Wall clock time and date at job start Sat Apr 11 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47469 * 270.00190 * 3 2 1 5 5 H 1.48508 * 109.46994 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.47121 * 149.99960 * 3 2 1 7 7 C 1.37881 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46942 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47113 * 180.02562 * 10 9 7 12 12 C 1.48466 * 110.99894 * 318.08114 * 11 10 9 13 13 C 1.54176 * 111.95808 * 192.52932 * 12 11 10 14 14 O 1.40009 * 113.30122 * 318.65032 * 13 12 11 15 15 C 1.44625 * 112.97635 * 94.39633 * 14 13 12 16 16 C 1.46306 * 111.17630 * 280.88825 * 15 14 13 17 17 C 1.54611 * 112.52487 * 182.30987 * 16 15 14 18 18 C 1.51273 * 104.19594 * 145.55704 * 17 16 15 19 19 O 1.21279 * 124.93397 * 163.88686 * 18 17 16 20 20 N 1.34420 * 110.13328 * 343.89272 * 18 17 16 21 21 C 1.46503 * 124.36148 * 179.36542 * 20 18 17 22 22 C 1.52994 * 109.47108 * 90.02115 * 21 20 18 23 23 F 1.39905 * 109.47286 * 300.00143 * 22 21 20 24 24 F 1.39900 * 109.47188 * 60.00255 * 22 21 20 25 25 C 1.46771 * 111.28521 * 359.39980 * 20 18 17 26 26 C 1.44074 * 111.00063 * 189.99848 * 11 10 9 27 27 H 0.96992 * 120.00771 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46928 * 60.00555 * 9 7 2 29 29 H 1.08999 * 109.47527 * 300.00302 * 9 7 2 30 30 H 1.09002 * 109.46841 * 60.00520 * 10 9 7 31 31 H 1.08999 * 109.47272 * 300.00477 * 10 9 7 32 32 H 1.09000 * 108.98190 * 313.16067 * 12 11 10 33 33 H 1.08995 * 108.98701 * 71.97250 * 12 11 10 34 34 H 1.09003 * 108.71702 * 79.63276 * 13 12 11 35 35 H 1.09001 * 108.71629 * 197.65966 * 13 12 11 36 36 H 1.08998 * 109.13802 * 160.45701 * 15 14 13 37 37 H 1.08996 * 109.13510 * 41.32500 * 15 14 13 38 38 H 1.08997 * 110.48615 * 264.24091 * 17 16 15 39 39 H 1.08999 * 110.48427 * 26.88069 * 17 16 15 40 40 H 1.09001 * 109.47077 * 210.02695 * 21 20 18 41 41 H 1.09007 * 109.46622 * 330.02326 * 21 20 18 42 42 H 1.09000 * 109.47162 * 180.02562 * 22 21 20 43 43 H 1.09004 * 110.24983 * 258.18144 * 25 20 18 44 44 H 1.08996 * 110.25393 * 136.16691 * 25 20 18 45 45 H 1.09005 * 109.72827 * 99.89538 * 26 11 10 46 46 H 1.09002 * 109.73275 * 339.22040 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0226 -1.6051 -0.9270 13 6 7.5324 -1.7841 -1.1831 14 8 8.2549 -2.1115 -0.0295 15 6 8.4379 -3.5365 0.1365 16 6 7.2319 -4.1650 0.6759 17 6 7.4124 -5.6811 0.9195 18 6 6.5816 -5.9602 2.1525 19 8 6.2287 -7.0616 2.5175 20 7 6.2911 -4.8101 2.7848 21 6 5.4897 -4.7184 4.0077 22 6 6.4073 -4.8204 5.2277 23 9 7.0817 -6.0459 5.2029 24 9 7.3374 -3.7757 5.2003 25 6 6.8796 -3.6578 2.0918 26 6 6.0070 -3.9610 -0.2344 27 1 -0.4851 0.8399 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1505 -0.8908 31 1 3.6586 -3.1502 0.8892 32 1 5.4915 -1.6732 -1.8764 33 1 5.8519 -0.6190 -0.4954 34 1 7.6709 -2.5761 -1.9191 35 1 7.9300 -0.8557 -1.5932 36 1 9.2687 -3.7129 0.8197 37 1 8.6710 -3.9819 -0.8306 38 1 7.0375 -6.2514 0.0697 39 1 8.4606 -5.9155 1.1048 40 1 4.9642 -3.7636 4.0270 41 1 4.7650 -5.5324 4.0290 42 1 5.8110 -4.7526 6.1376 43 1 7.7802 -3.3264 2.6087 44 1 6.1569 -2.8441 2.0321 45 1 6.3035 -4.0617 -1.2785 46 1 5.2433 -4.7012 0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:29 Heat of formation + Delta-G solvation = -182.916054 kcal Electronic energy + Delta-G solvation = -31029.070878 eV Core-core repulsion = 26589.026263 eV Total energy + Delta-G solvation = -4440.044615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.88326 -47.91451 -42.18149 -40.10586 -37.75412 -37.47261 -35.37355 -34.87839 -32.23720 -31.27674 -29.88321 -28.66099 -27.47154 -26.63179 -25.27282 -24.05819 -23.21644 -21.02488 -20.95901 -20.48343 -19.04938 -18.67575 -18.28073 -18.01780 -17.44211 -17.31072 -17.03013 -16.67084 -16.42014 -16.17058 -16.05564 -15.58120 -15.17204 -15.09210 -14.83685 -14.68745 -14.50674 -14.34962 -14.29091 -14.07803 -13.91746 -13.41930 -13.37338 -13.31265 -13.26967 -13.05236 -12.74718 -12.38209 -12.21929 -12.15603 -12.09662 -11.80362 -11.63056 -11.56108 -11.39552 -11.27681 -10.96171 -10.77119 -10.45721 -9.76096 -9.06669 -8.30219 -6.34846 1.35825 1.38899 1.50558 1.50679 1.91310 2.35803 2.69409 2.92073 3.05655 3.06995 3.31692 3.35880 3.52559 3.62227 3.70474 3.82563 3.91834 4.07327 4.19180 4.25556 4.36749 4.41249 4.43104 4.47055 4.53121 4.59267 4.67505 4.69433 4.77051 4.78463 4.85205 4.86761 4.91607 5.06057 5.12080 5.17193 5.30879 5.46910 5.49987 5.62355 6.06078 6.06858 6.28033 6.32434 6.44088 6.73693 7.09439 7.30294 8.86614 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.004089 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.225195 B = 6845.535114 C = 7926.162714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.028 0.972 9 C -0.002 4.002 10 C 0.092 3.908 11 N -0.546 5.546 12 C 0.027 3.973 13 C 0.065 3.935 14 O -0.371 6.371 15 C 0.076 3.924 16 C -0.084 4.084 17 C -0.133 4.133 18 C 0.510 3.490 19 O -0.573 6.573 20 N -0.616 5.616 21 C 0.069 3.931 22 C 0.241 3.759 23 F -0.219 7.219 24 F -0.213 7.213 25 C 0.122 3.878 26 C 0.071 3.929 27 H 0.266 0.734 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.160 0.840 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.243 -7.107 2.801 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.040 4.040 10 C -0.035 4.035 11 N -0.270 5.270 12 C -0.100 4.100 13 C -0.013 4.013 14 O -0.289 6.289 15 C 0.000 4.000 16 C -0.086 4.086 17 C -0.173 4.173 18 C 0.299 3.701 19 O -0.453 6.453 20 N -0.348 5.348 21 C -0.055 4.055 22 C 0.187 3.813 23 F -0.201 7.201 24 F -0.194 7.194 25 C 0.000 4.000 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.177 0.823 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.135 -7.291 3.604 22.645 hybrid contribution -1.157 0.252 -0.761 1.407 sum 19.978 -7.039 2.843 21.371 Atomic orbital electron populations 1.70065 1.08403 1.28190 1.52593 1.25966 0.95504 1.03442 0.93992 0.85666 0.79616 0.78190 0.79238 1.19069 1.21263 1.16765 1.21404 0.92085 0.92972 1.50595 0.95329 1.19545 0.93375 0.94247 0.96820 1.21792 0.85495 0.97507 0.98690 1.60581 1.06852 1.06220 1.53340 1.23286 0.96490 0.95947 0.94313 1.22424 0.88941 1.02426 0.87518 1.87846 1.72732 1.23050 1.45260 1.21668 0.95010 0.80730 1.02567 1.21059 0.97509 0.94312 0.95710 1.22410 1.02679 0.95821 0.96396 1.21456 0.79496 0.83258 0.85880 1.90695 1.57163 1.25895 1.71579 1.48315 1.51789 1.08896 1.25787 1.22693 0.93363 1.07231 0.82179 1.22913 0.84893 0.70356 1.03159 1.92980 1.83199 1.45957 1.97957 1.92963 1.69832 1.58663 1.97971 1.22312 0.99443 0.87991 0.90208 1.21832 0.95992 0.89853 0.98136 0.92506 0.95929 0.95921 0.96628 0.92694 0.94070 0.91547 0.91683 0.88067 0.87088 0.89678 0.86599 0.85117 0.85589 0.87515 0.82345 0.90946 0.88434 0.92094 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.01 0.45 5.47 84.66 0.46 0.91 16 3 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.53 -29.93 9.66 25.60 0.25 -29.68 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C 0.00 -0.10 3.20 29.85 0.10 0.00 16 10 C 0.09 3.43 4.91 86.30 0.42 3.85 16 11 N -0.55 -15.40 2.49 -894.88 -2.23 -17.63 16 12 C 0.03 0.70 4.57 86.40 0.39 1.09 16 13 C 0.06 1.19 6.05 72.38 0.44 1.63 16 14 O -0.37 -7.34 10.34 -140.81 -1.46 -8.79 16 15 C 0.08 1.08 4.91 69.92 0.34 1.42 16 16 C -0.08 -1.51 0.63 -52.87 -0.03 -1.55 16 17 C -0.13 -2.29 5.75 30.58 0.18 -2.11 16 18 C 0.51 13.38 7.56 87.90 0.66 14.04 16 19 O -0.57 -19.62 17.60 -3.02 -0.05 -19.67 16 20 N -0.62 -14.75 2.81 -817.97 -2.30 -17.04 16 21 C 0.07 1.43 6.17 86.38 0.53 1.97 16 22 C 0.24 4.57 5.60 71.98 0.40 4.97 16 23 F -0.22 -5.67 16.98 44.97 0.76 -4.91 16 24 F -0.21 -4.74 17.12 44.97 0.77 -3.97 16 25 C 0.12 2.71 5.96 86.83 0.52 3.23 16 26 C 0.07 1.59 4.21 87.16 0.37 1.96 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 29 H 0.02 0.97 5.85 -2.39 -0.01 0.96 16 30 H 0.02 0.60 8.07 -2.39 -0.02 0.58 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.11 7.76 -2.39 -0.02 1.09 16 33 H 0.07 1.96 7.08 -2.39 -0.02 1.95 16 34 H 0.06 0.93 6.58 -2.39 -0.02 0.91 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 1.24 8.12 -2.39 -0.02 1.22 16 37 H 0.09 0.82 7.49 -2.39 -0.02 0.80 16 38 H 0.12 1.77 7.86 -2.39 -0.02 1.75 16 39 H 0.13 1.62 7.95 -2.39 -0.02 1.60 16 40 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.11 2.29 7.93 -2.38 -0.02 2.27 16 42 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.56 7.93 -2.38 -0.02 1.54 16 44 H 0.10 2.62 6.37 -2.39 -0.02 2.61 16 45 H 0.06 1.17 6.90 -2.38 -0.02 1.16 16 46 H 0.06 1.50 7.28 -2.39 -0.02 1.48 16 Total: -1.00 -75.38 363.39 3.65 -71.74 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.93 Total: 12.26 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.03 Total: 1.73 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -4.22 Total: -93.42 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.51 Total: -28.46 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 1.53 Total: -8.87 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -75.38 3.65 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.181 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds