Wall clock time and date at job start Sat Apr 11 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39897 * 109.47285 * 2 1 4 4 F 1.39906 * 109.46831 * 240.00086 * 2 1 3 5 5 C 1.50700 * 109.47268 * 120.00341 * 2 1 3 6 6 O 1.21278 * 120.00261 * 24.99646 * 5 2 1 7 7 N 1.34783 * 119.99965 * 204.99542 * 5 2 1 8 8 C 1.46497 * 119.99718 * 179.97438 * 7 5 2 9 9 C 1.53007 * 109.46774 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.32775 * 304.21404 * 9 8 7 11 11 C 1.54610 * 110.46183 * 181.90790 * 9 8 7 12 12 C 1.53989 * 103.88716 * 217.22681 * 11 9 8 13 13 C 1.53981 * 104.57651 * 0.14535 * 12 11 9 14 14 O 1.44475 * 110.36794 * 66.45423 * 9 8 7 15 15 C 1.52411 * 110.27825 * 241.63806 * 12 11 9 16 16 C 1.53289 * 109.44243 * 297.22493 * 15 12 11 17 17 N 1.46925 * 108.85195 * 306.24882 * 16 15 12 18 18 C 1.36933 * 120.59807 * 234.25835 * 17 16 15 19 19 H 1.08005 * 119.99887 * 27.58457 * 18 17 16 20 20 C 1.38810 * 120.00606 * 207.58725 * 18 17 16 21 21 N 1.31620 * 119.99480 * 17.34807 * 20 18 17 22 22 Si 1.86803 * 120.00421 * 197.34979 * 20 18 17 23 23 H 1.48500 * 109.46888 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46915 * 119.99593 * 22 20 18 25 25 H 1.48500 * 109.47145 * 239.99804 * 22 20 18 26 26 C 1.47227 * 118.61250 * 54.13858 * 17 16 15 27 27 C 1.52402 * 110.28145 * 118.66169 * 12 11 9 28 28 H 1.09008 * 109.46642 * 299.99731 * 1 2 3 29 29 H 1.08995 * 109.47173 * 59.99733 * 1 2 3 30 30 H 1.08993 * 109.47133 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99888 * 359.97438 * 7 5 2 32 32 H 1.09001 * 109.46861 * 60.00758 * 8 7 5 33 33 H 1.08997 * 109.47428 * 300.00252 * 8 7 5 34 34 H 1.08995 * 110.54191 * 98.62216 * 11 9 8 35 35 H 1.09000 * 110.54031 * 335.82465 * 11 9 8 36 36 H 1.08999 * 110.39653 * 142.42336 * 13 12 11 37 37 H 1.08998 * 110.39388 * 264.70279 * 13 12 11 38 38 H 1.08995 * 109.47783 * 177.23502 * 15 12 11 39 39 H 1.08995 * 109.48102 * 57.21651 * 15 12 11 40 40 H 1.08999 * 109.59265 * 66.09949 * 16 15 12 41 41 H 1.09004 * 109.59133 * 186.39764 * 16 15 12 42 42 H 0.97005 * 119.99962 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.53651 * 186.09891 * 26 17 16 44 44 H 1.08997 * 109.69822 * 65.75993 * 26 17 16 45 45 H 1.09003 * 109.47424 * 182.76102 * 27 12 11 46 46 H 1.09005 * 109.47710 * 302.76911 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -1.5394 1.7784 7 7 3.2545 -0.4247 1.7219 8 6 3.7425 -1.1150 2.9183 9 6 5.1450 -0.6092 3.2623 10 1 5.8122 -0.7336 2.4094 11 6 5.7022 -1.3577 4.4951 12 6 6.4803 -0.2745 5.2647 13 6 6.3060 1.0014 4.4204 14 8 5.0950 0.7778 3.6635 15 6 7.9550 -0.6485 5.3570 16 6 8.1023 -1.9502 6.1530 17 7 7.4227 -1.7953 7.4463 18 6 8.0900 -2.0360 8.6176 19 1 9.1608 -1.9037 8.6661 20 6 7.3903 -2.4502 9.7426 21 7 6.1738 -2.9373 9.6187 22 14 8.1750 -2.3161 11.4326 23 1 9.5377 -1.7408 11.3013 24 1 7.3463 -1.4355 12.2946 25 1 8.2649 -3.6659 12.0451 26 6 6.0120 -1.3739 7.4555 27 6 5.8788 -0.0761 6.6508 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.8107 0.2380 1.2834 32 1 3.7791 -2.1879 2.7292 33 1 3.0700 -0.9157 3.7526 34 1 6.3702 -2.1612 4.1850 35 1 4.8880 -1.7497 5.1047 36 1 6.1948 1.8722 5.0664 37 1 7.1558 1.1326 3.7504 38 1 8.5014 0.1491 5.8603 39 1 8.3580 -0.7882 4.3540 40 1 7.6491 -2.7714 5.5978 41 1 9.1592 -2.1599 6.3181 42 1 5.6847 -3.2264 10.4049 43 1 5.6897 -1.2019 8.4824 44 1 5.3940 -2.1494 7.0033 45 1 6.4077 0.7264 7.1651 46 1 4.8250 0.1860 6.5556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483975607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:21 Heat of formation + Delta-G solvation = -164.041085 kcal Electronic energy + Delta-G solvation = -29660.922985 eV Core-core repulsion = 25221.696850 eV Total energy + Delta-G solvation = -4439.226135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.57771 -47.57364 -40.43419 -39.73555 -36.87412 -35.21921 -33.38274 -32.02172 -31.10505 -30.73897 -29.98338 -27.03372 -26.47136 -24.29176 -23.87040 -22.37634 -21.58197 -21.04145 -20.87956 -18.90928 -18.28851 -18.17282 -17.16022 -16.80318 -16.41811 -15.88207 -15.49269 -15.45230 -14.96148 -14.85549 -14.44728 -14.38224 -14.00192 -13.88808 -13.75258 -13.69322 -13.27339 -13.09047 -13.03025 -12.84362 -12.75890 -12.51234 -12.36336 -12.17489 -11.93245 -11.39402 -11.34441 -11.00416 -10.91076 -10.75310 -10.53131 -10.33935 -10.29944 -10.16436 -9.97389 -9.68538 -9.55289 -9.51037 -9.33663 -8.48712 -6.69175 -5.81142 -3.22948 1.81752 2.27355 3.33494 3.35259 3.43510 3.45292 3.57237 3.81136 4.11826 4.14395 4.47393 4.53554 4.82280 4.95445 4.99344 5.06297 5.12243 5.13936 5.31327 5.37723 5.43672 5.45465 5.57504 5.58919 5.72862 5.78953 5.89507 5.91038 6.01810 6.05354 6.21552 6.27278 6.39823 6.57036 6.63097 6.70091 6.71622 6.88557 6.92523 6.93731 7.33942 7.51293 7.63894 7.77558 8.42489 9.18777 9.82542 10.39417 11.27286 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.773569 B =11667.909622 C =12136.648076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.281 3.719 3 F -0.188 7.188 4 F -0.183 7.183 5 C 0.483 3.517 6 O -0.503 6.503 7 N -0.703 5.703 8 C 0.123 3.877 9 C 0.062 3.938 10 H 0.072 0.928 11 C -0.134 4.134 12 C -0.076 4.076 13 C 0.053 3.947 14 O -0.373 6.373 15 C -0.121 4.121 16 C 0.145 3.855 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.170 3.830 27 C -0.126 4.126 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.410 0.590 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.018 0.982 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.019 0.981 45 H 0.056 0.944 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 7.633 -19.480 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.242 3.758 3 F -0.169 7.169 4 F -0.164 7.164 5 C 0.264 3.736 6 O -0.378 6.378 7 N -0.354 5.354 8 C 0.001 3.999 9 C 0.003 3.997 10 H 0.090 0.910 11 C -0.172 4.172 12 C -0.076 4.076 13 C -0.024 4.024 14 O -0.292 6.292 15 C -0.160 4.160 16 C 0.019 3.981 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.045 3.955 27 C -0.165 4.165 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.246 0.754 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.483 7.115 -18.987 21.613 hybrid contribution 0.961 0.355 0.607 1.191 sum -6.522 7.470 -18.380 20.884 Atomic orbital electron populations 1.22639 0.88742 1.06855 1.05780 1.21382 0.95973 0.75639 0.82836 1.93075 1.90456 1.36716 1.96662 1.93091 1.90539 1.80788 1.51976 1.20710 0.82837 0.84205 0.85882 1.90804 1.55764 1.32356 1.58852 1.45965 1.16791 1.42812 1.29822 1.21687 0.94495 0.96875 0.86864 1.23279 0.94952 0.83401 0.98022 0.90997 1.22992 1.00789 0.98437 0.94960 1.21354 0.96542 0.93219 0.96510 1.23599 0.86617 0.98825 0.93330 1.89110 1.41833 1.25826 1.72478 1.21969 0.93821 1.00899 0.99306 1.20923 0.96622 0.92849 0.87737 1.44097 1.09043 1.77835 1.00401 1.19211 0.92251 1.39051 0.87592 0.91709 1.25027 0.97149 0.98596 0.98915 1.70037 1.12401 1.43846 1.28343 0.86252 0.78723 0.77341 0.84634 1.20296 1.21564 1.21747 1.20861 0.85018 0.89953 0.99704 1.22139 0.98650 1.01770 0.93966 0.88685 0.89106 0.87995 0.75394 0.89317 0.89625 0.89933 0.89632 0.89204 0.92592 0.92059 0.93083 0.96395 0.92901 0.93684 0.89461 0.96250 0.92560 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.92 37.16 0.33 -0.96 16 2 C 0.28 2.63 2.47 -27.88 -0.07 2.56 16 3 F -0.19 -1.79 16.51 2.25 0.04 -1.75 16 4 F -0.18 -1.83 17.05 2.25 0.04 -1.79 16 5 C 0.48 5.54 7.23 -10.98 -0.08 5.46 16 6 O -0.50 -7.14 16.09 5.56 0.09 -7.05 16 7 N -0.70 -7.48 5.47 -60.29 -0.33 -7.81 16 8 C 0.12 1.42 5.29 -4.04 -0.02 1.40 16 9 C 0.06 0.72 3.33 -25.88 -0.09 0.64 16 10 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.13 -1.87 4.97 -25.37 -0.13 -1.99 16 12 C -0.08 -1.15 0.68 -154.09 -0.11 -1.25 16 13 C 0.05 0.69 6.72 37.67 0.25 0.94 16 14 O -0.37 -4.99 11.33 -35.23 -0.40 -5.39 16 15 C -0.12 -1.90 4.63 -26.88 -0.12 -2.03 16 16 C 0.15 2.86 6.19 -3.66 -0.02 2.84 16 17 N -0.59 -14.21 3.00 -171.96 -0.52 -14.73 16 18 C -0.25 -6.75 9.59 -15.06 -0.14 -6.89 16 19 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.17 3.88 5.03 -3.50 -0.02 3.86 16 27 C -0.13 -2.29 4.63 -26.89 -0.12 -2.41 16 28 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 31 H 0.41 3.78 8.03 -40.82 -0.33 3.46 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.13 6.59 -51.93 -0.34 0.79 16 35 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 36 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 37 H 0.06 0.65 7.83 -51.93 -0.41 0.25 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.02 0.36 6.86 -51.93 -0.36 0.00 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 2.29 6.02 -51.93 -0.31 1.97 16 44 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -30.41 367.79 -7.38 -37.79 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.01 Total: 1.83 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.42 Total: 2.12 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.22 Total: -47.72 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.31 Total: -12.44 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.41 -7.38 -37.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483975607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.250 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds