Wall clock time and date at job start Sat Apr 11 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48507 * 109.47075 * 270.00342 * 3 2 1 5 5 H 1.48502 * 109.47104 * 30.00211 * 3 2 1 6 6 H 1.48497 * 109.47178 * 150.00373 * 3 2 1 7 7 C 1.37875 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00002 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47287 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47186 * 184.99688 * 10 9 7 12 12 C 1.44343 * 111.00114 * 301.91376 * 11 10 9 13 13 C 1.53858 * 112.26038 * 215.82898 * 12 11 10 14 14 O 1.44166 * 112.87479 * 318.38309 * 13 12 11 15 15 C 1.40365 * 117.14406 * 317.93088 * 14 13 12 16 16 C 1.54245 * 108.72621 * 92.92869 * 15 14 13 17 17 C 1.54485 * 108.50096 * 157.93154 * 16 15 14 18 18 C 1.51313 * 104.17005 * 270.12118 * 17 16 15 19 19 O 1.21283 * 124.93440 * 163.86610 * 18 17 16 20 20 N 1.34632 * 110.16254 * 343.88901 * 18 17 16 21 21 C 1.46504 * 124.46145 * 179.67714 * 20 18 17 22 22 C 1.52992 * 109.47039 * 269.97482 * 21 20 18 23 23 F 1.39896 * 109.47377 * 299.99948 * 22 21 20 24 24 F 1.39901 * 109.47355 * 60.00035 * 22 21 20 25 25 C 1.46777 * 111.19248 * 359.65278 * 20 18 17 26 26 C 1.46523 * 111.91947 * 282.91418 * 16 15 14 27 27 H 0.97001 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47386 * 59.99575 * 9 7 2 29 29 H 1.09007 * 109.47131 * 299.99833 * 9 7 2 30 30 H 1.08997 * 109.47224 * 64.99731 * 10 9 7 31 31 H 1.09002 * 109.46768 * 304.99868 * 10 9 7 32 32 H 1.09004 * 108.92380 * 336.54273 * 12 11 10 33 33 H 1.09006 * 108.92594 * 95.11007 * 12 11 10 34 34 H 1.08997 * 108.80254 * 79.25552 * 13 12 11 35 35 H 1.08994 * 108.80133 * 197.50995 * 13 12 11 36 36 H 1.09001 * 109.59457 * 333.14887 * 15 14 13 37 37 H 1.09007 * 109.59322 * 212.70007 * 15 14 13 38 38 H 1.08998 * 110.49156 * 28.79289 * 17 16 15 39 39 H 1.09005 * 110.49044 * 151.45594 * 17 16 15 40 40 H 1.09004 * 109.47176 * 29.98087 * 21 20 18 41 41 H 1.08997 * 109.46592 * 149.97442 * 21 20 18 42 42 H 1.09004 * 109.47232 * 180.02562 * 22 21 20 43 43 H 1.09001 * 110.25054 * 257.73666 * 25 20 18 44 44 H 1.09004 * 110.24313 * 135.82266 * 25 20 18 45 45 H 1.08994 * 108.92929 * 181.51453 * 26 16 15 46 46 H 1.09004 * 108.92869 * 300.19028 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4856 -2.6385 0.1178 12 6 6.0938 -1.8931 -0.9583 13 6 7.4220 -2.5166 -1.4213 14 8 8.2406 -2.9700 -0.3247 15 6 8.3237 -2.1349 0.8005 16 6 7.2430 -2.5618 1.8149 17 6 7.6632 -2.0662 3.2165 18 6 8.4815 -3.2061 3.7826 19 8 9.2236 -3.1208 4.7381 20 7 8.2670 -4.3291 3.0716 21 6 8.9066 -5.6184 3.3454 22 6 10.2145 -5.7163 2.5578 23 9 9.9439 -5.6112 1.1893 24 9 11.0706 -4.6796 2.9447 25 6 7.3077 -4.0946 1.9857 26 6 5.9109 -2.0925 1.4250 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6800 -0.8912 30 1 3.7328 -3.1233 -0.9338 31 1 3.5872 -3.1762 0.8394 32 1 5.4041 -1.8635 -1.8019 33 1 6.2806 -0.8735 -0.6208 34 1 7.2044 -3.3643 -2.0711 35 1 7.9790 -1.7734 -1.9916 36 1 8.1557 -1.1003 0.5010 37 1 9.3099 -2.2307 1.2548 38 1 8.2698 -1.1642 3.1362 39 1 6.7850 -1.8828 3.8355 40 1 9.1174 -5.7003 4.4117 41 1 8.2396 -6.4261 3.0439 42 1 10.6902 -6.6757 2.7610 43 1 6.3272 -4.4856 2.2575 44 1 7.6580 -4.5622 1.0655 45 1 5.1922 -2.3966 2.1859 46 1 5.9229 -1.0042 1.3652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:26 Heat of formation + Delta-G solvation = -189.316614 kcal Electronic energy + Delta-G solvation = -31027.114734 eV Core-core repulsion = 26586.792569 eV Total energy + Delta-G solvation = -4440.322164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.79189 -47.83065 -42.15931 -40.15992 -37.86128 -37.41854 -35.34699 -34.84761 -32.15316 -31.26389 -29.70917 -28.57886 -27.50994 -26.82479 -25.30880 -24.02269 -23.20642 -21.20996 -20.89323 -20.39415 -19.06024 -18.65415 -18.19680 -17.91004 -17.63837 -17.22633 -16.95503 -16.70539 -16.36724 -16.22148 -15.93009 -15.44171 -15.27290 -15.01829 -14.83559 -14.77050 -14.64795 -14.29644 -14.20604 -14.08116 -13.78040 -13.56109 -13.36276 -13.22465 -13.14734 -12.88131 -12.72195 -12.48356 -12.26467 -12.15289 -12.05953 -11.91987 -11.77026 -11.64606 -11.37892 -11.36234 -10.89945 -10.76807 -10.35769 -9.75611 -9.16624 -8.30334 -6.34089 1.32353 1.34294 1.44312 1.46039 1.89944 2.32871 2.62743 3.00637 3.05272 3.12152 3.29847 3.43171 3.48262 3.64474 3.69167 3.82685 3.96024 4.06883 4.12235 4.27716 4.36636 4.44326 4.46444 4.49824 4.53921 4.57695 4.67438 4.72401 4.73706 4.79438 4.81215 4.87842 4.94457 5.01106 5.10298 5.17314 5.38449 5.43928 5.48950 5.57352 5.99555 6.05558 6.22226 6.32976 6.49825 6.75973 7.06828 7.30713 8.86213 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.003315 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.012092 B = 8444.905087 C = 8865.245211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.526 4.526 8 H 0.036 0.964 9 C -0.036 4.036 10 C 0.083 3.917 11 N -0.521 5.521 12 C 0.017 3.983 13 C 0.076 3.924 14 O -0.381 6.381 15 C 0.086 3.914 16 C -0.085 4.085 17 C -0.141 4.141 18 C 0.517 3.483 19 O -0.567 6.567 20 N -0.617 5.617 21 C 0.072 3.928 22 C 0.233 3.767 23 F -0.211 7.211 24 F -0.224 7.224 25 C 0.132 3.868 26 C 0.071 3.929 27 H 0.265 0.735 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.482 -10.400 2.945 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.171 1.171 7 C -0.565 4.565 8 H 0.055 0.945 9 C -0.075 4.075 10 C -0.045 4.045 11 N -0.243 5.243 12 C -0.112 4.112 13 C -0.001 4.001 14 O -0.299 6.299 15 C 0.008 3.992 16 C -0.086 4.086 17 C -0.181 4.181 18 C 0.307 3.693 19 O -0.447 6.447 20 N -0.349 5.349 21 C -0.051 4.051 22 C 0.179 3.821 23 F -0.193 7.193 24 F -0.206 7.206 25 C 0.010 3.990 26 C -0.057 4.057 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 22.020 -10.979 3.359 24.833 hybrid contribution -0.856 2.103 -0.076 2.272 sum 21.164 -8.876 3.283 23.183 Atomic orbital electron populations 1.70064 1.08290 1.28032 1.52748 1.25970 0.95485 1.03298 0.94342 0.85718 0.79480 0.78752 0.79015 1.19374 1.21378 1.17140 1.21401 0.91990 0.93089 1.49971 0.94546 1.20118 0.94460 0.96637 0.96315 1.22032 0.84877 0.95683 1.01859 1.61626 1.07567 1.53450 1.01644 1.22543 0.97286 0.95439 0.95952 1.23117 0.88731 1.00402 0.87818 1.87420 1.68114 1.47963 1.26404 1.22314 0.96809 0.94104 0.86001 1.20913 0.96611 0.96195 0.94886 1.22397 1.01871 0.97837 0.96016 1.21223 0.80814 0.85638 0.81669 1.90695 1.40086 1.84806 1.29092 1.48365 1.44459 1.09632 1.32477 1.22794 0.93250 0.86784 1.02298 1.23045 0.91062 0.91318 0.76672 1.93004 1.94605 1.97132 1.34519 1.92976 1.72930 1.63742 1.90909 1.22079 0.91988 0.95053 0.89888 1.20923 0.94961 0.97548 0.92294 0.92604 0.96347 0.96585 0.91328 0.91525 0.90234 0.94503 0.88462 0.91638 0.92276 0.90566 0.86922 0.86258 0.86861 0.84167 0.82251 0.90394 0.88427 0.90443 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 13.96 21.45 0.30 -57.87 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.53 -28.57 9.66 25.60 0.25 -28.32 16 8 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.04 -1.53 3.50 29.85 0.10 -1.43 16 10 C 0.08 2.84 5.00 86.30 0.43 3.27 16 11 N -0.52 -14.14 4.40 -910.59 -4.01 -18.15 16 12 C 0.02 0.43 4.00 87.07 0.35 0.78 16 13 C 0.08 1.58 7.02 72.27 0.51 2.09 16 14 O -0.38 -8.94 8.68 -143.78 -1.25 -10.19 16 15 C 0.09 1.85 5.17 72.40 0.37 2.23 16 16 C -0.08 -1.79 0.64 -52.79 -0.03 -1.83 16 17 C -0.14 -2.90 5.79 30.55 0.18 -2.72 16 18 C 0.52 12.96 7.59 87.87 0.67 13.63 16 19 O -0.57 -18.25 17.60 -3.04 -0.05 -18.30 16 20 N -0.62 -12.65 2.81 -817.83 -2.30 -14.95 16 21 C 0.07 1.02 6.18 86.38 0.53 1.56 16 22 C 0.23 3.56 5.60 71.98 0.40 3.97 16 23 F -0.21 -4.32 16.55 44.97 0.74 -3.58 16 24 F -0.22 -5.35 16.98 44.97 0.76 -4.59 16 25 C 0.13 2.70 5.99 86.79 0.52 3.22 16 26 C 0.07 1.75 2.82 84.11 0.24 1.99 16 27 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.02 0.77 5.90 -2.39 -0.01 0.75 16 29 H 0.02 0.66 6.46 -2.38 -0.02 0.64 16 30 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 31 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 32 H 0.08 2.08 7.08 -2.39 -0.02 2.06 16 33 H 0.04 0.94 6.73 -2.38 -0.02 0.93 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.20 7.16 -2.39 -0.02 1.18 16 37 H 0.08 1.74 7.83 -2.38 -0.02 1.72 16 38 H 0.11 2.12 7.86 -2.39 -0.02 2.10 16 39 H 0.12 2.24 7.94 -2.38 -0.02 2.22 16 40 H 0.11 1.55 7.93 -2.38 -0.02 1.53 16 41 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.56 7.95 -2.39 -0.02 1.55 16 44 H 0.10 2.21 5.99 -2.39 -0.01 2.20 16 45 H 0.08 1.97 7.69 -2.39 -0.02 1.96 16 46 H 0.04 1.11 6.81 -2.38 -0.02 1.09 16 Total: -1.00 -72.40 361.86 1.99 -70.40 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.93 Total: 13.47 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.98 Total: -0.79 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -6.01 Total: -90.96 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.30 Total: -28.49 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 1.51 Total: -8.17 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -72.40 1.99 -70.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.912 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds