Wall clock time and date at job start Sat Apr 11 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.52044 * 2 1 4 4 C 1.53034 * 109.49586 * 239.92049 * 2 1 3 5 5 C 1.53039 * 109.53665 * 178.68359 * 4 2 1 6 6 C 1.52763 * 109.38557 * 61.24077 * 5 4 2 7 7 N 1.46926 * 109.00598 * 305.58894 * 6 5 4 8 8 C 1.34781 * 120.63130 * 233.58466 * 7 6 5 9 9 O 1.21282 * 120.00102 * 173.76050 * 8 7 6 10 10 C 1.50697 * 119.99797 * 353.76340 * 8 7 6 11 11 S 1.80998 * 109.47068 * 180.02562 * 10 8 7 12 12 C 1.76205 * 99.99966 * 180.02562 * 11 10 8 13 13 H 1.07991 * 120.00077 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99687 * 179.97438 * 12 11 10 15 15 N 1.31630 * 119.99859 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00431 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47148 * 89.99859 * 16 14 12 18 18 H 1.48497 * 109.47403 * 210.00047 * 16 14 12 19 19 H 1.48502 * 109.46985 * 330.00042 * 16 14 12 20 20 C 1.46925 * 118.74055 * 53.30796 * 7 6 5 21 21 H 1.08997 * 109.58669 * 66.57117 * 20 7 6 22 22 C 1.52999 * 109.59013 * 186.85557 * 20 7 6 23 23 N 1.46896 * 109.47174 * 290.76276 * 22 20 7 24 24 C 1.46904 * 111.00017 * 180.02562 * 23 22 20 25 25 C 1.53004 * 109.46995 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.46954 * 179.97438 * 25 24 23 27 27 F 1.39901 * 109.47012 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.47401 * 299.91717 * 1 2 3 29 29 H 1.08999 * 109.47283 * 59.91786 * 1 2 3 30 30 H 1.08999 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46230 * 298.69974 * 4 2 1 32 32 H 1.08996 * 109.46053 * 58.67836 * 4 2 1 33 33 H 1.09008 * 109.49948 * 181.31847 * 5 4 2 34 34 H 1.09003 * 109.49581 * 301.38234 * 5 4 2 35 35 H 1.08998 * 109.51097 * 185.70788 * 6 5 4 36 36 H 1.08997 * 109.43274 * 65.42605 * 6 5 4 37 37 H 1.09006 * 109.47206 * 59.99823 * 10 8 7 38 38 H 1.09000 * 109.47076 * 300.00201 * 10 8 7 39 39 H 0.96996 * 120.00247 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.46630 * 50.75966 * 22 20 7 41 41 H 1.09001 * 109.47014 * 170.75607 * 22 20 7 42 42 H 1.00903 * 110.99378 * 303.94891 * 23 22 20 43 43 H 1.08998 * 109.46296 * 299.99368 * 24 23 22 44 44 H 1.08992 * 109.47330 * 59.99627 * 24 23 22 45 45 H 1.09002 * 109.46499 * 299.99527 * 25 24 23 46 46 H 1.08995 * 109.47336 * 59.99215 * 25 24 23 47 47 H 1.08992 * 109.47111 * 299.99703 * 26 25 24 48 48 H 1.09000 * 109.46675 * 59.99878 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0407 -0.7230 -1.2483 5 6 3.5708 -0.6950 -1.2660 6 6 4.1055 -1.4216 -0.0332 7 7 3.5046 -0.8292 1.1696 8 6 4.2811 -0.3856 2.1779 9 8 3.7823 0.2030 3.1137 10 6 5.7692 -0.6209 2.1425 11 16 6.5273 0.0866 3.6260 12 6 8.2161 -0.3203 3.3304 13 1 8.4938 -0.8546 2.4339 14 6 9.1893 0.0459 4.2497 15 7 10.4508 -0.2585 4.0291 16 14 8.7091 0.9708 5.8000 17 1 8.4057 -0.0002 6.8817 18 1 9.8316 1.8467 6.2216 19 1 7.5081 1.8011 5.5290 20 6 2.0413 -0.7238 1.2496 21 1 1.6054 -1.7215 1.3006 22 6 1.6517 0.0704 2.4979 23 7 1.9600 -0.7199 3.6972 24 6 1.5977 0.0127 4.9179 25 6 1.9322 -0.8407 6.1430 26 6 1.5555 -0.0775 7.4144 27 9 1.8608 -0.8581 8.5346 28 1 -0.3634 0.5126 0.8907 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6967 -1.7572 -1.2353 32 1 1.6583 -0.2243 -2.1388 33 1 3.9334 -1.1896 -2.1672 34 1 3.9158 0.3389 -1.2546 35 1 5.1895 -1.3159 0.0100 36 1 3.8413 -2.4774 -0.0916 37 1 6.1912 -0.1461 1.2567 38 1 5.9669 -1.6923 2.1095 39 1 11.1309 -0.0029 4.6717 40 1 2.2130 1.0044 2.5241 41 1 0.5841 0.2888 2.4711 42 1 1.5019 -1.6184 3.6656 43 1 2.1584 0.9464 4.9610 44 1 0.5298 0.2302 4.9077 45 1 1.3712 -1.7743 6.0995 46 1 3.0001 -1.0587 6.1534 47 1 2.1167 0.8558 7.4576 48 1 0.4876 0.1407 7.4041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271696607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:15:18 Heat of formation + Delta-G solvation = -69.400196 kcal Electronic energy + Delta-G solvation = -27711.196463 eV Core-core repulsion = 23842.287441 eV Total energy + Delta-G solvation = -3868.909022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.55315 -40.43357 -37.34495 -36.44061 -33.98964 -32.93489 -32.38142 -31.20195 -29.47547 -27.06794 -26.25054 -25.54005 -24.49623 -23.02363 -21.72513 -21.28617 -20.52872 -19.07555 -17.47201 -16.68466 -16.29080 -16.03803 -15.90701 -15.49532 -15.27796 -15.02038 -14.91435 -14.65268 -14.27005 -13.90979 -13.74441 -13.62480 -13.31699 -13.16589 -12.96696 -12.79895 -12.73574 -12.55822 -12.09614 -11.85398 -11.81393 -11.49777 -11.30448 -11.20009 -11.13390 -11.06605 -10.96238 -10.88994 -10.77496 -10.57377 -10.48886 -10.38432 -9.80144 -8.94945 -8.54893 -8.40499 -8.38538 -7.81938 -6.81690 -6.23833 -3.93254 2.84809 3.26760 3.29548 3.37440 3.53309 3.68957 4.08803 4.37557 4.45657 4.59940 4.66170 4.76358 4.81728 4.87262 4.94112 5.00337 5.04044 5.13453 5.15620 5.16687 5.24370 5.29303 5.34985 5.39478 5.47470 5.52788 5.55458 5.57632 5.67446 5.69297 5.77213 5.79956 5.87661 5.92680 5.93866 5.96029 6.10445 6.14702 6.20549 6.28895 6.32402 6.80002 7.23836 7.63163 7.76637 7.99497 8.47150 8.83619 9.23042 10.85729 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007829 B = 0.004883 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.617544 B = 5733.211186 C = 8949.886330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.109 3.891 7 N -0.616 5.616 8 C 0.525 3.475 9 O -0.464 6.464 10 C -0.119 4.119 11 S -0.140 6.140 12 C -0.520 4.520 13 H 0.086 0.914 14 C 0.095 3.905 15 N -0.883 5.883 16 Si 0.857 3.143 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.236 1.236 20 C 0.161 3.839 21 H 0.063 0.937 22 C 0.071 3.929 23 N -0.650 5.650 24 C 0.078 3.922 25 C -0.150 4.150 26 C 0.064 3.936 27 F -0.221 7.221 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.270 0.730 40 H 0.098 0.902 41 H 0.017 0.983 42 H 0.316 0.684 43 H 0.080 0.920 44 H 0.015 0.985 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.543 -0.862 -8.195 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.175 4.175 6 C -0.014 4.014 7 N -0.353 5.353 8 C 0.312 3.688 9 O -0.335 6.335 10 C -0.270 4.270 11 S 0.086 5.914 12 C -0.667 4.667 13 H 0.104 0.896 14 C -0.113 4.113 15 N -0.520 5.520 16 Si 0.682 3.318 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.160 1.160 20 C 0.057 3.943 21 H 0.081 0.919 22 C -0.057 4.057 23 N -0.281 5.281 24 C -0.051 4.051 25 C -0.188 4.188 26 C 0.009 3.991 27 F -0.202 7.202 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.035 0.965 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.400 0.218 -6.658 23.369 hybrid contribution -0.156 -0.640 -0.581 0.878 sum -22.556 -0.422 -7.239 23.693 Atomic orbital electron populations 1.21853 0.94724 1.01866 1.01971 1.21519 0.95614 1.00403 0.94758 0.90593 1.21548 0.95484 1.00585 0.97285 1.21867 0.95876 1.01763 0.97998 1.21570 0.98968 0.96692 0.84188 1.47885 1.05188 1.63766 1.18479 1.20001 0.87733 0.79498 0.81585 1.90728 1.72481 1.37487 1.32763 1.23329 0.94637 1.04765 1.04243 1.84654 1.05464 1.75270 1.25986 1.22355 0.89820 1.43099 1.11447 0.89632 1.24705 0.94022 0.94710 0.97863 1.69942 1.00123 1.45460 1.36485 0.86728 0.80108 0.81302 0.83642 1.19266 1.20143 1.15988 1.21119 0.80677 0.98296 0.94236 0.91901 1.22186 0.96183 0.99257 0.88109 1.60672 1.61995 1.04724 1.00674 1.21613 0.96500 0.98015 0.88996 1.22109 1.04625 0.98987 0.93112 1.21928 1.01051 0.93817 0.82329 1.92758 1.95056 1.77621 1.54791 0.92286 0.92454 0.92669 0.91908 0.91816 0.90819 0.91385 0.89386 0.91957 0.89433 0.89314 0.92053 0.88373 0.96532 0.86631 0.90194 0.96715 0.91671 0.89140 0.90579 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.98 37.16 0.33 -0.72 16 2 C -0.10 -0.91 2.34 -90.50 -0.21 -1.12 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -0.87 5.17 -26.69 -0.14 -1.01 16 5 C -0.14 -1.19 6.06 -26.83 -0.16 -1.36 16 6 C 0.11 1.17 6.30 -3.93 -0.02 1.15 16 7 N -0.62 -8.03 2.98 -165.48 -0.49 -8.52 16 8 C 0.53 9.02 7.40 -10.98 -0.08 8.94 16 9 O -0.46 -8.77 9.35 5.56 0.05 -8.72 16 10 C -0.12 -2.33 4.58 36.00 0.16 -2.16 16 11 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 12 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 13 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.93 13.97 55.49 0.78 -26.15 16 16 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 20 C 0.16 1.75 2.54 -67.60 -0.17 1.58 16 21 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 22 C 0.07 0.86 4.22 -3.83 -0.02 0.85 16 23 N -0.65 -8.58 3.91 -113.78 -0.44 -9.03 16 24 C 0.08 0.97 5.30 -3.82 -0.02 0.95 16 25 C -0.15 -1.87 5.93 -26.73 -0.16 -2.03 16 26 C 0.06 0.73 7.55 37.16 0.28 1.01 16 27 F -0.22 -3.14 17.36 2.25 0.04 -3.10 16 28 H 0.06 0.43 6.44 -51.93 -0.33 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.01 5.97 -51.93 -0.31 0.70 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.63 7.43 -51.91 -0.39 1.25 16 38 H 0.09 1.70 8.13 -51.92 -0.42 1.27 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.10 1.47 6.32 -51.93 -0.33 1.14 16 41 H 0.02 0.18 6.26 -51.93 -0.32 -0.15 16 42 H 0.32 3.75 8.71 -39.29 -0.34 3.41 16 43 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -32.43 384.14 -9.33 -41.76 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.35 Total: 2.16 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.01 Total: -5.97 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.16 Total: -43.70 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.05 Total: -8.72 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.43 -9.33 -41.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271696607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds