Wall clock time and date at job start Sat Apr 11 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37896 * 120.06660 * 2 1 4 4 C 1.38413 * 120.21937 * 180.27971 * 3 2 1 5 5 C 1.38244 * 120.33766 * 359.74744 * 4 3 2 6 6 C 1.38278 * 120.12231 * 359.97371 * 5 4 3 7 7 F 1.35098 * 120.11643 * 180.02562 * 6 5 4 8 8 C 1.39623 * 120.05564 * 179.74638 * 2 1 3 9 9 C 1.47694 * 120.17079 * 0.02562 * 8 2 1 10 10 O 1.21572 * 119.99401 * 269.72153 * 9 8 2 11 11 N 1.34769 * 120.00253 * 89.71358 * 9 8 2 12 12 C 1.46505 * 120.00032 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47287 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47246 * 179.97438 * 13 12 11 15 15 C 1.29452 * 117.69502 * 95.00234 * 14 13 12 16 16 C 1.50324 * 123.65304 * 180.57901 * 15 14 13 17 17 N 1.47010 * 109.16448 * 349.27777 * 16 15 14 18 18 C 1.36936 * 121.37191 * 222.96712 * 17 16 15 19 19 H 1.08000 * 119.99620 * 155.97016 * 18 17 16 20 20 C 1.38810 * 120.00410 * 335.97307 * 18 17 16 21 21 N 1.31617 * 119.99875 * 344.52041 * 20 18 17 22 22 Si 1.86807 * 119.99988 * 164.51574 * 20 18 17 23 23 H 1.48498 * 109.46876 * 90.00079 * 22 20 18 24 24 H 1.48495 * 109.46847 * 210.00217 * 22 20 18 25 25 H 1.48494 * 109.47077 * 330.00263 * 22 20 18 26 26 C 1.47340 * 117.24864 * 42.94958 * 17 16 15 27 27 C 1.49964 * 117.69115 * 275.22019 * 14 13 12 28 28 H 1.09004 * 109.47185 * 270.25285 * 1 2 3 29 29 H 1.08999 * 109.47188 * 30.25043 * 1 2 3 30 30 H 1.08994 * 109.47846 * 150.25499 * 1 2 3 31 31 H 1.08008 * 119.88624 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.82968 * 179.71964 * 4 3 2 33 33 H 1.07999 * 119.94035 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00327 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.47076 * 60.00269 * 12 11 9 36 36 H 1.09000 * 109.47024 * 300.00310 * 12 11 9 37 37 H 1.08999 * 109.47059 * 59.99994 * 13 12 11 38 38 H 1.09000 * 109.47126 * 299.99983 * 13 12 11 39 39 H 1.08003 * 118.17223 * 0.85562 * 15 14 13 40 40 H 1.08995 * 109.52197 * 109.18684 * 16 15 14 41 41 H 1.08999 * 109.51994 * 229.37111 * 16 15 14 42 42 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.77806 * 57.81155 * 26 17 16 44 44 H 1.09002 * 109.77678 * 178.61833 * 26 17 16 45 45 H 1.09003 * 109.43742 * 40.82300 * 27 14 13 46 46 H 1.09001 * 109.13695 * 281.43060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1934 0.0000 4 6 3.5820 1.1971 -0.0058 5 6 4.2834 0.0059 -0.0065 6 6 3.6049 -1.1990 -0.0007 7 9 4.2905 -2.3631 -0.0008 8 6 2.2063 -1.2085 0.0053 9 6 1.4729 -2.4904 0.0105 10 8 1.1751 -3.0161 1.0655 11 7 1.1336 -3.0774 -1.1543 12 6 0.4056 -4.3487 -1.1492 13 6 0.1473 -4.7943 -2.5898 14 6 -0.6010 -6.1024 -2.5845 15 6 -1.8912 -6.0579 -2.6800 16 6 -2.7695 -7.2778 -2.6755 17 7 -1.9300 -8.4774 -2.8076 18 6 -2.2855 -9.5087 -3.6354 19 1 -1.5292 -10.1750 -4.0233 20 6 -3.6178 -9.6976 -3.9762 21 7 -4.5649 -9.0996 -3.2850 22 14 -4.0664 -10.8004 -5.4157 23 1 -4.2500 -12.1930 -4.9338 24 1 -5.3285 -10.3197 -6.0329 25 1 -2.9773 -10.7652 -6.4244 26 6 -0.6901 -8.5240 -2.0130 27 6 0.2012 -7.3637 -2.4640 28 1 -0.3634 0.0045 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6570 2.1283 0.0004 32 1 4.1167 2.1355 -0.0104 33 1 5.3633 0.0162 -0.0114 34 1 1.3714 -2.6581 -1.9961 35 1 -0.5453 -4.2208 -0.6320 36 1 0.9993 -5.1053 -0.6361 37 1 1.0984 -4.9224 -3.1066 38 1 -0.4462 -4.0379 -3.1032 39 1 -2.3626 -5.0905 -2.7724 40 1 -3.3249 -7.3233 -1.7387 41 1 -3.4671 -7.2275 -3.5115 42 1 -5.4960 -9.2320 -3.5229 43 1 -0.9264 -8.4176 -0.9542 44 1 -0.1778 -9.4708 -2.1840 45 1 0.9991 -7.2179 -1.7358 46 1 0.6403 -7.6019 -3.4328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162003147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:25 Heat of formation + Delta-G solvation = -26.860192 kcal Electronic energy + Delta-G solvation = -27500.217686 eV Core-core repulsion = 23497.709386 eV Total energy + Delta-G solvation = -4002.508300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.30949 -40.46129 -38.80161 -37.85029 -35.45061 -33.64373 -33.23657 -31.65254 -31.08290 -29.81885 -28.68112 -27.63668 -25.54023 -24.12054 -22.93157 -22.44350 -22.19925 -21.02182 -20.65078 -18.19646 -17.59166 -17.38305 -17.08244 -16.54564 -15.94142 -15.64527 -15.47955 -15.30864 -14.94085 -14.38070 -14.16710 -14.02226 -13.91390 -13.79520 -13.66313 -13.53438 -13.26613 -12.68359 -12.62176 -12.28638 -12.24947 -12.18557 -12.00049 -11.77043 -11.56392 -11.41391 -11.00816 -10.90332 -10.70728 -10.36602 -10.29395 -10.10970 -9.79580 -9.53663 -9.40483 -9.21556 -9.15212 -8.63957 -7.91231 -6.70533 -5.77073 -3.15499 0.49123 0.66533 2.31296 2.75553 2.97622 3.13621 3.38893 3.45460 3.47908 3.69060 4.18755 4.27797 4.41057 4.51258 4.67293 4.72225 5.03708 5.09935 5.11211 5.19724 5.21362 5.27711 5.41468 5.44997 5.51609 5.56884 5.64673 5.69343 5.76143 5.79649 5.90424 6.00457 6.04135 6.15473 6.22541 6.28194 6.32462 6.42026 6.57289 6.81086 6.92825 7.23432 7.25610 7.34865 7.42535 7.76857 7.89667 7.95097 8.41105 9.22542 9.85485 10.44257 11.33395 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.002051 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.508553 B =13647.756680 C =14112.480353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.162 4.162 6 C 0.136 3.864 7 F -0.129 7.129 8 C -0.162 4.162 9 C 0.564 3.436 10 O -0.523 6.523 11 N -0.719 5.719 12 C 0.123 3.877 13 C -0.091 4.091 14 C -0.142 4.142 15 C -0.146 4.146 16 C 0.197 3.803 17 N -0.596 5.596 18 C -0.244 4.244 19 H 0.068 0.932 20 C -0.003 4.003 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.143 3.857 27 C -0.092 4.092 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.349 24.048 4.308 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.021 4.021 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.181 4.181 6 C 0.116 3.884 7 F -0.108 7.108 8 C -0.166 4.166 9 C 0.348 3.652 10 O -0.399 6.399 11 N -0.370 5.370 12 C 0.000 4.000 13 C -0.129 4.129 14 C -0.143 4.143 15 C -0.166 4.166 16 C 0.072 3.928 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.016 3.984 27 C -0.131 4.131 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.951 23.546 5.032 28.342 hybrid contribution 0.028 -0.465 -1.132 1.224 sum 14.978 23.082 3.900 27.791 Atomic orbital electron populations 1.20946 0.89790 1.03709 1.03691 1.19825 0.96595 0.90789 0.94928 1.21070 0.94237 0.97648 1.02224 1.21152 0.94078 0.97710 0.96058 1.21106 1.01219 0.90811 1.04964 1.17650 0.88286 0.82025 1.00479 1.91558 1.79303 1.46489 1.93403 1.19897 0.92284 0.94889 1.09543 1.17980 0.79062 0.83776 0.84398 1.90846 1.53835 1.64234 1.30950 1.46133 1.58190 1.24566 1.08110 1.21524 0.96655 0.83747 0.98077 1.20908 1.00802 0.96559 0.94639 1.20211 0.94628 0.93555 1.05866 1.23123 0.95521 1.00395 0.97544 1.19703 0.90920 0.81219 1.00998 1.44135 1.22010 1.16720 1.49036 1.19170 0.91232 1.06820 1.20140 0.91440 1.24991 0.95842 0.99542 0.99671 1.70019 0.99197 1.47014 1.39268 0.86263 0.77612 0.80185 0.82543 1.21451 1.21592 1.20584 1.20954 0.88266 0.95382 0.93752 1.20765 0.97407 0.94383 1.00523 0.89847 0.90292 0.90953 0.84596 0.84471 0.84099 0.76494 0.90985 0.91009 0.91387 0.91464 0.89074 0.94430 0.89146 0.93654 0.95846 0.92528 0.92837 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.62 36.00 0.35 -0.58 16 2 C -0.02 -0.17 5.91 -104.23 -0.62 -0.79 16 3 C -0.13 -0.81 9.68 -39.64 -0.38 -1.20 16 4 C -0.07 -0.40 10.03 -39.51 -0.40 -0.79 16 5 C -0.16 -1.17 10.01 -39.56 -0.40 -1.57 16 6 C 0.14 1.40 7.29 -38.96 -0.28 1.11 16 7 F -0.13 -1.56 16.83 2.25 0.04 -1.52 16 8 C -0.16 -1.75 5.64 -104.91 -0.59 -2.34 16 9 C 0.56 7.53 5.36 -12.40 -0.07 7.46 16 10 O -0.52 -9.18 17.11 5.30 0.09 -9.09 16 11 N -0.72 -8.19 5.55 -61.30 -0.34 -8.53 16 12 C 0.12 1.62 5.66 -4.04 -0.02 1.59 16 13 C -0.09 -1.19 5.32 -27.89 -0.15 -1.34 16 14 C -0.14 -2.45 5.11 -100.99 -0.52 -2.97 16 15 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 16 C 0.20 4.76 5.23 -5.10 -0.03 4.74 16 17 N -0.60 -15.24 3.01 -173.67 -0.52 -15.76 16 18 C -0.24 -6.78 9.71 -15.06 -0.15 -6.93 16 19 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 20 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 21 N -0.91 -26.51 11.08 55.49 0.61 -25.90 16 22 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.14 3.07 6.58 -3.53 -0.02 3.04 16 27 C -0.09 -1.65 5.94 -28.18 -0.17 -1.81 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.62 7.08 -51.93 -0.37 0.25 16 31 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 32 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.40 3.50 8.46 -40.82 -0.35 3.15 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.07 0.80 7.78 -51.93 -0.40 0.39 16 39 H 0.09 1.55 7.73 -52.48 -0.41 1.14 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 45 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -33.30 384.89 -10.09 -43.39 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.88 Total: 0.48 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.87 Total: -5.71 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.25 Total: -50.19 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.30 -10.09 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162003147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.533 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds