Wall clock time and date at job start Sat Apr 11 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38345 * 119.86139 * 2 1 4 4 C 1.37957 * 120.16797 * 179.69960 * 3 2 1 5 5 C 1.39592 * 119.90276 * 0.53408 * 4 3 2 6 6 C 1.47847 * 120.13187 * 179.74015 * 5 4 3 7 7 O 1.21553 * 119.99674 * 26.46274 * 6 5 4 8 8 N 1.34776 * 120.00105 * 206.45643 * 6 5 4 9 9 C 1.49613 * 126.07629 * 356.37741 * 8 6 5 10 10 C 1.51515 * 102.50139 * 154.35059 * 9 8 6 11 11 H 1.08996 * 111.12488 * 288.13915 * 10 9 8 12 12 C 1.51560 * 123.34684 * 151.63660 * 10 9 8 13 13 C 1.56339 * 101.81198 * 207.98007 * 12 10 9 14 14 C 1.56001 * 105.77110 * 25.43709 * 13 12 10 15 15 H 1.08997 * 110.64828 * 248.27677 * 14 13 12 16 16 N 1.46504 * 110.52813 * 125.58240 * 14 13 12 17 17 C 1.36935 * 119.99558 * 90.43465 * 16 14 13 18 18 H 1.07997 * 120.00439 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99899 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99944 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47360 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47105 * 120.00490 * 21 19 17 24 24 H 1.48502 * 109.47041 * 240.00145 * 21 19 17 25 25 C 1.49703 * 103.98533 * 6.95871 * 14 13 12 26 26 H 1.09003 * 107.87844 * 77.72697 * 25 14 13 27 27 C 1.49291 * 126.06804 * 176.37607 * 8 6 5 28 28 C 1.39534 * 119.73392 * 359.47003 * 5 4 3 29 29 C 1.38211 * 119.83007 * 0.27489 * 28 5 4 30 30 F 1.35099 * 119.95296 * 180.02562 * 29 28 5 31 31 H 1.09001 * 109.46579 * 270.02231 * 1 2 3 32 32 H 1.09006 * 109.46797 * 30.01764 * 1 2 3 33 33 H 1.08992 * 109.46720 * 150.01865 * 1 2 3 34 34 H 1.07991 * 119.91782 * 359.95626 * 3 2 1 35 35 H 1.07998 * 120.04587 * 180.27390 * 4 3 2 36 36 H 1.09002 * 110.80422 * 36.09793 * 9 8 6 37 37 H 1.09003 * 110.80265 * 272.60472 * 9 8 6 38 38 H 1.08997 * 110.96021 * 326.10818 * 12 10 9 39 39 H 1.08997 * 110.96106 * 89.85098 * 12 10 9 40 40 H 1.09003 * 110.19515 * 266.36353 * 13 12 10 41 41 H 1.09005 * 110.18932 * 144.50910 * 13 12 10 42 42 H 0.96995 * 120.00366 * 270.43634 * 16 14 13 43 43 H 0.96998 * 120.00135 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.39288 * 292.40956 * 27 8 6 45 45 H 1.08993 * 110.40153 * 54.81283 * 27 8 6 46 46 H 1.08007 * 120.08363 * 180.29905 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5755 1.2072 0.0063 5 6 4.2779 0.0008 0.0013 6 6 5.7563 0.0029 0.0022 7 8 6.3625 0.9441 0.4758 8 7 6.4320 -1.0388 -0.5220 9 6 5.8295 -2.2946 -1.0683 10 6 6.8807 -2.7605 -2.0550 11 1 6.9026 -2.1205 -2.9370 12 6 7.0953 -4.2162 -2.4183 13 6 8.6113 -4.2305 -2.8001 14 6 9.2543 -3.0371 -2.0282 15 1 9.5697 -2.2567 -2.7207 16 7 10.3888 -3.4972 -1.2236 17 6 11.6492 -3.5052 -1.7589 18 1 11.8069 -3.1720 -2.7740 19 6 12.7243 -3.9407 -0.9964 20 7 12.5323 -4.3464 0.2409 21 14 14.4438 -3.9509 -1.7264 22 1 14.3915 -3.4503 -3.1235 23 1 15.3293 -3.0734 -0.9195 24 1 14.9776 -5.3366 -1.7163 25 6 8.1516 -2.5411 -1.1454 26 1 8.0711 -3.2205 -0.2968 27 6 7.9147 -1.1445 -0.6608 28 6 3.5791 -1.2069 0.0013 29 6 2.1970 -1.2015 0.0004 30 9 1.5178 -2.3694 0.0008 31 1 -0.3632 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3632 -0.8901 -0.5135 34 1 1.6524 2.1329 -0.0007 35 1 4.1112 2.1449 0.0107 36 1 4.8884 -2.0834 -1.5762 37 1 5.6870 -3.0313 -0.2777 38 1 6.9024 -4.8640 -1.5632 39 1 6.4763 -4.5011 -3.2690 40 1 8.7301 -4.0912 -3.8746 41 1 9.0687 -5.1698 -2.4891 42 1 10.2473 -3.7962 -0.3118 43 1 13.2835 -4.6510 0.7736 44 1 8.2803 -0.4221 -1.3905 45 1 8.3985 -0.9898 0.3035 46 1 4.1168 -2.1435 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026308821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:14:24 Heat of formation + Delta-G solvation = -18.886268 kcal Electronic energy + Delta-G solvation = -28256.747019 eV Core-core repulsion = 24254.584494 eV Total energy + Delta-G solvation = -4002.162525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.23567 -40.89432 -39.55106 -38.15352 -35.47369 -33.59742 -33.23354 -31.12896 -30.90661 -29.74666 -28.57513 -27.59311 -25.52958 -23.96877 -23.11981 -23.05437 -22.00065 -20.38532 -19.92832 -19.19103 -17.77569 -17.16453 -17.06450 -16.42743 -16.13910 -15.95899 -15.89746 -15.16167 -15.01698 -14.67610 -14.19422 -13.94675 -13.81758 -13.79844 -13.70134 -13.48756 -12.94165 -12.83605 -12.75345 -12.45077 -12.25543 -12.02301 -11.93675 -11.66720 -11.55716 -11.35348 -11.05953 -10.84147 -10.80898 -10.49520 -10.18460 -10.12617 -9.97024 -9.80318 -9.62026 -9.31941 -9.04591 -8.94151 -8.68854 -7.00064 -5.79603 -3.08913 0.41283 0.78797 2.55225 2.73028 3.35017 3.41973 3.47892 3.49981 3.79335 4.02514 4.20642 4.29040 4.45540 4.55889 4.64243 4.81360 4.84338 4.96607 5.11966 5.13552 5.18902 5.22875 5.26326 5.35410 5.51040 5.53587 5.56595 5.59200 5.65740 5.67340 5.82549 5.85517 5.88815 5.90862 5.94930 5.99344 6.09719 6.16788 6.30877 6.33160 6.43528 6.46412 6.59375 6.75747 7.01816 7.40152 7.68936 8.03231 8.38473 9.50037 10.06106 10.40508 11.42843 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.002473 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.747638 B =11320.353478 C =12010.207141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C -0.101 4.101 4 C -0.069 4.069 5 C -0.101 4.101 6 C 0.571 3.429 7 O -0.534 6.534 8 N -0.616 5.616 9 C 0.107 3.893 10 C -0.128 4.128 11 H 0.088 0.912 12 C -0.100 4.100 13 C -0.143 4.143 14 C 0.199 3.801 15 H 0.056 0.944 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.121 4.121 26 H 0.076 0.924 27 C 0.135 3.865 28 C -0.131 4.131 29 C 0.089 3.911 30 F -0.135 7.135 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.723 6.956 -2.939 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.104 4.104 6 C 0.360 3.640 7 O -0.412 6.412 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.147 4.147 11 H 0.107 0.893 12 C -0.138 4.138 13 C -0.184 4.184 14 C 0.087 3.913 15 H 0.074 0.926 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.141 4.141 26 H 0.094 0.906 27 C 0.014 3.986 28 C -0.150 4.150 29 C 0.070 3.930 30 F -0.113 7.113 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.264 7.507 -2.729 26.497 hybrid contribution 0.843 -0.497 0.014 0.979 sum -24.421 7.011 -2.715 25.552 Atomic orbital electron populations 1.20796 0.89840 1.03637 1.03130 1.20169 0.97316 0.91979 1.00656 1.20911 0.93639 0.97296 1.00029 1.21307 0.93794 0.97824 0.95907 1.19748 0.93203 0.93515 1.03927 1.17795 0.86345 0.81649 0.78215 1.90809 1.69593 1.34756 1.46000 1.49765 1.08125 1.17038 1.60080 1.22156 0.96878 0.85953 0.96470 1.22602 0.95357 0.98833 0.97936 0.89334 1.21858 0.97746 0.93399 1.00811 1.23798 0.92861 1.01856 0.99895 1.19949 0.86287 0.93382 0.91658 0.92555 1.42510 1.02391 1.77126 1.13994 1.19286 0.84365 1.36263 0.97202 0.91062 1.24752 0.98020 1.01959 0.96155 1.69667 1.30355 1.49741 1.08228 0.86137 0.84876 0.77170 0.78114 1.20538 1.21872 1.21899 1.22122 0.97003 0.95599 0.99410 0.90559 1.21028 0.78136 0.97285 1.02130 1.21874 0.92632 0.99950 1.00515 1.17354 0.89604 0.81238 1.04799 1.91505 1.79922 1.45915 1.93979 0.90419 0.90649 0.90911 0.84284 0.84085 0.89904 0.90434 0.91473 0.92085 0.92599 0.90694 0.78163 0.93527 0.90984 0.90282 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.83 36.01 0.35 -0.31 16 2 C -0.10 -0.81 5.89 -104.46 -0.62 -1.43 16 3 C -0.10 -0.77 9.68 -39.64 -0.38 -1.16 16 4 C -0.07 -0.69 9.59 -39.18 -0.38 -1.06 16 5 C -0.10 -1.17 5.73 -104.98 -0.60 -1.77 16 6 C 0.57 8.37 7.67 -12.33 -0.09 8.28 16 7 O -0.53 -9.66 17.01 5.32 0.09 -9.57 16 8 N -0.62 -8.46 3.43 -172.69 -0.59 -9.06 16 9 C 0.11 1.17 4.72 -3.06 -0.01 1.15 16 10 C -0.13 -1.55 3.14 -89.46 -0.28 -1.83 16 11 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 12 C -0.10 -1.22 6.61 -25.67 -0.17 -1.39 16 13 C -0.14 -2.28 6.74 -23.33 -0.16 -2.44 16 14 C 0.20 3.66 3.45 -67.95 -0.23 3.42 16 15 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 16 N -0.72 -17.21 5.10 -53.45 -0.27 -17.48 16 17 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.12 -1.87 2.21 -91.23 -0.20 -2.07 16 26 H 0.08 1.26 7.73 -51.93 -0.40 0.85 16 27 C 0.13 2.10 6.83 -4.12 -0.03 2.07 16 28 C -0.13 -1.34 7.94 -39.11 -0.31 -1.65 16 29 C 0.09 0.86 7.23 -39.48 -0.29 0.57 16 30 F -0.13 -1.34 16.46 2.25 0.04 -1.31 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.11 16 33 H 0.07 0.42 7.63 -51.93 -0.40 0.03 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.14 1.35 7.87 -52.49 -0.41 0.93 16 36 H 0.08 0.77 6.16 -51.93 -0.32 0.45 16 37 H 0.08 0.78 7.45 -51.93 -0.39 0.40 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 42 H 0.38 9.86 7.65 -40.82 -0.31 9.54 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.15 1.43 4.59 -52.48 -0.24 1.19 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -31.56 373.04 -9.71 -41.27 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.65 Total: 7.09 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.64 Total: -6.68 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.14 Total: -53.56 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.56 -9.71 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds