Wall clock time and date at job start Sat Apr 11 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37837 * 120.06141 * 2 1 4 4 C 1.38658 * 120.11732 * 180.02562 * 3 2 1 5 5 F 1.35104 * 119.88070 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.24029 * 0.02562 * 4 3 2 7 7 C 1.37841 * 120.11569 * 359.97438 * 6 4 3 8 8 C 1.50699 * 120.05577 * 179.97438 * 7 6 4 9 9 C 1.39641 * 119.87937 * 359.97438 * 7 6 4 10 10 C 1.47734 * 120.11449 * 179.72529 * 9 7 6 11 11 O 1.21566 * 119.99897 * 97.49842 * 10 9 7 12 12 N 1.34773 * 119.99559 * 277.49420 * 10 9 7 13 13 C 1.47169 * 120.70499 * 175.03573 * 12 10 9 14 14 C 1.54320 * 107.80384 * 132.68109 * 13 12 10 15 15 H 1.09001 * 112.53552 * 182.37803 * 14 13 12 16 16 C 1.54556 * 107.98406 * 306.74121 * 14 13 12 17 17 C 1.55851 * 104.99860 * 89.00513 * 16 14 13 18 18 C 1.54551 * 104.09666 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.17708 * 146.80929 * 18 17 16 20 20 C 1.47160 * 120.71421 * 355.30942 * 12 10 9 21 21 N 1.48306 * 104.90716 * 24.75584 * 18 17 16 22 22 C 1.36935 * 128.07799 * 138.83101 * 21 18 17 23 23 H 1.07999 * 120.00316 * 336.02089 * 22 21 18 24 24 C 1.38817 * 120.00080 * 156.02596 * 22 21 18 25 25 N 1.31618 * 119.99813 * 4.67043 * 24 22 21 26 26 Si 1.86800 * 119.99966 * 184.67597 * 24 22 21 27 27 H 1.48497 * 109.47330 * 89.99586 * 26 24 22 28 28 H 1.48498 * 109.47091 * 209.99841 * 26 24 22 29 29 H 1.48500 * 109.47006 * 329.99517 * 26 24 22 30 30 H 1.09007 * 109.47169 * 275.48662 * 1 2 3 31 31 H 1.09005 * 109.47172 * 35.48180 * 1 2 3 32 32 H 1.09000 * 109.47628 * 155.48574 * 1 2 3 33 33 H 1.07994 * 119.94280 * 0.04163 * 3 2 1 34 34 H 1.07991 * 119.93936 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.47309 * 274.87331 * 8 7 6 36 36 H 1.09007 * 109.47252 * 34.87477 * 8 7 6 37 37 H 1.08994 * 109.46991 * 154.87311 * 8 7 6 38 38 H 1.08998 * 109.74991 * 252.38895 * 13 12 10 39 39 H 1.09008 * 109.75153 * 13.12338 * 13 12 10 40 40 H 1.08999 * 110.35921 * 207.85534 * 16 14 13 41 41 H 1.08998 * 110.36214 * 330.06505 * 16 14 13 42 42 H 1.09004 * 110.90256 * 241.33135 * 17 16 14 43 43 H 1.08999 * 110.55336 * 118.52181 * 17 16 14 44 44 H 1.08995 * 109.75022 * 346.88383 * 20 12 10 45 45 H 1.09000 * 109.74390 * 107.56645 * 20 12 10 46 46 H 0.96997 * 119.99926 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1930 0.0000 4 6 3.5840 1.1943 -0.0005 5 9 4.2559 2.3664 -0.0011 6 6 4.2835 -0.0029 -0.0016 7 6 3.6029 -1.2016 -0.0016 8 6 4.3645 -2.5020 -0.0034 9 6 2.2065 -1.2087 0.0000 10 6 1.4718 -2.4904 -0.0061 11 8 1.0515 -2.9550 1.0357 12 7 1.2674 -3.1443 -1.1667 13 6 0.6341 -4.4727 -1.1794 14 6 -0.4614 -4.4628 -2.2663 15 1 -1.0111 -5.4028 -2.3138 16 6 -1.3898 -3.2568 -1.9972 17 6 -0.7462 -2.0706 -2.7766 18 6 0.5070 -2.6894 -3.4364 19 1 0.7290 -2.2369 -4.4029 20 6 1.6781 -2.5480 -2.4479 21 7 0.2022 -4.1362 -3.5520 22 6 0.4709 -4.9748 -4.6006 23 1 0.5937 -4.5731 -5.5956 24 6 0.5854 -6.3413 -4.3849 25 7 0.3454 -6.8415 -3.1914 26 14 1.0804 -7.4702 -5.7885 27 1 2.5591 -7.6025 -5.8195 28 1 0.4678 -8.8079 -5.5874 29 1 0.6076 -6.8976 -7.0745 30 1 -0.3634 0.0983 1.0230 31 1 -0.3634 0.8369 -0.5965 32 1 -0.3634 -0.9350 -0.4264 33 1 1.6575 2.1283 0.0007 34 1 5.3634 0.0038 -0.0016 35 1 4.6222 -2.7707 -1.0278 36 1 5.2764 -2.3898 0.5833 37 1 3.7458 -3.2859 0.4332 38 1 1.3794 -5.2338 -1.4100 39 1 0.1870 -4.6769 -0.2064 40 1 -2.3921 -3.4582 -2.3752 41 1 -1.4246 -3.0356 -0.9305 42 1 -0.4599 -1.2682 -2.0966 43 1 -1.4304 -1.6971 -3.5385 44 1 1.9139 -1.4935 -2.3045 45 1 2.5524 -3.0717 -2.8343 46 1 0.4251 -7.7964 -3.0407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029417841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:38 Heat of formation + Delta-G solvation = -22.978372 kcal Electronic energy + Delta-G solvation = -30426.226489 eV Core-core repulsion = 26423.886517 eV Total energy + Delta-G solvation = -4002.339972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.03364 -40.64459 -38.94608 -37.42093 -33.91258 -33.70411 -32.38942 -31.69448 -30.49022 -29.26544 -27.87764 -27.07856 -26.15120 -24.00778 -23.83739 -22.59043 -21.12919 -20.03107 -19.67710 -18.68469 -17.47195 -17.00578 -16.97526 -16.25185 -15.80120 -15.50285 -15.29271 -14.74026 -14.19866 -13.98957 -13.78947 -13.73432 -13.42551 -13.33632 -13.26128 -13.12115 -13.02206 -12.74911 -12.69313 -12.11894 -11.91804 -11.84056 -11.67940 -11.56519 -11.27635 -11.12163 -10.99519 -10.96871 -10.82127 -10.33375 -10.07498 -9.90175 -9.84834 -9.60017 -9.41761 -8.88304 -8.73649 -8.62095 -8.12218 -6.79403 -5.91480 -3.31324 0.88325 1.06677 2.94138 3.27498 3.31715 3.38259 3.39464 3.61125 4.04144 4.36663 4.52300 4.55276 4.74256 4.90692 5.11578 5.18969 5.28039 5.37137 5.38707 5.54812 5.56367 5.57651 5.60198 5.66313 5.67409 5.73626 5.82826 5.90639 5.92603 6.00304 6.11551 6.16046 6.22580 6.30531 6.36910 6.39427 6.49547 6.61021 6.65024 6.72494 6.78431 6.83860 6.95103 7.25065 7.50166 7.66370 8.00218 8.12649 8.59046 9.00901 9.61747 10.42369 11.21464 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003939 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.473697 B = 7106.971139 C = 7449.361016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C -0.164 4.164 4 C 0.113 3.887 5 F -0.140 7.140 6 C -0.163 4.163 7 C -0.020 4.020 8 C -0.122 4.122 9 C -0.122 4.122 10 C 0.556 3.444 11 O -0.550 6.550 12 N -0.580 5.580 13 C 0.111 3.889 14 C 0.169 3.831 15 H 0.117 0.883 16 C -0.137 4.137 17 C -0.132 4.132 18 C 0.134 3.866 19 H 0.077 0.923 20 C 0.098 3.902 21 N -0.582 5.582 22 C -0.232 4.232 23 H 0.074 0.926 24 C 0.006 3.994 25 N -0.908 5.908 26 Si 0.909 3.091 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 13.637 5.010 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 C -0.182 4.182 4 C 0.094 3.906 5 F -0.119 7.119 6 C -0.182 4.182 7 C -0.021 4.021 8 C -0.178 4.178 9 C -0.125 4.125 10 C 0.343 3.657 11 O -0.429 6.429 12 N -0.311 5.311 13 C -0.012 4.012 14 C 0.062 3.938 15 H 0.135 0.865 16 C -0.176 4.176 17 C -0.171 4.171 18 C 0.026 3.974 19 H 0.095 0.905 20 C -0.028 4.028 21 N -0.303 5.303 22 C -0.361 4.361 23 H 0.091 0.909 24 C -0.192 4.192 25 N -0.553 5.553 26 Si 0.739 3.261 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.696 13.112 5.435 14.667 hybrid contribution 0.630 -0.276 -0.708 0.987 sum 4.326 12.836 4.727 14.346 Atomic orbital electron populations 1.21069 0.90008 1.04063 1.03264 1.19689 0.96490 0.90702 0.95086 1.20853 0.92087 0.99038 1.06269 1.17755 0.90077 0.81046 1.01754 1.91495 1.80548 1.46000 1.93815 1.20857 1.00732 0.90413 1.06216 1.19716 0.91910 0.95367 0.95092 1.20904 0.99992 0.93574 1.03349 1.19914 0.93411 0.94022 1.05173 1.18082 0.79739 0.83805 0.84090 1.90763 1.51964 1.68437 1.31772 1.48245 1.57969 1.19607 1.05293 1.22599 0.97577 0.81134 0.99885 1.21929 0.90481 0.96775 0.84653 0.86534 1.22921 0.99236 0.97127 0.98297 1.22917 0.97970 0.97398 0.98812 1.21934 0.91908 0.88226 0.95363 0.90530 1.22524 0.99319 0.96438 0.84482 1.45076 1.66096 1.03307 1.15835 1.18931 1.42767 0.87658 0.86698 0.90857 1.25022 1.00327 0.97269 0.96569 1.69813 1.52662 1.12213 1.20587 0.86190 0.78412 0.80161 0.81383 1.21447 1.21683 1.20598 0.90171 0.90685 0.89992 0.84407 0.84416 0.89964 0.90779 0.90786 0.90034 0.91228 0.92819 0.92922 0.92263 0.92637 0.91832 0.91661 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.20 36.00 0.33 -1.20 16 2 C -0.02 -0.25 5.83 -104.24 -0.61 -0.86 16 3 C -0.16 -1.90 9.69 -39.57 -0.38 -2.28 16 4 C 0.11 1.35 7.31 -39.27 -0.29 1.06 16 5 F -0.14 -1.67 17.26 2.25 0.04 -1.63 16 6 C -0.16 -1.92 9.68 -39.57 -0.38 -2.31 16 7 C -0.02 -0.27 5.91 -104.24 -0.62 -0.89 16 8 C -0.12 -1.52 9.69 36.01 0.35 -1.17 16 9 C -0.12 -1.83 3.68 -104.97 -0.39 -2.22 16 10 C 0.56 9.96 3.88 -12.38 -0.05 9.91 16 11 O -0.55 -11.60 16.57 5.31 0.09 -11.51 16 12 N -0.58 -10.62 2.25 -172.40 -0.39 -11.01 16 13 C 0.11 2.34 5.84 -2.99 -0.02 2.32 16 14 C 0.17 3.69 3.12 -65.42 -0.20 3.48 16 15 H 0.12 2.91 6.52 -51.93 -0.34 2.57 16 16 C -0.14 -2.53 6.22 -24.39 -0.15 -2.68 16 17 C -0.13 -2.20 6.31 -24.39 -0.15 -2.35 16 18 C 0.13 2.49 4.27 -65.65 -0.28 2.21 16 19 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.10 1.68 5.75 -3.21 -0.02 1.66 16 21 N -0.58 -13.23 2.80 -152.31 -0.43 -13.66 16 22 C -0.23 -5.87 10.34 -15.06 -0.16 -6.03 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.01 0.16 5.49 -17.43 -0.10 0.07 16 25 N -0.91 -24.11 10.25 55.49 0.57 -23.54 16 26 Si 0.91 20.61 29.56 -169.99 -5.02 15.58 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.08 1.15 4.61 -51.93 -0.24 0.91 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.75 8.12 -51.92 -0.42 0.33 16 37 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 38 H 0.08 1.95 7.65 -51.93 -0.40 1.55 16 39 H 0.07 1.49 7.08 -51.92 -0.37 1.13 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16 42 H 0.06 0.88 4.88 -51.93 -0.25 0.63 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.96 6.46 -51.93 -0.34 0.62 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -28.04 361.53 -9.27 -37.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.47 Total: 4.27 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.11 Total: -1.27 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.25 Total: -48.20 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.04 -9.27 -37.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029417841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.331 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds