Wall clock time and date at job start Sat Apr 11 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47469 * 270.00190 * 3 2 1 5 5 H 1.48508 * 109.46994 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.47121 * 149.99960 * 3 2 1 7 7 C 1.37881 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46942 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47113 * 180.02562 * 10 9 7 12 12 C 1.48466 * 110.99894 * 318.08114 * 11 10 9 13 13 C 1.54176 * 111.95808 * 192.52932 * 12 11 10 14 14 O 1.40009 * 113.30122 * 318.65032 * 13 12 11 15 15 C 1.44625 * 112.97635 * 94.39633 * 14 13 12 16 16 C 1.46306 * 111.17630 * 280.88825 * 15 14 13 17 17 C 1.54611 * 112.52487 * 182.30987 * 16 15 14 18 18 C 1.51273 * 104.19594 * 145.55704 * 17 16 15 19 19 O 1.21279 * 124.93397 * 163.88686 * 18 17 16 20 20 N 1.34420 * 110.13328 * 343.89272 * 18 17 16 21 21 C 1.46503 * 124.36148 * 179.36542 * 20 18 17 22 22 C 1.52994 * 109.47108 * 90.02115 * 21 20 18 23 23 F 1.39905 * 109.47286 * 300.00143 * 22 21 20 24 24 F 1.39900 * 109.47188 * 60.00255 * 22 21 20 25 25 C 1.46771 * 111.28521 * 359.39980 * 20 18 17 26 26 C 1.44074 * 111.00063 * 189.99848 * 11 10 9 27 27 H 0.96992 * 120.00771 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46928 * 60.00555 * 9 7 2 29 29 H 1.08999 * 109.47527 * 300.00302 * 9 7 2 30 30 H 1.09002 * 109.46841 * 60.00520 * 10 9 7 31 31 H 1.08999 * 109.47272 * 300.00477 * 10 9 7 32 32 H 1.09000 * 108.98190 * 313.16067 * 12 11 10 33 33 H 1.08995 * 108.98701 * 71.97250 * 12 11 10 34 34 H 1.09003 * 108.71702 * 79.63276 * 13 12 11 35 35 H 1.09001 * 108.71629 * 197.65966 * 13 12 11 36 36 H 1.08998 * 109.13802 * 160.45701 * 15 14 13 37 37 H 1.08996 * 109.13510 * 41.32500 * 15 14 13 38 38 H 1.08997 * 110.48615 * 264.24091 * 17 16 15 39 39 H 1.08999 * 110.48427 * 26.88069 * 17 16 15 40 40 H 1.09001 * 109.47077 * 210.02695 * 21 20 18 41 41 H 1.09007 * 109.46622 * 330.02326 * 21 20 18 42 42 H 1.09000 * 109.47162 * 180.02562 * 22 21 20 43 43 H 1.09004 * 110.24983 * 258.18144 * 25 20 18 44 44 H 1.08996 * 110.25393 * 136.16691 * 25 20 18 45 45 H 1.09005 * 109.72827 * 99.89538 * 26 11 10 46 46 H 1.09002 * 109.73275 * 339.22040 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0226 -1.6051 -0.9270 13 6 7.5324 -1.7841 -1.1831 14 8 8.2549 -2.1115 -0.0295 15 6 8.4379 -3.5365 0.1365 16 6 7.2319 -4.1650 0.6759 17 6 7.4124 -5.6811 0.9195 18 6 6.5816 -5.9602 2.1525 19 8 6.2287 -7.0616 2.5175 20 7 6.2911 -4.8101 2.7848 21 6 5.4897 -4.7184 4.0077 22 6 6.4073 -4.8204 5.2277 23 9 7.0817 -6.0459 5.2029 24 9 7.3374 -3.7757 5.2003 25 6 6.8796 -3.6578 2.0918 26 6 6.0070 -3.9610 -0.2344 27 1 -0.4851 0.8399 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1505 -0.8908 31 1 3.6586 -3.1502 0.8892 32 1 5.4915 -1.6732 -1.8764 33 1 5.8519 -0.6190 -0.4954 34 1 7.6709 -2.5761 -1.9191 35 1 7.9300 -0.8557 -1.5932 36 1 9.2687 -3.7129 0.8197 37 1 8.6710 -3.9819 -0.8306 38 1 7.0375 -6.2514 0.0697 39 1 8.4606 -5.9155 1.1048 40 1 4.9642 -3.7636 4.0270 41 1 4.7650 -5.5324 4.0290 42 1 5.8110 -4.7526 6.1376 43 1 7.7802 -3.3264 2.6087 44 1 6.1569 -2.8441 2.0321 45 1 6.3035 -4.0617 -1.2785 46 1 5.2433 -4.7012 0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:29 Heat of formation + Delta-G solvation = -160.483196 kcal Electronic energy + Delta-G solvation = -31028.098116 eV Core-core repulsion = 26589.026263 eV Total energy + Delta-G solvation = -4439.071853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.99164 -47.00553 -41.23557 -39.10241 -36.62750 -36.36199 -34.37762 -32.96287 -30.51765 -30.38270 -28.87475 -27.67747 -26.22312 -25.64622 -23.90057 -23.18129 -21.80268 -20.04723 -19.63561 -19.50459 -17.82615 -17.38381 -17.08796 -17.02986 -16.46682 -16.43059 -16.01347 -15.65867 -15.36032 -15.02720 -14.57764 -14.21134 -13.98440 -13.92145 -13.82105 -13.58313 -13.37026 -13.28511 -13.01561 -12.95109 -12.63711 -12.47653 -12.40763 -12.38741 -11.94543 -11.57402 -11.44716 -11.34435 -11.11210 -10.95794 -10.88902 -10.70945 -10.11706 -9.96954 -9.91937 -9.79805 -9.56681 -9.26091 -8.77508 -8.60854 -7.85581 -6.11413 -4.10489 2.51453 2.80672 3.25116 3.33893 3.37250 3.58565 3.71732 4.07341 4.11478 4.19096 4.38770 4.40933 4.46789 4.56467 4.66598 4.73902 5.01128 5.06613 5.14223 5.21417 5.23053 5.25682 5.31923 5.35549 5.47633 5.49332 5.56505 5.64850 5.68130 5.76218 5.95202 6.03949 6.12753 6.15977 6.25294 6.45630 6.60427 7.02235 7.03431 7.11426 7.22610 7.43431 7.56324 7.75422 8.10678 8.44760 8.92317 9.50498 11.01901 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.004089 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.225195 B = 6845.535114 C = 7926.162714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.013 4.013 10 C 0.077 3.923 11 N -0.548 5.548 12 C 0.032 3.968 13 C 0.059 3.941 14 O -0.356 6.356 15 C 0.081 3.919 16 C -0.098 4.098 17 C -0.143 4.143 18 C 0.521 3.479 19 O -0.530 6.530 20 N -0.613 5.613 21 C 0.078 3.922 22 C 0.243 3.757 23 F -0.200 7.200 24 F -0.203 7.203 25 C 0.120 3.880 26 C 0.072 3.928 27 H 0.264 0.736 28 H 0.025 0.975 29 H 0.013 0.987 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.118 0.882 45 H 0.042 0.958 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.100 -7.841 3.366 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.088 0.912 9 C -0.050 4.050 10 C -0.049 4.049 11 N -0.273 5.273 12 C -0.095 4.095 13 C -0.019 4.019 14 O -0.273 6.273 15 C 0.004 3.996 16 C -0.100 4.100 17 C -0.184 4.184 18 C 0.309 3.691 19 O -0.406 6.406 20 N -0.346 5.346 21 C -0.046 4.046 22 C 0.188 3.812 23 F -0.182 7.182 24 F -0.185 7.185 25 C -0.002 4.002 26 C -0.057 4.057 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.060 0.940 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.960 -8.031 4.170 20.111 hybrid contribution -0.089 0.544 -0.966 1.112 sum 17.871 -7.487 3.204 19.639 Atomic orbital electron populations 1.69905 1.06350 1.26993 1.50846 1.24994 0.94687 0.99149 0.94417 0.86790 0.80528 0.83584 0.78490 1.20373 1.21372 1.18743 1.21047 0.89332 0.94481 1.51296 0.91185 1.19697 0.96884 0.91672 0.96772 1.22165 0.82683 1.00340 0.99741 1.60636 1.09636 1.04498 1.52505 1.23195 0.93873 0.97264 0.95180 1.22451 0.91529 1.00704 0.87219 1.87846 1.73042 1.21563 1.44892 1.21461 0.95533 0.81848 1.00721 1.21124 0.97758 0.93886 0.97267 1.22393 1.01838 0.96341 0.97827 1.20807 0.79583 0.83728 0.84951 1.90722 1.55289 1.24394 1.70226 1.48128 1.52140 1.08893 1.25451 1.22514 0.93108 1.06808 0.82150 1.22552 0.85317 0.71562 1.01797 1.93019 1.82711 1.44617 1.97832 1.92988 1.69334 1.58291 1.97872 1.22357 1.00019 0.88732 0.89072 1.21752 0.95607 0.91825 0.96542 0.92662 0.95717 0.96888 0.95539 0.91449 0.93572 0.89668 0.93867 0.89568 0.88917 0.92353 0.87828 0.87743 0.86635 0.87147 0.86582 0.91404 0.86395 0.93952 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.29 9.66 -34.44 -0.33 -14.62 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.28 3.20 -27.88 -0.09 -0.37 16 10 C 0.08 1.41 4.91 -3.82 -0.02 1.39 16 11 N -0.55 -8.07 2.49 -234.20 -0.58 -8.66 16 12 C 0.03 0.45 4.57 -2.34 -0.01 0.44 16 13 C 0.06 0.65 6.05 37.77 0.23 0.88 16 14 O -0.36 -4.18 10.34 -32.95 -0.34 -4.52 16 15 C 0.08 0.75 4.91 33.97 0.17 0.91 16 16 C -0.10 -1.02 0.63 -155.57 -0.10 -1.12 16 17 C -0.14 -1.43 5.75 -26.76 -0.15 -1.58 16 18 C 0.52 7.06 7.56 -10.86 -0.08 6.97 16 19 O -0.53 -9.02 17.60 5.56 0.10 -8.92 16 20 N -0.61 -7.54 2.81 -172.41 -0.48 -8.03 16 21 C 0.08 0.82 6.17 -4.04 -0.02 0.80 16 22 C 0.24 2.43 5.60 37.15 0.21 2.64 16 23 F -0.20 -2.64 16.98 2.25 0.04 -2.60 16 24 F -0.20 -2.39 17.12 2.25 0.04 -2.35 16 25 C 0.12 1.42 5.96 -3.12 -0.02 1.40 16 26 C 0.07 0.88 4.21 -4.83 -0.02 0.86 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 29 H 0.01 0.28 5.85 -51.93 -0.30 -0.02 16 30 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.66 7.76 -51.93 -0.40 0.26 16 33 H 0.08 1.34 7.08 -51.93 -0.37 0.97 16 34 H 0.04 0.41 6.58 -51.93 -0.34 0.07 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.74 8.12 -51.93 -0.42 0.31 16 37 H 0.06 0.44 7.49 -51.93 -0.39 0.05 16 38 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 40 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.11 1.16 7.93 -51.93 -0.41 0.74 16 42 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 44 H 0.12 1.64 6.37 -51.93 -0.33 1.31 16 45 H 0.04 0.48 6.90 -51.93 -0.36 0.12 16 46 H 0.07 0.97 7.28 -51.93 -0.38 0.59 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -33.47 363.39 -7.00 -40.48 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.01 Total: -1.23 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.34 Total: 0.46 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.29 Total: -43.12 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.24 Total: -13.45 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.08 Total: -4.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.47 -7.00 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.008 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds