Wall clock time and date at job start Sat Apr 11 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47166 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47008 * 120.00009 * 3 2 1 6 6 H 1.48500 * 109.47268 * 240.00105 * 3 2 1 7 7 C 1.38812 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99718 * 204.33792 * 7 2 1 9 9 N 1.36939 * 119.99894 * 24.33934 * 7 2 1 10 10 C 1.46925 * 120.64339 * 29.02868 * 9 7 2 11 11 C 1.53628 * 108.53478 * 126.29892 * 10 9 7 12 12 C 1.52999 * 109.27564 * 54.80638 * 11 10 9 13 13 C 1.52990 * 109.63364 * 298.66042 * 12 11 10 14 14 C 1.46932 * 120.63776 * 209.31432 * 9 7 2 15 15 C 1.53252 * 109.36332 * 178.71829 * 12 11 10 16 16 N 1.47149 * 108.41225 * 187.91239 * 15 12 11 17 17 C 1.34774 * 120.99342 * 230.49327 * 16 15 12 18 18 O 1.21283 * 119.99282 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00386 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46890 * 179.97438 * 19 17 16 21 21 C 1.52993 * 109.46792 * 179.97438 * 20 19 17 22 22 F 1.39905 * 109.46997 * 175.00118 * 21 20 19 23 23 F 1.39899 * 109.47367 * 295.00037 * 21 20 19 24 24 C 1.47161 * 118.02327 * 50.47516 * 16 15 12 25 25 C 1.53300 * 108.37118 * 309.40350 * 24 16 15 26 26 O 1.42893 * 109.54877 * 58.91430 * 12 11 10 27 27 H 0.96998 * 119.99676 * 185.77815 * 1 2 3 28 28 H 1.09008 * 109.58706 * 246.12469 * 10 9 7 29 29 H 1.08998 * 109.59128 * 6.55709 * 10 9 7 30 30 H 1.08997 * 109.62551 * 294.80352 * 11 10 9 31 31 H 1.09001 * 109.44619 * 174.69732 * 11 10 9 32 32 H 1.09006 * 109.48402 * 301.24580 * 13 12 11 33 33 H 1.08991 * 109.51177 * 181.18759 * 13 12 11 34 34 H 1.09000 * 109.58952 * 353.43033 * 14 9 7 35 35 H 1.08999 * 109.58978 * 113.72122 * 14 9 7 36 36 H 1.09005 * 109.67556 * 307.64470 * 15 12 11 37 37 H 1.09000 * 109.67996 * 68.17986 * 15 12 11 38 38 H 1.08999 * 109.47094 * 299.99826 * 19 17 16 39 39 H 1.08994 * 109.46845 * 60.00106 * 19 17 16 40 40 H 1.08995 * 109.47205 * 300.00359 * 20 19 17 41 41 H 1.08999 * 109.46768 * 59.99904 * 20 19 17 42 42 H 1.09001 * 109.47207 * 55.00120 * 21 20 19 43 43 H 1.08994 * 109.68916 * 69.12489 * 24 16 15 44 44 H 1.09007 * 109.67928 * 189.68885 * 24 16 15 45 45 H 1.08998 * 109.51173 * 172.27788 * 25 24 16 46 46 H 1.09005 * 109.51524 * 292.38219 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0183 -1.2439 0.3849 9 7 1.4169 -2.3351 -0.4898 10 6 0.3966 -2.2507 -1.5437 11 6 0.8156 -3.1669 -2.7035 12 6 1.0527 -4.5810 -2.1699 13 6 2.1834 -4.5589 -1.1396 14 6 1.7836 -3.6582 0.0334 15 6 1.4397 -5.5039 -3.3305 16 7 1.4760 -6.8878 -2.8317 17 6 2.5437 -7.6789 -3.0569 18 8 3.4938 -7.2525 -3.6786 19 6 2.5575 -9.0926 -2.5353 20 6 3.8739 -9.7676 -2.9260 21 6 3.8881 -11.2026 -2.3959 22 9 5.0394 -11.8557 -2.8490 23 9 3.8831 -11.1832 -0.9970 24 6 0.3120 -7.3823 -2.0793 25 6 -0.0174 -6.3685 -0.9777 26 8 -0.1431 -5.0676 -1.5573 27 1 -0.4849 -0.8358 0.0846 28 1 -0.5657 -2.5751 -1.1475 29 1 0.3207 -1.2225 -1.8974 30 1 1.7334 -2.7898 -3.1547 31 1 0.0243 -3.1888 -3.4528 32 1 3.0904 -4.1709 -1.6034 33 1 2.3648 -5.5703 -0.7763 34 1 2.6237 -3.5593 0.7209 35 1 0.9322 -4.0931 0.5570 36 1 0.7011 -5.4204 -4.1279 37 1 2.4227 -5.2245 -3.7096 38 1 2.4634 -9.0802 -1.4495 39 1 1.7236 -9.6469 -2.9660 40 1 3.9676 -9.7799 -4.0118 41 1 4.7080 -9.2133 -2.4957 42 1 3.0053 -11.7314 -2.7551 43 1 -0.5412 -7.4865 -2.7495 44 1 0.5477 -8.3477 -1.6312 45 1 -0.9558 -6.6451 -0.4971 46 1 0.7827 -6.3622 -0.2374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700331421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:13:49 Heat of formation + Delta-G solvation = -163.073412 kcal Electronic energy + Delta-G solvation = -30251.701612 eV Core-core repulsion = 25812.517439 eV Total energy + Delta-G solvation = -4439.184174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.31318 -47.32551 -40.84013 -39.06200 -36.46180 -34.75694 -34.28880 -33.16154 -31.24599 -29.90885 -28.90616 -28.18618 -26.18129 -24.21146 -23.52865 -22.66685 -22.36134 -20.94651 -19.27690 -19.02336 -18.02499 -17.87673 -17.47357 -17.37219 -16.29968 -16.15660 -16.02423 -15.49598 -15.11085 -14.87874 -14.40447 -14.17669 -14.10018 -13.84655 -13.74484 -13.66513 -13.46163 -13.39775 -13.25522 -12.78834 -12.75451 -12.28099 -12.02556 -11.96735 -11.77007 -11.74114 -11.53793 -11.30201 -10.98359 -10.69939 -10.56284 -10.46978 -10.35724 -10.20256 -9.99133 -9.86047 -9.53918 -9.25757 -8.56919 -8.34343 -6.83686 -6.03387 -3.21547 2.35782 2.60703 3.41334 3.51230 3.54346 3.72482 3.78142 3.84354 4.00476 4.12522 4.36511 4.60730 4.62305 4.64006 4.71587 4.79194 4.95616 4.97428 4.99297 5.15513 5.23076 5.30514 5.36900 5.48624 5.55728 5.56137 5.57851 5.67673 5.77215 5.90834 6.13991 6.15816 6.19121 6.34738 6.41318 6.47150 6.65313 6.84959 7.05231 7.13131 7.26273 7.42083 7.89851 8.04225 8.61372 9.15538 9.87784 10.33975 11.24536 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.002685 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.829301 B =10426.288184 C =10782.062591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.024 4.024 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.054 0.946 9 N -0.598 5.598 10 C 0.159 3.841 11 C -0.121 4.121 12 C 0.118 3.882 13 C -0.151 4.151 14 C 0.154 3.846 15 C 0.089 3.911 16 N -0.610 5.610 17 C 0.517 3.483 18 O -0.538 6.538 19 C -0.141 4.141 20 C -0.157 4.157 21 C 0.263 3.737 22 F -0.205 7.205 23 F -0.206 7.206 24 C 0.072 3.928 25 C 0.042 3.958 26 O -0.357 6.357 27 H 0.270 0.730 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -22.707 -6.377 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.479 4.479 8 H 0.072 0.928 9 N -0.321 5.321 10 C 0.033 3.967 11 C -0.161 4.161 12 C 0.078 3.922 13 C -0.191 4.191 14 C 0.028 3.972 15 C -0.033 4.033 16 N -0.344 5.344 17 C 0.305 3.695 18 O -0.415 6.415 19 C -0.181 4.181 20 C -0.195 4.195 21 C 0.209 3.791 22 F -0.187 7.187 23 F -0.187 7.187 24 C -0.052 4.052 25 C -0.036 4.036 26 O -0.276 6.276 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.775 -20.699 -6.737 21.782 hybrid contribution 0.451 -2.085 0.230 2.146 sum 1.226 -22.784 -6.508 23.727 Atomic orbital electron populations 1.70775 1.06560 1.30415 1.47823 1.25859 0.96565 1.01452 0.98706 0.83539 0.74778 0.76097 0.76189 1.21096 1.22044 1.22049 1.19962 0.97009 0.88342 1.42598 0.92842 1.44101 1.46869 1.01339 1.39824 1.20930 0.90964 0.98012 0.86801 1.22153 1.01679 0.92355 0.99923 1.21754 0.85404 0.93855 0.91214 1.22504 0.98102 0.99581 0.98904 1.20762 0.97335 0.86555 0.92556 1.22475 1.03866 0.79971 0.97012 1.48132 1.17423 1.13637 1.55182 1.20391 0.81919 0.87319 0.79838 1.90727 1.34373 1.75307 1.41068 1.21600 0.98895 0.93882 1.03723 1.22425 0.99654 0.92964 1.04494 1.21932 0.86893 0.94603 0.75689 1.92999 1.53934 1.82974 1.88751 1.92999 1.97010 1.97421 1.31290 1.22530 0.88775 0.98576 0.95273 1.22913 1.02763 0.83630 0.94260 1.88068 1.33949 1.31016 1.74550 0.91935 0.95518 0.90387 0.90760 0.92146 0.91304 0.93021 0.92983 0.96336 0.90935 0.88262 0.87841 0.88217 0.87848 0.88448 0.87179 0.90358 0.89113 0.87965 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 12.45 55.49 0.69 -26.80 16 2 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 3 Si 1.06 25.36 29.98 -169.99 -5.10 20.26 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.35 -9.83 9.48 -15.06 -0.14 -9.98 16 8 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 9 N -0.60 -15.03 2.83 -172.05 -0.49 -15.52 16 10 C 0.16 3.71 4.49 -3.48 -0.02 3.70 16 11 C -0.12 -2.26 5.12 -26.41 -0.14 -2.39 16 12 C 0.12 1.93 0.68 -90.50 -0.06 1.86 16 13 C -0.15 -2.69 4.33 -26.64 -0.12 -2.80 16 14 C 0.15 3.30 6.28 -3.71 -0.02 3.28 16 15 C 0.09 1.25 5.29 -3.56 -0.02 1.23 16 16 N -0.61 -7.08 2.52 -172.29 -0.43 -7.52 16 17 C 0.52 6.04 7.71 -10.99 -0.08 5.95 16 18 O -0.54 -8.37 15.45 5.55 0.09 -8.28 16 19 C -0.14 -1.00 3.99 -27.88 -0.11 -1.11 16 20 C -0.16 -1.18 4.73 -26.73 -0.13 -1.31 16 21 C 0.26 1.72 5.29 37.15 0.20 1.92 16 22 F -0.21 -1.85 17.34 2.25 0.04 -1.81 16 23 F -0.21 -1.79 17.02 2.25 0.04 -1.75 16 24 C 0.07 0.62 6.54 -3.53 -0.02 0.60 16 25 C 0.04 0.48 6.60 37.31 0.25 0.73 16 26 O -0.36 -5.72 9.00 -35.23 -0.32 -6.04 16 27 H 0.27 8.18 6.72 -40.82 -0.27 7.91 16 28 H 0.03 0.66 7.54 -51.92 -0.39 0.26 16 29 H 0.08 2.04 6.38 -51.93 -0.33 1.71 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 0.82 6.16 -51.93 -0.32 0.50 16 34 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.02 0.40 7.83 -51.93 -0.41 0.00 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.53 7.07 -51.93 -0.37 1.17 16 38 H 0.10 0.65 7.45 -51.93 -0.39 0.26 16 39 H 0.10 0.41 8.01 -51.93 -0.42 -0.01 16 40 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.50 6.05 -51.93 -0.31 0.19 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -34.08 361.69 -7.49 -41.56 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.96 Total: -0.48 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.50 Total: 0.93 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.23 Total: -49.83 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.23 Total: -14.32 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.08 -7.49 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.510 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds