Wall clock time and date at job start Sat Apr 11 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48501 * 109.46865 * 239.99609 * 3 2 1 5 5 H 1.48493 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46951 * 119.99485 * 3 2 1 7 7 C 1.38818 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00532 * 196.91588 * 7 2 1 9 9 N 1.36937 * 119.99824 * 16.90813 * 7 2 1 10 10 C 1.47155 * 120.98343 * 206.24755 * 9 7 2 11 11 C 1.53301 * 108.38181 * 230.51772 * 10 9 7 12 12 O 1.42963 * 109.22528 * 307.69637 * 11 10 9 13 13 C 1.42958 * 114.16511 * 62.58260 * 12 11 10 14 14 H 1.08996 * 109.51439 * 57.34124 * 13 12 11 15 15 C 1.52998 * 109.55469 * 177.47041 * 13 12 11 16 16 N 1.46496 * 109.47297 * 299.87626 * 15 13 12 17 17 C 1.34775 * 120.00262 * 179.97438 * 16 15 13 18 18 O 1.21276 * 120.00061 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99878 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46983 * 179.97438 * 19 17 16 21 21 H 1.08993 * 110.43894 * 305.70349 * 20 19 17 22 22 C 1.54898 * 110.48186 * 68.24489 * 20 19 17 23 23 C 1.55024 * 102.68161 * 156.51763 * 22 20 19 24 24 C 1.54271 * 104.28197 * 322.23089 * 23 22 20 25 25 F 1.39901 * 110.03309 * 264.23614 * 24 23 22 26 26 F 1.39895 * 110.03366 * 142.80451 * 24 23 22 27 27 C 1.53876 * 106.59606 * 23.51995 * 24 23 22 28 28 C 1.47153 * 120.98350 * 26.23162 * 9 7 2 29 29 H 0.96997 * 120.00158 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.68161 * 350.23635 * 10 9 7 31 31 H 1.09003 * 109.68279 * 110.79635 * 10 9 7 32 32 H 1.09000 * 109.51491 * 67.62682 * 11 10 9 33 33 H 1.09005 * 109.50752 * 187.72519 * 11 10 9 34 34 H 1.09008 * 109.46839 * 59.87076 * 15 13 12 35 35 H 1.08997 * 109.47742 * 179.87297 * 15 13 12 36 36 H 0.97006 * 119.99913 * 0.02562 * 16 15 13 37 37 H 1.08998 * 109.47483 * 300.00159 * 19 17 16 38 38 H 1.09006 * 109.47107 * 60.00055 * 19 17 16 39 39 H 1.09000 * 110.75018 * 274.93195 * 22 20 19 40 40 H 1.08996 * 110.75523 * 38.30257 * 22 20 19 41 41 H 1.09000 * 110.52448 * 203.49103 * 23 22 20 42 42 H 1.08998 * 110.48165 * 80.95505 * 23 22 20 43 43 H 1.09005 * 110.03153 * 240.71845 * 27 24 23 44 44 H 1.08997 * 110.03657 * 119.28596 * 27 24 23 45 45 H 1.09002 * 109.67873 * 9.75997 * 28 9 7 46 46 H 1.08996 * 109.71411 * 249.22859 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2224 0.2727 9 7 1.3699 -2.3626 -0.3439 10 6 1.8338 -3.6634 0.1643 11 6 1.9810 -4.6217 -1.0232 12 8 0.7646 -4.6307 -1.7744 13 6 0.4242 -3.3682 -2.3521 14 1 1.2376 -3.0304 -2.9943 15 6 -0.8545 -3.5119 -3.1799 16 7 -0.6375 -4.4910 -4.2477 17 6 -1.6336 -4.7823 -5.1076 18 8 -2.7097 -4.2342 -4.9971 19 6 -1.4101 -5.7891 -6.2065 20 6 -2.6892 -5.9339 -7.0334 21 1 -3.5343 -6.1742 -6.3884 22 6 -2.9684 -4.6361 -7.8316 23 6 -3.8516 -5.1397 -9.0019 24 6 -3.2509 -6.5125 -9.3687 25 9 -2.3527 -6.3738 -10.4323 26 9 -4.2710 -7.4048 -9.7154 27 6 -2.5118 -7.0174 -8.1171 28 6 0.1973 -2.3457 -1.2327 29 1 -0.4850 0.8400 -0.0004 30 1 2.7973 -3.5417 0.6593 31 1 1.1056 -4.0627 0.8702 32 1 2.8001 -4.2886 -1.6606 33 1 2.1907 -5.6265 -0.6563 34 1 -1.6674 -3.8497 -2.5370 35 1 -1.1141 -2.5482 -3.6179 36 1 0.2230 -4.9303 -4.3355 37 1 -0.5976 -5.4508 -6.8495 38 1 -1.1498 -6.7529 -5.7688 39 1 -3.5094 -3.9148 -7.2191 40 1 -2.0398 -4.2062 -8.2070 41 1 -3.7887 -4.4571 -9.8494 42 1 -4.8866 -5.2503 -8.6784 43 1 -1.4533 -7.1544 -8.3383 44 1 -2.9479 -7.9577 -7.7798 45 1 0.0770 -1.3513 -1.6627 46 1 -0.6961 -2.6118 -0.6679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753659063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:39 Heat of formation + Delta-G solvation = -176.379206 kcal Electronic energy + Delta-G solvation = -28826.920256 eV Core-core repulsion = 24387.159100 eV Total energy + Delta-G solvation = -4439.761156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.17828 -47.25312 -39.94368 -38.59545 -37.50939 -34.82063 -34.33523 -31.87660 -31.33229 -30.70054 -29.03927 -27.50562 -26.32019 -24.85007 -23.32849 -21.85710 -21.44128 -20.88730 -20.23502 -19.57519 -17.99280 -17.24044 -17.00670 -16.94522 -16.16888 -16.04127 -15.74359 -15.22388 -15.11205 -14.67948 -14.49507 -14.37266 -14.12663 -13.99234 -13.62227 -13.54043 -13.53287 -13.29312 -12.98389 -12.91421 -12.65698 -12.18802 -12.11633 -11.84682 -11.71894 -11.54706 -11.20362 -11.13420 -11.02301 -10.90517 -10.87405 -10.78139 -10.46667 -10.33398 -10.07936 -9.77427 -9.68421 -9.13083 -8.88981 -8.59553 -6.81146 -5.89348 -3.33253 2.70990 3.18310 3.31918 3.38174 3.38743 3.48009 3.66321 3.87325 4.04609 4.20221 4.39625 4.61182 4.67165 4.71721 4.83494 4.99794 5.09411 5.13523 5.17231 5.27700 5.30945 5.31723 5.46136 5.51611 5.54162 5.57623 5.70810 5.80902 5.87854 5.91525 5.98071 6.01838 6.06746 6.19813 6.32021 6.45253 6.62331 6.72949 7.01181 7.42281 7.61908 7.65778 7.78126 8.27915 8.31546 9.05779 9.68708 10.25586 11.18779 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002129 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.188868 B =13148.748325 C =13858.010039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.055 0.945 15 C 0.132 3.868 16 N -0.720 5.720 17 C 0.509 3.491 18 O -0.543 6.543 19 C -0.135 4.135 20 C -0.072 4.072 21 H 0.095 0.905 22 C -0.116 4.116 23 C -0.162 4.162 24 C 0.279 3.721 25 F -0.200 7.200 26 F -0.202 7.202 27 C -0.161 4.161 28 C 0.152 3.848 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.402 0.598 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -13.766 -16.179 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.073 0.927 15 C 0.009 3.991 16 N -0.371 5.371 17 C 0.295 3.705 18 O -0.421 6.421 19 C -0.175 4.175 20 C -0.091 4.091 21 H 0.113 0.887 22 C -0.154 4.154 23 C -0.200 4.200 24 C 0.243 3.757 25 F -0.181 7.181 26 F -0.183 7.183 27 C -0.199 4.199 28 C 0.026 3.974 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.236 0.764 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.860 -13.376 -16.114 21.296 hybrid contribution 1.090 0.734 -0.054 1.315 sum -2.770 -12.643 -16.168 20.710 Atomic orbital electron populations 1.70003 1.05256 1.25946 1.53365 1.25065 0.95362 0.98529 1.00616 0.86323 0.78901 0.83094 0.78181 1.20957 1.21479 1.20782 1.19144 0.92633 0.84476 1.42490 0.91378 1.44044 1.33726 1.01382 1.52664 1.21606 0.98635 0.87562 0.93971 1.23004 0.86143 0.99609 0.94014 1.87767 1.42184 1.31596 1.69447 1.23146 0.95033 0.86451 0.95832 0.92669 1.21409 0.97649 0.92395 0.87679 1.46010 1.15707 1.44161 1.31244 1.20526 0.84211 0.83106 0.82672 1.90692 1.25073 1.52920 1.73366 1.21732 0.99306 0.99792 0.96683 1.21687 0.98094 0.94156 0.95195 0.88691 1.22627 0.99990 0.97737 0.95025 1.23410 1.01813 0.93615 1.01154 1.21884 0.79461 0.90121 0.84193 1.93012 1.68649 1.96329 1.60128 1.93008 1.60957 1.70813 1.93519 1.23258 1.02547 1.00833 0.93300 1.21308 0.89475 0.97611 0.89038 0.93304 0.91965 0.95552 0.93874 0.90012 0.90789 0.90041 0.76407 0.88633 0.88525 0.88456 0.90807 0.89042 0.88363 0.88531 0.88582 0.88600 0.95080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.14 55.49 0.62 -24.88 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.50 3.05 -171.82 -0.52 -15.02 16 10 C 0.11 2.20 6.74 -3.53 -0.02 2.17 16 11 C 0.05 0.84 6.98 37.31 0.26 1.10 16 12 O -0.39 -6.90 10.14 -35.23 -0.36 -7.26 16 13 C 0.05 0.99 2.86 -26.58 -0.08 0.91 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 2.12 5.37 -4.04 -0.02 2.10 16 16 N -0.72 -9.19 5.45 -60.30 -0.33 -9.52 16 17 C 0.51 6.29 7.63 -10.98 -0.08 6.21 16 18 O -0.54 -8.63 14.61 5.56 0.08 -8.54 16 19 C -0.14 -1.08 5.05 -27.88 -0.14 -1.22 16 20 C -0.07 -0.59 2.45 -88.95 -0.22 -0.81 16 21 H 0.09 0.88 7.96 -51.93 -0.41 0.46 16 22 C -0.12 -1.01 5.70 -24.66 -0.14 -1.15 16 23 C -0.16 -1.28 6.40 -25.00 -0.16 -1.44 16 24 C 0.28 2.47 2.58 -25.61 -0.07 2.40 16 25 F -0.20 -2.05 17.04 2.25 0.04 -2.01 16 26 F -0.20 -2.08 17.04 2.25 0.04 -2.04 16 27 C -0.16 -1.14 6.07 -25.61 -0.16 -1.30 16 28 C 0.15 3.50 4.73 -3.53 -0.02 3.48 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 37 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.01 7.16 -51.93 -0.37 0.64 16 40 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 41 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.10 0.73 8.12 -51.93 -0.42 0.30 16 43 H 0.10 0.58 7.71 -51.93 -0.40 0.18 16 44 H 0.10 0.61 8.02 -51.93 -0.42 0.19 16 45 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -31.20 373.48 -8.19 -39.39 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.28 Total: 2.76 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.07 Total: 5.45 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.23 Total: -49.42 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.28 Total: -15.80 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.20 -8.19 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753659063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.986 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds