Wall clock time and date at job start Sat Apr 11 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37854 * 119.94056 * 2 1 4 4 C 1.39629 * 119.88148 * 180.02562 * 3 2 1 5 5 C 1.47725 * 120.12132 * 179.97438 * 4 3 2 6 6 O 1.21568 * 119.99923 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99872 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99876 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.32293 * 34.99942 * 8 7 5 10 10 C 1.53030 * 109.32584 * 154.64497 * 8 7 5 11 11 C 1.53601 * 109.02367 * 175.65579 * 10 8 7 12 12 H 1.09005 * 113.05135 * 168.01749 * 11 10 8 13 13 C 1.55417 * 106.33031 * 293.72731 * 11 10 8 14 14 C 1.55169 * 100.35602 * 73.36062 * 13 11 10 15 15 H 1.09005 * 113.05478 * 162.97996 * 14 13 11 16 16 C 1.52994 * 109.32383 * 275.35802 * 8 7 5 17 17 N 1.47790 * 104.25191 * 40.55040 * 14 13 11 18 18 C 1.36940 * 125.85995 * 153.54479 * 17 14 13 19 19 H 1.08000 * 119.99393 * 353.88053 * 18 17 14 20 20 C 1.38809 * 120.00113 * 173.88979 * 18 17 14 21 21 N 1.31618 * 120.00233 * 6.77029 * 20 18 17 22 22 Si 1.86802 * 119.99711 * 186.77954 * 20 18 17 23 23 H 1.48492 * 109.47550 * 94.98286 * 22 20 18 24 24 H 1.48501 * 109.46834 * 214.98347 * 22 20 18 25 25 H 1.48504 * 109.47049 * 334.97796 * 22 20 18 26 26 C 1.47080 * 108.28687 * 333.53691 * 17 14 13 27 27 C 1.39676 * 119.76288 * 0.25195 * 4 3 2 28 28 C 1.37818 * 119.87442 * 359.47225 * 27 4 3 29 29 C 1.38634 * 119.93915 * 180.02562 * 2 1 3 30 30 F 1.35102 * 119.88291 * 359.96814 * 29 2 1 31 31 H 1.09003 * 109.47305 * 90.00043 * 1 2 3 32 32 H 1.09002 * 109.47124 * 209.99723 * 1 2 3 33 33 H 1.09004 * 109.47300 * 329.99983 * 1 2 3 34 34 H 1.08005 * 120.05953 * 0.02562 * 3 2 1 35 35 H 0.97003 * 120.00548 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.57484 * 295.30004 * 10 8 7 37 37 H 1.09000 * 109.57946 * 55.69675 * 10 8 7 38 38 H 1.09004 * 111.24037 * 315.58374 * 13 11 10 39 39 H 1.09007 * 111.23485 * 191.13652 * 13 11 10 40 40 H 1.08996 * 109.53358 * 304.70485 * 16 8 7 41 41 H 1.08995 * 109.53195 * 64.93413 * 16 8 7 42 42 H 0.97003 * 119.99911 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.97631 * 120.45929 * 26 17 14 44 44 H 1.09003 * 109.97835 * 241.74512 * 26 17 14 45 45 H 1.07992 * 120.06049 * 179.74978 * 27 4 3 46 46 H 1.08008 * 119.93919 * 180.27488 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1946 0.0000 4 6 3.5913 1.1931 -0.0005 5 6 4.3340 2.4701 -0.0011 6 8 3.7294 3.5248 -0.0006 7 7 5.6817 2.4659 -0.0011 8 6 6.4182 3.7323 -0.0011 9 1 5.8711 4.4676 0.5888 10 6 7.8008 3.5140 0.6173 11 6 8.6065 4.8178 0.5150 12 1 9.5172 4.8048 1.1139 13 6 8.8523 5.0619 -1.0001 14 6 7.4328 5.5024 -1.4456 15 1 7.4259 6.0066 -2.4120 16 6 6.5561 4.2377 -1.4386 17 7 6.9622 6.3756 -0.3501 18 6 6.0432 7.3842 -0.4665 19 1 5.6684 7.6633 -1.4401 20 6 5.5936 8.0477 0.6668 21 7 6.1454 7.8014 1.8361 22 14 4.2050 9.2900 0.5325 23 1 2.9139 8.6248 0.8418 24 1 4.4354 10.3960 1.4962 25 1 4.1619 9.8369 -0.8475 26 6 7.6502 5.9756 0.8869 27 6 4.2834 -0.0201 -0.0064 28 6 3.5856 -1.2085 -0.0006 29 6 2.1989 -1.2013 -0.0005 30 9 1.5197 -2.3693 -0.0004 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6550 2.1299 0.0004 35 1 6.1641 1.6243 -0.0011 36 1 7.6923 3.2378 1.6661 37 1 8.3200 2.7202 0.0803 38 1 9.1571 4.1443 -1.5035 39 1 9.5806 5.8573 -1.1588 40 1 7.0227 3.4674 -2.0525 41 1 5.5701 4.4756 -1.8374 42 1 5.8309 8.2648 2.6281 43 1 8.2197 6.8157 1.2846 44 1 6.9230 5.6358 1.6243 45 1 5.3633 -0.0268 -0.0109 46 1 4.1198 -2.1473 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047135708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:36 Heat of formation + Delta-G solvation = -27.954337 kcal Electronic energy + Delta-G solvation = -28935.346848 eV Core-core repulsion = 24932.791102 eV Total energy + Delta-G solvation = -4002.555746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.21973 -40.38413 -39.42258 -37.98123 -34.63733 -33.33277 -32.69781 -31.10906 -30.67568 -29.49593 -28.27756 -27.14859 -25.28978 -24.04070 -23.10473 -22.49341 -21.49536 -20.05579 -19.41756 -18.74841 -17.90453 -17.32172 -17.03607 -16.60009 -15.99967 -15.66439 -14.98370 -14.73033 -14.47169 -14.37543 -13.99201 -13.72165 -13.61628 -13.55177 -13.47555 -13.06697 -12.76013 -12.72722 -12.22013 -12.16991 -11.91176 -11.80500 -11.72241 -11.54606 -11.29536 -11.22102 -10.71439 -10.64045 -10.52014 -9.94197 -9.92212 -9.73232 -9.66863 -9.47747 -9.30017 -9.24647 -8.92239 -8.56923 -8.48921 -6.74807 -5.63204 -2.94306 0.52252 0.92993 2.77974 3.35654 3.49284 3.55016 3.56115 3.70062 3.89675 4.34876 4.44151 4.59280 4.67380 4.87420 4.94768 5.19422 5.24490 5.25846 5.32968 5.42088 5.45923 5.57948 5.65750 5.68581 5.77017 5.78958 5.89386 5.89971 5.96875 6.04502 6.06759 6.08634 6.10925 6.14533 6.24262 6.52771 6.58207 6.63081 6.68914 6.87588 6.90081 7.00337 7.08629 7.61386 7.66918 7.79551 7.90074 8.33290 8.51377 9.30749 9.91451 10.57592 11.49217 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.003361 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.755220 B = 8328.559244 C = 9802.765292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.126 4.126 3 C -0.035 4.035 4 C -0.131 4.131 5 C 0.548 3.452 6 O -0.515 6.515 7 N -0.721 5.721 8 C 0.146 3.854 9 H 0.117 0.883 10 C -0.112 4.112 11 C -0.119 4.119 12 H 0.082 0.918 13 C -0.128 4.128 14 C 0.157 3.843 15 H 0.065 0.935 16 C -0.136 4.136 17 N -0.595 5.595 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.921 5.921 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.179 3.821 27 C -0.066 4.066 28 C -0.157 4.157 29 C 0.113 3.887 30 F -0.136 7.136 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.389 0.611 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.040 0.960 44 H 0.049 0.951 45 H 0.136 0.864 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -19.841 -3.572 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.127 4.127 3 C -0.054 4.054 4 C -0.134 4.134 5 C 0.334 3.666 6 O -0.391 6.391 7 N -0.372 5.372 8 C 0.044 3.956 9 H 0.135 0.865 10 C -0.150 4.150 11 C -0.138 4.138 12 H 0.101 0.899 13 C -0.166 4.166 14 C 0.049 3.951 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.319 5.319 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.569 5.569 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.054 3.946 27 C -0.085 4.085 28 C -0.176 4.176 29 C 0.093 3.907 30 F -0.115 7.115 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.154 0.846 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.067 -18.911 -3.406 19.327 hybrid contribution -0.601 -0.145 0.010 0.619 sum -2.669 -19.056 -3.396 19.539 Atomic orbital electron populations 1.20751 0.89659 1.03627 1.03081 1.19920 0.97435 0.91523 1.03837 1.21122 0.92775 0.97927 0.93579 1.20224 0.94400 0.93659 1.05110 1.18108 0.82605 0.88381 0.77507 1.90897 1.68098 1.31983 1.48095 1.46146 1.05847 1.10140 1.75065 1.21243 0.92017 0.84257 0.98119 0.86499 1.21899 0.95025 0.97987 1.00060 1.22764 0.98542 0.96069 0.96472 0.89945 1.22977 0.97918 0.99815 0.95889 1.21516 0.90880 0.89723 0.93020 0.91705 1.22616 1.01353 0.98406 0.95316 1.44610 1.47666 1.36281 1.03391 1.19008 1.14427 1.08477 0.93153 0.90612 1.24736 0.99577 1.00287 0.95421 1.69951 1.43004 1.45593 0.98306 0.86174 0.82724 0.80390 0.76958 1.21592 1.21979 1.20751 1.21329 0.92177 0.92153 0.88904 1.21156 1.00126 0.90791 0.96454 1.21028 0.92076 0.99770 1.04698 1.17760 0.90014 0.80936 1.01984 1.91488 1.80202 1.46150 1.93635 0.90576 0.91101 0.90486 0.83474 0.77711 0.92155 0.92802 0.92224 0.91883 0.93847 0.92186 0.93931 0.94136 0.93250 0.84618 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.83 36.01 0.35 -0.63 16 2 C -0.13 -1.36 5.88 -104.62 -0.62 -1.98 16 3 C -0.04 -0.44 9.24 -39.20 -0.36 -0.81 16 4 C -0.13 -1.70 5.87 -104.96 -0.62 -2.32 16 5 C 0.55 9.22 7.73 -12.39 -0.10 9.12 16 6 O -0.52 -11.36 16.00 5.31 0.08 -11.27 16 7 N -0.72 -10.71 5.02 -54.78 -0.27 -10.98 16 8 C 0.15 2.66 2.08 -67.92 -0.14 2.51 16 9 H 0.12 2.82 5.39 -51.93 -0.28 2.54 16 10 C -0.11 -1.72 4.92 -26.40 -0.13 -1.85 16 11 C -0.12 -2.09 4.33 -88.13 -0.38 -2.47 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 13 C -0.13 -2.14 6.18 -24.30 -0.15 -2.29 16 14 C 0.16 3.16 4.30 -65.62 -0.28 2.88 16 15 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -2.51 5.27 -26.28 -0.14 -2.65 16 17 N -0.60 -14.84 2.43 -161.37 -0.39 -15.23 16 18 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 19 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 20 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 21 N -0.92 -27.39 10.40 55.49 0.58 -26.81 16 22 Si 0.91 23.07 29.56 -169.99 -5.02 18.04 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.18 4.22 4.10 -2.83 -0.01 4.21 16 27 C -0.07 -0.65 9.54 -39.20 -0.37 -1.02 16 28 C -0.16 -1.43 10.01 -39.57 -0.40 -1.83 16 29 C 0.11 1.17 7.25 -39.27 -0.28 0.89 16 30 F -0.14 -1.42 16.46 2.25 0.04 -1.39 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.56 7.63 -51.93 -0.40 0.16 16 33 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.15 1.94 7.65 -52.48 -0.40 1.54 16 35 H 0.39 4.21 6.63 -40.82 -0.27 3.94 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 38 H 0.06 0.84 7.74 -51.93 -0.40 0.44 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 44 H 0.05 1.31 6.02 -51.93 -0.31 1.00 16 45 H 0.14 0.96 6.40 -52.49 -0.34 0.62 16 46 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -33.13 365.60 -9.90 -43.04 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.55 Total: 3.97 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.88 Total: -4.87 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.09 Total: -53.03 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.13 -9.90 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047135708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.083 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds