Wall clock time and date at job start Sat Apr 11 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48507 * 109.47075 * 270.00342 * 3 2 1 5 5 H 1.48502 * 109.47104 * 30.00211 * 3 2 1 6 6 H 1.48497 * 109.47178 * 150.00373 * 3 2 1 7 7 C 1.37875 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00002 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47287 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47186 * 184.99688 * 10 9 7 12 12 C 1.44343 * 111.00114 * 301.91376 * 11 10 9 13 13 C 1.53858 * 112.26038 * 215.82898 * 12 11 10 14 14 O 1.44166 * 112.87479 * 318.38309 * 13 12 11 15 15 C 1.40365 * 117.14406 * 317.93088 * 14 13 12 16 16 C 1.54245 * 108.72621 * 92.92869 * 15 14 13 17 17 C 1.54485 * 108.50096 * 157.93154 * 16 15 14 18 18 C 1.51313 * 104.17005 * 270.12118 * 17 16 15 19 19 O 1.21283 * 124.93440 * 163.86610 * 18 17 16 20 20 N 1.34632 * 110.16254 * 343.88901 * 18 17 16 21 21 C 1.46504 * 124.46145 * 179.67714 * 20 18 17 22 22 C 1.52992 * 109.47039 * 269.97482 * 21 20 18 23 23 F 1.39896 * 109.47377 * 299.99948 * 22 21 20 24 24 F 1.39901 * 109.47355 * 60.00035 * 22 21 20 25 25 C 1.46777 * 111.19248 * 359.65278 * 20 18 17 26 26 C 1.46523 * 111.91947 * 282.91418 * 16 15 14 27 27 H 0.97001 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47386 * 59.99575 * 9 7 2 29 29 H 1.09007 * 109.47131 * 299.99833 * 9 7 2 30 30 H 1.08997 * 109.47224 * 64.99731 * 10 9 7 31 31 H 1.09002 * 109.46768 * 304.99868 * 10 9 7 32 32 H 1.09004 * 108.92380 * 336.54273 * 12 11 10 33 33 H 1.09006 * 108.92594 * 95.11007 * 12 11 10 34 34 H 1.08997 * 108.80254 * 79.25552 * 13 12 11 35 35 H 1.08994 * 108.80133 * 197.50995 * 13 12 11 36 36 H 1.09001 * 109.59457 * 333.14887 * 15 14 13 37 37 H 1.09007 * 109.59322 * 212.70007 * 15 14 13 38 38 H 1.08998 * 110.49156 * 28.79289 * 17 16 15 39 39 H 1.09005 * 110.49044 * 151.45594 * 17 16 15 40 40 H 1.09004 * 109.47176 * 29.98087 * 21 20 18 41 41 H 1.08997 * 109.46592 * 149.97442 * 21 20 18 42 42 H 1.09004 * 109.47232 * 180.02562 * 22 21 20 43 43 H 1.09001 * 110.25054 * 257.73666 * 25 20 18 44 44 H 1.09004 * 110.24313 * 135.82266 * 25 20 18 45 45 H 1.08994 * 108.92929 * 181.51453 * 26 16 15 46 46 H 1.09004 * 108.92869 * 300.19028 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4856 -2.6385 0.1178 12 6 6.0938 -1.8931 -0.9583 13 6 7.4220 -2.5166 -1.4213 14 8 8.2406 -2.9700 -0.3247 15 6 8.3237 -2.1349 0.8005 16 6 7.2430 -2.5618 1.8149 17 6 7.6632 -2.0662 3.2165 18 6 8.4815 -3.2061 3.7826 19 8 9.2236 -3.1208 4.7381 20 7 8.2670 -4.3291 3.0716 21 6 8.9066 -5.6184 3.3454 22 6 10.2145 -5.7163 2.5578 23 9 9.9439 -5.6112 1.1893 24 9 11.0706 -4.6796 2.9447 25 6 7.3077 -4.0946 1.9857 26 6 5.9109 -2.0925 1.4250 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6800 -0.8912 30 1 3.7328 -3.1233 -0.9338 31 1 3.5872 -3.1762 0.8394 32 1 5.4041 -1.8635 -1.8019 33 1 6.2806 -0.8735 -0.6208 34 1 7.2044 -3.3643 -2.0711 35 1 7.9790 -1.7734 -1.9916 36 1 8.1557 -1.1003 0.5010 37 1 9.3099 -2.2307 1.2548 38 1 8.2698 -1.1642 3.1362 39 1 6.7850 -1.8828 3.8355 40 1 9.1174 -5.7003 4.4117 41 1 8.2396 -6.4261 3.0439 42 1 10.6902 -6.6757 2.7610 43 1 6.3272 -4.4856 2.2575 44 1 7.6580 -4.5622 1.0655 45 1 5.1922 -2.3966 2.1859 46 1 5.9229 -1.0042 1.3652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:27 Heat of formation + Delta-G solvation = -166.361425 kcal Electronic energy + Delta-G solvation = -31026.119322 eV Core-core repulsion = 26586.792569 eV Total energy + Delta-G solvation = -4439.326753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.01786 -47.03187 -41.18361 -39.09532 -36.65043 -36.40673 -34.38025 -32.95013 -30.51536 -30.39852 -28.68859 -27.38951 -26.50174 -25.71747 -23.92208 -23.20077 -21.74578 -20.15368 -19.82812 -19.30229 -17.90581 -17.42034 -17.17508 -16.91675 -16.62595 -16.32156 -15.85112 -15.80563 -15.26966 -14.94257 -14.47560 -14.31067 -14.02722 -13.99666 -13.83222 -13.59966 -13.38801 -13.28216 -13.11001 -12.75796 -12.68582 -12.58859 -12.37459 -12.17428 -11.91487 -11.63294 -11.56207 -11.28077 -11.06176 -11.01869 -10.84724 -10.54324 -10.44398 -10.04291 -9.96917 -9.80818 -9.39830 -9.34254 -8.86694 -8.65210 -7.89499 -6.15488 -4.14568 2.43190 2.71830 3.19731 3.28562 3.28977 3.61882 3.66302 4.02143 4.10615 4.15310 4.33521 4.37499 4.47532 4.55736 4.65851 4.78991 5.05085 5.09192 5.12740 5.17717 5.18080 5.31959 5.35649 5.44513 5.56210 5.57090 5.63175 5.72199 5.79843 5.84604 5.95547 6.04845 6.09606 6.11880 6.31880 6.35070 6.55391 6.91611 6.98954 7.06521 7.30079 7.40857 7.50315 7.72950 8.02927 8.40825 8.89143 9.46598 10.97785 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.003315 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.012092 B = 8444.905087 C = 8865.245211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.045 4.045 10 C 0.069 3.931 11 N -0.529 5.529 12 C 0.020 3.980 13 C 0.071 3.929 14 O -0.370 6.370 15 C 0.083 3.917 16 C -0.091 4.091 17 C -0.145 4.145 18 C 0.523 3.477 19 O -0.529 6.529 20 N -0.619 5.619 21 C 0.080 3.920 22 C 0.242 3.758 23 F -0.196 7.196 24 F -0.200 7.200 25 C 0.125 3.875 26 C 0.068 3.932 27 H 0.264 0.736 28 H 0.015 0.985 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.537 -10.331 3.121 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.083 4.083 10 C -0.057 4.057 11 N -0.251 5.251 12 C -0.109 4.109 13 C -0.006 4.006 14 O -0.288 6.288 15 C 0.005 3.995 16 C -0.093 4.093 17 C -0.185 4.185 18 C 0.311 3.689 19 O -0.405 6.405 20 N -0.354 5.354 21 C -0.045 4.045 22 C 0.187 3.813 23 F -0.177 7.177 24 F -0.181 7.181 25 C 0.003 3.997 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.051 -10.875 3.557 23.086 hybrid contribution -0.207 2.197 -0.109 2.209 sum 19.844 -8.678 3.448 21.932 Atomic orbital electron populations 1.69905 1.06285 1.26976 1.50704 1.25029 0.94700 0.99109 0.94478 0.86795 0.80220 0.83841 0.78456 1.20323 1.21278 1.19351 1.21017 0.89159 0.94542 1.51218 0.90851 1.20194 0.98111 0.93796 0.96220 1.22297 0.82857 0.98432 1.02128 1.61599 1.09862 1.53029 1.00642 1.22456 0.96455 0.95439 0.96592 1.23109 0.89787 0.99662 0.88046 1.87426 1.67951 1.47462 1.25958 1.22333 0.97057 0.93858 0.86227 1.21058 0.97686 0.95849 0.94665 1.22390 1.01646 0.98024 0.96490 1.20958 0.81170 0.84709 0.82033 1.90717 1.38333 1.84124 1.27358 1.48266 1.44902 1.08959 1.33233 1.22462 0.92857 0.87285 1.01848 1.22486 0.90902 0.90238 0.77678 1.93038 1.94482 1.97016 1.33197 1.93024 1.72083 1.62257 1.90724 1.22177 0.91853 0.95451 0.90195 1.20915 0.94127 0.97894 0.93030 0.92632 0.96641 0.97139 0.91077 0.91035 0.89748 0.94305 0.89218 0.93416 0.92959 0.90134 0.87812 0.87186 0.87331 0.87208 0.86939 0.90777 0.87747 0.90213 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.01 9.66 -34.44 -0.33 -14.35 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.04 -0.97 3.50 -27.88 -0.10 -1.06 16 10 C 0.07 1.22 5.00 -3.82 -0.02 1.20 16 11 N -0.53 -7.68 4.40 -239.17 -1.05 -8.73 16 12 C 0.02 0.27 4.00 -4.74 -0.02 0.26 16 13 C 0.07 0.83 7.02 37.60 0.26 1.10 16 14 O -0.37 -4.77 8.68 -33.78 -0.29 -5.06 16 15 C 0.08 0.99 5.17 37.81 0.20 1.18 16 16 C -0.09 -1.05 0.64 -155.45 -0.10 -1.15 16 17 C -0.14 -1.61 5.79 -26.80 -0.16 -1.76 16 18 C 0.52 6.85 7.59 -10.75 -0.08 6.76 16 19 O -0.53 -8.63 17.60 5.55 0.10 -8.54 16 20 N -0.62 -6.87 2.81 -172.40 -0.48 -7.36 16 21 C 0.08 0.65 6.18 -4.04 -0.03 0.63 16 22 C 0.24 2.11 5.60 37.15 0.21 2.31 16 23 F -0.20 -2.19 16.55 2.25 0.04 -2.15 16 24 F -0.20 -2.49 16.98 2.25 0.04 -2.45 16 25 C 0.12 1.40 5.99 -3.18 -0.02 1.38 16 26 C 0.07 0.92 2.82 -6.35 -0.02 0.90 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.34 5.90 -51.93 -0.31 0.03 16 29 H 0.01 0.23 6.46 -51.92 -0.34 -0.11 16 30 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.08 1.19 7.08 -51.93 -0.37 0.83 16 33 H 0.04 0.55 6.73 -51.93 -0.35 0.20 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.60 7.16 -51.93 -0.37 0.22 16 37 H 0.08 0.98 7.83 -51.92 -0.41 0.58 16 38 H 0.10 1.07 7.86 -51.93 -0.41 0.66 16 39 H 0.11 1.13 7.94 -51.93 -0.41 0.72 16 40 H 0.11 0.85 7.93 -51.93 -0.41 0.43 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 44 H 0.10 1.29 5.99 -51.93 -0.31 0.98 16 45 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 46 H 0.05 0.68 6.81 -51.93 -0.35 0.32 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -33.07 361.86 -7.35 -40.42 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.95 Total: -0.95 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.30 Total: -0.78 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.76 Total: -42.27 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.20 Total: -13.60 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.07 -7.35 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.938 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds