Wall clock time and date at job start Sat Apr 11 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47311 * 2 1 4 4 H 1.09002 * 109.47091 * 55.00093 * 3 2 1 5 5 F 1.39901 * 109.47193 * 295.00213 * 3 2 1 6 6 C 1.53005 * 109.47332 * 175.00405 * 3 2 1 7 7 N 1.46900 * 109.47267 * 175.03599 * 6 3 2 8 8 C 1.46842 * 110.99692 * 199.91219 * 7 6 3 9 9 C 1.53038 * 109.52135 * 174.15850 * 8 7 6 10 10 C 1.53119 * 109.27822 * 59.18052 * 9 8 7 11 11 C 1.53003 * 109.52267 * 182.44175 * 10 9 8 12 12 N 1.46501 * 109.46682 * 294.68031 * 11 10 9 13 13 C 1.34782 * 119.99883 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99609 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00435 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47403 * 179.97438 * 15 13 12 17 17 C 1.76195 * 99.99869 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00172 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99560 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00378 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47305 * 60.00535 * 21 19 17 23 23 H 1.48508 * 109.46995 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47197 * 299.99841 * 21 19 17 25 25 C 1.53120 * 109.15906 * 302.34636 * 10 9 8 26 26 C 1.46848 * 111.00040 * 75.70187 * 7 6 3 27 27 H 1.08997 * 109.46730 * 299.99764 * 1 2 3 28 28 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47119 * 60.00132 * 1 2 3 30 30 H 1.09004 * 109.47333 * 120.00742 * 2 1 3 31 31 H 1.09006 * 109.47208 * 239.99909 * 2 1 3 32 32 H 1.09005 * 109.46446 * 295.03394 * 6 3 2 33 33 H 1.08991 * 109.47169 * 55.03147 * 6 3 2 34 34 H 1.09001 * 109.46303 * 294.17300 * 8 7 6 35 35 H 1.09001 * 109.46369 * 54.14191 * 8 7 6 36 36 H 1.08994 * 109.50412 * 299.23679 * 9 8 7 37 37 H 1.09002 * 109.50159 * 179.11973 * 9 8 7 38 38 H 1.08996 * 109.57507 * 62.28501 * 10 9 8 39 39 H 1.08996 * 109.47391 * 54.68169 * 11 10 9 40 40 H 1.09002 * 109.46972 * 174.68544 * 11 10 9 41 41 H 0.96993 * 120.00666 * 0.02562 * 12 11 10 42 42 H 1.08996 * 109.47100 * 300.00427 * 15 13 12 43 43 H 1.09002 * 109.46911 * 59.99943 * 15 13 12 44 44 H 0.97005 * 120.00617 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.49955 * 297.70932 * 25 10 9 46 46 H 1.08998 * 109.53125 * 177.61877 * 25 10 9 47 47 H 1.09000 * 109.46215 * 305.85381 * 26 7 6 48 48 H 1.09003 * 109.46203 * 65.83607 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0679 -1.1954 6 6 3.5649 1.4442 0.1256 7 7 4.0644 2.8205 0.0064 8 6 5.4891 2.8343 -0.3493 9 6 5.9380 4.2745 -0.6070 10 6 5.6992 5.1115 0.6528 11 6 6.0894 6.5659 0.3819 12 7 7.5318 6.6472 0.1388 13 6 8.1047 7.8385 -0.1242 14 8 7.4261 8.8431 -0.1592 15 6 9.5885 7.9225 -0.3737 16 16 10.0499 9.6428 -0.6958 17 6 11.7836 9.4527 -0.9464 18 1 12.2350 8.4740 -0.8781 19 6 12.5690 10.5610 -1.2317 20 7 12.0190 11.7539 -1.3145 21 14 14.4070 10.3594 -1.4982 22 1 14.6437 9.4470 -2.6456 23 1 15.0138 11.6841 -1.7852 24 1 15.0247 9.7871 -0.2750 25 6 4.2167 5.0410 1.0294 26 6 3.8177 3.5787 1.2396 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.8499 1.0370 1.0957 33 1 3.9954 0.8315 -0.6663 34 1 6.0720 2.4132 0.4699 35 1 5.6445 2.2389 -1.2490 36 1 5.3651 4.6916 -1.4350 37 1 6.9992 4.2858 -0.8557 38 1 6.3021 4.7191 1.4717 39 1 5.5522 6.9291 -0.4942 40 1 5.8314 7.1782 1.2460 41 1 8.0744 5.8438 0.1665 42 1 10.1254 7.5599 0.5029 43 1 9.8470 7.3096 -1.2372 44 1 12.5679 12.5285 -1.5135 45 1 3.6167 5.4703 0.2270 46 1 4.0475 5.6003 1.9495 47 1 2.7592 3.5240 1.4939 48 1 4.4086 3.1542 2.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:47 Heat of formation + Delta-G solvation = -110.578812 kcal Electronic energy + Delta-G solvation = -25711.489232 eV Core-core repulsion = 21840.794571 eV Total energy + Delta-G solvation = -3870.694661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.78434 -39.85350 -38.82982 -36.05556 -34.59115 -32.92818 -32.41373 -31.24417 -29.98311 -28.75401 -26.34233 -25.43568 -23.65617 -23.59150 -21.99263 -21.34299 -20.42306 -19.88937 -17.83718 -17.06741 -16.63654 -16.15908 -16.04629 -15.86541 -15.37425 -15.24904 -14.91262 -14.79176 -14.50351 -14.23422 -14.10006 -13.87553 -13.54346 -13.36279 -13.12709 -12.95923 -12.76420 -12.61703 -12.52789 -12.45109 -12.09113 -11.71889 -11.59601 -11.53273 -11.32001 -11.05209 -11.03135 -11.02935 -10.89966 -10.77230 -10.62174 -10.58315 -9.80647 -9.35946 -9.04945 -8.83074 -8.73730 -8.21875 -6.48166 -6.19971 -3.90523 3.06954 3.14537 3.24381 3.28577 3.30081 3.33031 3.75491 4.01029 4.20757 4.22022 4.36821 4.38453 4.46087 4.50358 4.54191 4.71537 4.83732 4.90810 4.97046 5.02895 5.08639 5.14964 5.16753 5.20208 5.22988 5.26449 5.33550 5.38739 5.42746 5.47100 5.55891 5.64272 5.68088 5.68762 5.74211 5.83770 5.85371 5.92231 5.96385 6.15197 6.16180 6.59746 6.66905 6.67860 7.60500 7.75115 8.36363 8.66051 9.25048 10.87384 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.001648 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.895804 B =16981.168020 C =17347.668922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.100 3.900 4 H 0.078 0.922 5 F -0.201 7.201 6 C 0.027 3.973 7 N -0.534 5.534 8 C 0.059 3.941 9 C -0.113 4.113 10 C -0.099 4.099 11 C 0.127 3.873 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.109 4.109 26 C 0.056 3.944 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.396 0.604 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.921 -26.665 5.943 33.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.063 3.937 4 H 0.096 0.904 5 F -0.182 7.182 6 C -0.102 4.102 7 N -0.258 5.258 8 C -0.069 4.069 9 C -0.151 4.151 10 C -0.118 4.118 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.147 4.147 26 C -0.072 4.072 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.295 -24.521 5.443 32.930 hybrid contribution 2.693 -2.108 0.522 3.460 sum -18.602 -26.630 5.965 33.026 Atomic orbital electron populations 1.21751 0.94673 1.02205 1.02519 1.22132 0.97478 0.95729 1.03678 1.21556 0.94402 0.92976 0.84718 0.90419 1.92836 1.92624 1.84171 1.48568 1.22724 0.94936 0.90693 1.01858 1.61825 1.17545 1.12248 1.34211 1.22105 0.86830 0.97795 1.00149 1.21671 1.01351 0.93923 0.98132 1.21441 0.97066 0.94978 0.98318 1.21296 0.81394 0.95361 1.01628 1.46013 1.08735 1.09844 1.74713 1.20297 0.89758 0.82711 0.75575 1.90703 1.64436 1.34917 1.49186 1.23529 0.93962 1.08326 1.04588 1.85400 1.07731 0.98184 1.92026 1.22834 0.92823 0.96707 1.56137 0.91003 1.24984 0.99417 0.94444 0.94673 1.70005 1.36264 0.98577 1.45431 0.86232 0.82937 0.77556 0.78809 1.19947 1.20800 1.19968 1.21551 0.95245 0.95455 1.02482 1.22146 1.00844 0.94313 0.89917 0.92513 0.92184 0.91973 0.90331 0.90643 0.93003 0.89756 0.94844 0.90569 0.90453 0.91119 0.90849 0.91453 0.91668 0.76989 0.89320 0.89284 0.92132 0.90398 0.90964 0.90762 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.83 37.16 0.37 -0.35 16 2 C -0.15 -0.69 5.70 -26.73 -0.15 -0.84 16 3 C 0.10 0.63 3.33 -26.73 -0.09 0.54 16 4 H 0.08 0.43 7.01 -51.93 -0.36 0.07 16 5 F -0.20 -1.98 16.59 2.25 0.04 -1.95 16 6 C 0.03 0.16 4.78 -3.82 -0.02 0.14 16 7 N -0.53 -4.09 4.43 -234.67 -1.04 -5.13 16 8 C 0.06 0.43 5.43 -3.84 -0.02 0.41 16 9 C -0.11 -0.93 5.22 -26.65 -0.14 -1.07 16 10 C -0.10 -0.83 2.29 -90.50 -0.21 -1.04 16 11 C 0.13 1.49 5.07 -4.04 -0.02 1.47 16 12 N -0.74 -9.86 5.31 -60.29 -0.32 -10.18 16 13 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 14 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 15 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.11 -0.84 5.38 -26.65 -0.14 -0.98 16 26 C 0.06 0.38 5.29 -3.84 -0.02 0.36 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.36 7.94 -51.93 -0.41 -0.06 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.25 8.00 -51.93 -0.42 -0.17 16 33 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.55 7.27 -51.93 -0.38 0.17 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 4.13 7.69 -40.82 -0.31 3.81 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.47 6.80 -51.93 -0.35 0.12 16 48 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -34.87 398.72 -10.35 -45.23 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.52 Total: -1.69 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.11 Total: -7.38 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.63 Total: -40.88 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.87 -10.35 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.354 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds