Wall clock time and date at job start Sat Apr 11 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37837 * 120.06141 * 2 1 4 4 C 1.38658 * 120.11732 * 180.02562 * 3 2 1 5 5 F 1.35104 * 119.88070 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.24029 * 0.02562 * 4 3 2 7 7 C 1.37841 * 120.11569 * 359.97438 * 6 4 3 8 8 C 1.50699 * 120.05577 * 179.97438 * 7 6 4 9 9 C 1.39641 * 119.87937 * 359.97438 * 7 6 4 10 10 C 1.47734 * 120.11449 * 179.72529 * 9 7 6 11 11 O 1.21566 * 119.99897 * 97.49842 * 10 9 7 12 12 N 1.34773 * 119.99559 * 277.49420 * 10 9 7 13 13 C 1.47169 * 120.70499 * 175.03573 * 12 10 9 14 14 C 1.54320 * 107.80384 * 132.68109 * 13 12 10 15 15 H 1.09001 * 112.53552 * 182.37803 * 14 13 12 16 16 C 1.54556 * 107.98406 * 306.74121 * 14 13 12 17 17 C 1.55851 * 104.99860 * 89.00513 * 16 14 13 18 18 C 1.54551 * 104.09666 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.17708 * 146.80929 * 18 17 16 20 20 C 1.47160 * 120.71421 * 355.30942 * 12 10 9 21 21 N 1.48306 * 104.90716 * 24.75584 * 18 17 16 22 22 C 1.36935 * 128.07799 * 138.83101 * 21 18 17 23 23 H 1.07999 * 120.00316 * 336.02089 * 22 21 18 24 24 C 1.38817 * 120.00080 * 156.02596 * 22 21 18 25 25 N 1.31618 * 119.99813 * 4.67043 * 24 22 21 26 26 Si 1.86800 * 119.99966 * 184.67597 * 24 22 21 27 27 H 1.48497 * 109.47330 * 89.99586 * 26 24 22 28 28 H 1.48498 * 109.47091 * 209.99841 * 26 24 22 29 29 H 1.48500 * 109.47006 * 329.99517 * 26 24 22 30 30 H 1.09007 * 109.47169 * 275.48662 * 1 2 3 31 31 H 1.09005 * 109.47172 * 35.48180 * 1 2 3 32 32 H 1.09000 * 109.47628 * 155.48574 * 1 2 3 33 33 H 1.07994 * 119.94280 * 0.04163 * 3 2 1 34 34 H 1.07991 * 119.93936 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.47309 * 274.87331 * 8 7 6 36 36 H 1.09007 * 109.47252 * 34.87477 * 8 7 6 37 37 H 1.08994 * 109.46991 * 154.87311 * 8 7 6 38 38 H 1.08998 * 109.74991 * 252.38895 * 13 12 10 39 39 H 1.09008 * 109.75153 * 13.12338 * 13 12 10 40 40 H 1.08999 * 110.35921 * 207.85534 * 16 14 13 41 41 H 1.08998 * 110.36214 * 330.06505 * 16 14 13 42 42 H 1.09004 * 110.90256 * 241.33135 * 17 16 14 43 43 H 1.08999 * 110.55336 * 118.52181 * 17 16 14 44 44 H 1.08995 * 109.75022 * 346.88383 * 20 12 10 45 45 H 1.09000 * 109.74390 * 107.56645 * 20 12 10 46 46 H 0.96997 * 119.99926 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1930 0.0000 4 6 3.5840 1.1943 -0.0005 5 9 4.2559 2.3664 -0.0011 6 6 4.2835 -0.0029 -0.0016 7 6 3.6029 -1.2016 -0.0016 8 6 4.3645 -2.5020 -0.0034 9 6 2.2065 -1.2087 0.0000 10 6 1.4718 -2.4904 -0.0061 11 8 1.0515 -2.9550 1.0357 12 7 1.2674 -3.1443 -1.1667 13 6 0.6341 -4.4727 -1.1794 14 6 -0.4614 -4.4628 -2.2663 15 1 -1.0111 -5.4028 -2.3138 16 6 -1.3898 -3.2568 -1.9972 17 6 -0.7462 -2.0706 -2.7766 18 6 0.5070 -2.6894 -3.4364 19 1 0.7290 -2.2369 -4.4029 20 6 1.6781 -2.5480 -2.4479 21 7 0.2022 -4.1362 -3.5520 22 6 0.4709 -4.9748 -4.6006 23 1 0.5937 -4.5731 -5.5956 24 6 0.5854 -6.3413 -4.3849 25 7 0.3454 -6.8415 -3.1914 26 14 1.0804 -7.4702 -5.7885 27 1 2.5591 -7.6025 -5.8195 28 1 0.4678 -8.8079 -5.5874 29 1 0.6076 -6.8976 -7.0745 30 1 -0.3634 0.0983 1.0230 31 1 -0.3634 0.8369 -0.5965 32 1 -0.3634 -0.9350 -0.4264 33 1 1.6575 2.1283 0.0007 34 1 5.3634 0.0038 -0.0016 35 1 4.6222 -2.7707 -1.0278 36 1 5.2764 -2.3898 0.5833 37 1 3.7458 -3.2859 0.4332 38 1 1.3794 -5.2338 -1.4100 39 1 0.1870 -4.6769 -0.2064 40 1 -2.3921 -3.4582 -2.3752 41 1 -1.4246 -3.0356 -0.9305 42 1 -0.4599 -1.2682 -2.0966 43 1 -1.4304 -1.6971 -3.5385 44 1 1.9139 -1.4935 -2.3045 45 1 2.5524 -3.0717 -2.8343 46 1 0.4251 -7.7964 -3.0407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029417841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:38 Heat of formation + Delta-G solvation = -36.020825 kcal Electronic energy + Delta-G solvation = -30426.792052 eV Core-core repulsion = 26423.886517 eV Total energy + Delta-G solvation = -4002.905535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.94664 -41.98875 -40.24004 -38.86154 -35.42025 -34.83034 -34.12201 -32.84843 -31.97698 -30.99591 -28.96934 -28.01806 -27.69035 -25.60428 -25.47025 -23.81840 -22.08564 -21.45087 -21.23067 -20.29204 -18.92595 -18.08855 -17.96699 -17.78433 -17.06441 -16.75717 -16.60450 -16.55195 -15.57354 -15.35688 -15.08923 -14.78064 -14.69557 -14.61826 -14.52074 -14.25165 -14.16301 -14.14121 -13.95027 -13.53454 -13.36077 -13.24550 -13.01054 -12.81955 -12.79772 -12.74342 -12.49453 -12.32716 -12.05713 -11.95082 -11.78329 -11.64304 -11.41541 -11.13201 -10.93956 -10.62108 -9.80651 -9.76219 -9.64950 -8.60779 -7.86418 -5.26463 -0.12958 0.13466 1.48988 1.50983 1.54724 1.58250 2.04073 2.41186 2.51125 3.10452 3.33777 3.40680 3.55007 3.59511 3.66359 4.04600 4.07045 4.12965 4.22212 4.25705 4.33234 4.37873 4.41077 4.47429 4.55343 4.61378 4.66769 4.67664 4.71085 4.77426 4.85671 4.98150 4.99257 5.00732 5.07053 5.11516 5.14211 5.22156 5.25692 5.29412 5.37070 5.44812 5.56459 5.61313 5.78915 5.83229 6.27357 6.53980 7.07544 7.13398 7.72710 8.55416 9.25301 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003939 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.473697 B = 7106.971139 C = 7449.361016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.021 4.021 3 C -0.154 4.154 4 C 0.115 3.885 5 F -0.137 7.137 6 C -0.157 4.157 7 C -0.027 4.027 8 C -0.119 4.119 9 C -0.147 4.147 10 C 0.565 3.435 11 O -0.588 6.588 12 N -0.579 5.579 13 C 0.127 3.873 14 C 0.167 3.833 15 H 0.078 0.922 16 C -0.128 4.128 17 C -0.119 4.119 18 C 0.128 3.872 19 H 0.091 0.909 20 C 0.107 3.893 21 N -0.601 5.601 22 C -0.237 4.237 23 H 0.078 0.922 24 C -0.044 4.044 25 N -0.932 5.932 26 Si 0.967 3.033 27 H -0.290 1.290 28 H -0.300 1.300 29 H -0.271 1.271 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 17.231 4.405 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 C -0.173 4.173 4 C 0.096 3.904 5 F -0.115 7.115 6 C -0.176 4.176 7 C -0.028 4.028 8 C -0.176 4.176 9 C -0.150 4.150 10 C 0.354 3.646 11 O -0.470 6.470 12 N -0.309 5.309 13 C 0.003 3.997 14 C 0.060 3.940 15 H 0.096 0.904 16 C -0.167 4.167 17 C -0.158 4.158 18 C 0.021 3.979 19 H 0.109 0.891 20 C -0.017 4.017 21 N -0.323 5.323 22 C -0.366 4.366 23 H 0.095 0.905 24 C -0.240 4.240 25 N -0.579 5.579 26 Si 0.796 3.204 27 H -0.217 1.217 28 H -0.227 1.227 29 H -0.195 1.195 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.508 16.755 4.811 18.006 hybrid contribution 0.414 -1.323 -0.472 1.464 sum 4.922 15.433 4.339 16.770 Atomic orbital electron populations 1.21100 0.89285 1.04027 1.03968 1.19816 0.97089 0.90388 0.94938 1.21076 0.92037 0.99430 1.04709 1.17866 0.90381 0.81105 1.01063 1.91513 1.80526 1.45806 1.93695 1.21030 1.01938 0.89568 1.05014 1.19776 0.91333 0.96188 0.95481 1.20887 1.00461 0.92530 1.03698 1.19766 0.94045 0.92869 1.08343 1.18504 0.78726 0.84456 0.82937 1.90733 1.53495 1.69718 1.33018 1.48163 1.57911 1.18535 1.06297 1.22102 0.96532 0.82112 0.98933 1.21742 0.90928 0.96558 0.84790 0.90436 1.22784 0.98608 0.96502 0.98797 1.22865 0.96967 0.96836 0.99135 1.22190 0.93222 0.85863 0.96626 0.89110 1.22449 0.98112 0.97756 0.83383 1.45238 1.66715 1.04983 1.15345 1.19223 1.41499 0.88223 0.87634 0.90469 1.25669 1.01212 0.98678 0.98407 1.70007 1.54095 1.11626 1.22122 0.85271 0.77581 0.78058 0.79493 1.21676 1.22669 1.19542 0.89819 0.87601 0.92317 0.81580 0.82052 0.89730 0.88182 0.93947 0.93691 0.92456 0.92630 0.92763 0.89909 0.91109 0.88773 0.93127 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.20 71.23 0.66 -2.01 16 2 C -0.02 -0.50 5.83 -19.62 -0.11 -0.61 16 3 C -0.15 -2.91 9.69 22.28 0.22 -2.69 16 4 C 0.12 2.29 7.31 22.47 0.16 2.45 16 5 F -0.14 -2.69 17.26 44.97 0.78 -1.92 16 6 C -0.16 -3.15 9.68 22.28 0.22 -2.94 16 7 C -0.03 -0.67 5.91 -19.62 -0.12 -0.78 16 8 C -0.12 -2.89 9.69 71.24 0.69 -2.20 16 9 C -0.15 -4.19 3.68 -20.09 -0.07 -4.26 16 10 C 0.56 20.30 3.88 86.75 0.34 20.64 16 11 O -0.59 -25.50 16.57 -3.92 -0.07 -25.57 16 12 N -0.58 -21.48 2.25 -817.61 -1.84 -23.31 16 13 C 0.13 5.69 5.84 86.70 0.51 6.19 16 14 C 0.17 7.58 3.12 45.62 0.14 7.73 16 15 H 0.08 4.12 6.52 -2.39 -0.02 4.11 16 16 C -0.13 -4.71 6.22 32.11 0.20 -4.51 16 17 C -0.12 -3.71 6.31 32.11 0.20 -3.51 16 18 C 0.13 4.58 4.27 45.48 0.19 4.77 16 19 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 20 C 0.11 3.58 5.75 86.56 0.50 4.08 16 21 N -0.60 -27.64 2.80 -635.80 -1.78 -29.43 16 22 C -0.24 -12.11 10.34 84.04 0.87 -11.24 16 23 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 24 C -0.04 -2.34 5.49 84.86 0.47 -1.87 16 25 N -0.93 -51.99 10.25 21.65 0.22 -51.77 16 26 Si 0.97 43.30 29.56 68.60 2.03 45.33 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.11 1.52 8.12 -2.38 -0.02 1.50 16 32 H 0.06 1.51 4.61 -2.39 -0.01 1.50 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.16 2.43 8.06 -2.92 -0.02 2.40 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 1.84 8.12 -2.38 -0.02 1.82 16 37 H 0.04 1.29 6.91 -2.39 -0.02 1.27 16 38 H 0.04 2.32 7.65 -2.39 -0.02 2.30 16 39 H 0.06 2.65 7.08 -2.38 -0.02 2.63 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.97 7.85 -2.39 -0.02 1.95 16 42 H 0.08 2.21 4.88 -2.38 -0.01 2.20 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.60 6.46 -2.39 -0.02 2.58 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -63.42 361.53 5.39 -58.02 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 1.00 Total: 19.41 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.05 Total: 9.24 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -3.40 Total: -104.51 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.57 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.42 5.39 -58.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029417841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.002 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds