31 1 -0.4944 -1.8185 -0.9178 32 1 -1.3067 -4.3630 -0.4864 33 1 -0.1130 -4.0367 -1.7877 34 1 1.1064 -5.6386 -0.4581 35 1 0.4079 -5.0211 1.0748 36 1 1.8129 -3.6972 2.3407 37 1 3.3126 -3.0112 1.6709 38 1 3.1451 -5.7768 1.0192 39 1 5.3436 -6.8556 2.1438 40 1 3.8941 -7.4999 2.9513 41 1 6.0911 -5.9654 4.5211 42 1 5.6194 -7.7116 6.1125 43 1 3.4721 -9.1558 6.6629 44 1 2.0923 -11.0736 5.9801 45 1 3.6919 -10.8371 2.0277 46 1 5.0704 -8.9117 2.6913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:22 Heat of formation + Delta-G solvation = -35.442813 kcal Electronic energy + Delta-G solvation = -27469.922035 eV Core-core repulsion = 23467.041564 eV Total energy + Delta-G solvation = -4002.880471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.86627 -40.97759 -40.08076 -39.23192 -36.01228 -35.64924 -34.39273 -32.27082 -31.62372 -31.17281 -30.23967 -28.48981 -26.69261 -25.44838 -23.93431 -23.55358 -22.10519 -21.49614 -21.15761 -20.15805 -18.96138 -18.52270 -17.98644 -17.42282 -17.24694 -16.81642 -16.66036 -16.50363 -16.31294 -15.79761 -15.75238 -15.28009 -14.92063 -14.70911 -14.49407 -14.22762 -14.15081 -13.96619 -13.76486 -13.62615 -13.42796 -13.07173 -13.03816 -12.89290 -12.79096 -12.67280 -12.04866 -11.96154 -11.93458 -11.84402 -11.66520 -11.43869 -11.40603 -10.99984 -10.70779 -10.59471 -10.06829 -9.99566 -9.08988 -8.89900 -7.86146 -5.24538 -0.10537 0.29649 1.30943 1.43417 1.45474 1.53745 1.70422 2.29746 2.51000 2.71742 3.30597 3.32491 3.70561 3.72364 3.80975 3.87813 3.95645 3.97507 4.00361 4.10001 4.26438 4.33466 4.41691 4.44068 4.45233 4.56489 4.58007 4.73627 4.85624 4.97161 4.99303 5.00104 5.07104 5.14972 5.18876 5.21136 5.23037 5.38857 5.39918 5.47859 5.57949 5.64130 5.67894 5.78659 5.79634 5.94873 6.24256 6.65052 7.08804 7.34987 7.76577 8.40391 9.22058 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002408 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.814213 B =11627.049783 C =12821.178437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.613 5.613 10 C 0.167 3.833 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.709 5.709 17 C 0.504 3.496 18 O -0.595 6.595 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.074 4.074 23 C -0.088 4.088 24 C -0.158 4.158 25 C 0.073 3.927 26 F -0.151 7.151 27 C -0.152 4.152 28 C -0.090 4.090 29 H 0.247 0.753 30 H -0.014 1.014 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.417 0.583 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.156 0.844 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -25.712 5.499 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.042 3.958 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.362 5.362 17 C 0.292 3.708 18 O -0.475 6.475 19 C -0.156 4.156 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.075 4.075 23 C -0.106 4.106 24 C -0.177 4.177 25 C 0.054 3.946 26 F -0.130 7.130 27 C -0.171 4.171 28 C -0.108 4.108 29 H 0.056 0.944 30 H 0.004 0.996 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.018 -24.929 6.069 27.196 hybrid contribution -0.146 1.189 0.071 1.200 sum 8.872 -23.740 6.140 26.077 Atomic orbital electron populations 1.70142 1.06187 1.25212 1.58069 1.25618 0.96562 1.00925 1.02562 0.85167 0.77575 0.79517 0.77641 1.20764 1.22168 1.19951 1.19319 0.90763 0.83724 1.42721 0.90534 1.44785 1.04237 1.01210 1.83474 1.21417 0.83685 0.94208 0.96516 1.22907 0.99211 0.95316 0.99753 1.22664 0.94591 0.97232 1.00610 1.21333 0.95456 0.86355 0.92753 0.93056 1.21640 0.95000 0.84381 0.98823 1.45881 1.51085 1.17088 1.22135 1.21451 0.78368 0.90112 0.80851 1.90698 1.63376 1.50768 1.42702 1.21326 1.01185 0.93480 0.99596 1.22906 0.98330 0.98060 0.94774 1.21706 0.99329 0.93277 0.99690 1.19341 0.97573 0.96389 0.94148 1.21371 0.94449 0.94130 1.00631 1.21300 1.02335 0.98917 0.95146 1.18130 0.94382 0.87324 0.94735 1.91479 1.74530 1.54743 1.92221 1.21347 0.97471 0.97501 1.00754 1.21598 0.98641 0.94881 0.95654 0.94363 0.99626 0.93318 0.90004 0.91173 0.87391 0.91614 0.95058 0.94975 0.74586 0.84275 0.85741 0.86645 0.84371 0.83470 0.83577 0.82651 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.34 10.36 21.65 0.22 -57.12 16 2 C -0.06 -3.65 5.48 84.86 0.46 -3.19 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.24 -13.23 9.76 84.03 0.82 -12.41 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -30.73 3.13 -668.25 -2.09 -32.82 16 10 C 0.17 8.12 5.55 86.85 0.48 8.60 16 11 C -0.13 -4.55 7.09 32.07 0.23 -4.33 16 12 C -0.11 -3.30 6.03 31.87 0.19 -3.11 16 13 C 0.15 5.56 3.23 45.34 0.15 5.71 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.13 4.88 5.08 86.38 0.44 5.32 16 16 N -0.71 -18.83 5.39 -463.06 -2.50 -21.33 16 17 C 0.50 14.04 7.82 87.66 0.69 14.73 16 18 O -0.59 -23.30 16.02 -3.03 -0.05 -23.35 16 19 C -0.12 -1.88 4.42 29.10 0.13 -1.75 16 20 C -0.12 -2.16 8.71 24.53 0.21 -1.94 16 21 C -0.12 -1.83 9.80 23.65 0.23 -1.60 16 22 C -0.07 -1.06 5.20 -20.12 -0.10 -1.17 16 23 C -0.09 -1.23 9.78 22.51 0.22 -1.01 16 24 C -0.16 -2.31 10.01 22.28 0.22 -2.09 16 25 C 0.07 1.18 7.30 22.43 0.16 1.35 16 26 F -0.15 -2.80 17.26 44.97 0.78 -2.03 16 27 C -0.15 -1.93 10.01 22.28 0.22 -1.70 16 28 C -0.09 -1.05 7.29 22.51 0.16 -0.89 16 29 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.05 2.70 6.51 -2.38 -0.02 2.68 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.92 7.79 -2.39 -0.02 1.90 16 36 H 0.03 1.36 8.06 -2.38 -0.02 1.34 16 37 H 0.03 1.45 7.88 -2.39 -0.02 1.43 16 38 H 0.42 7.43 8.20 -92.71 -0.76 6.67 16 39 H 0.14 1.26 7.97 -2.38 -0.02 1.24 16 40 H 0.13 1.65 4.73 -2.39 -0.01 1.64 16 41 H 0.12 2.28 8.05 -2.91 -0.02 2.25 16 42 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.16 1.12 6.19 -2.91 -0.02 1.10 16 Total: -1.00 -76.74 380.08 3.55 -73.19 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.23 Total: 14.20 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.92 Total: 0.52 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.36 Total: -111.26 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.74 3.55 -73.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.750 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds