Wall clock time and date at job start Sat Apr 11 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39897 * 109.47285 * 2 1 4 4 F 1.39906 * 109.46831 * 240.00086 * 2 1 3 5 5 C 1.50700 * 109.47268 * 120.00341 * 2 1 3 6 6 O 1.21278 * 120.00261 * 24.99646 * 5 2 1 7 7 N 1.34783 * 119.99965 * 204.99542 * 5 2 1 8 8 C 1.46497 * 119.99718 * 179.97438 * 7 5 2 9 9 C 1.53007 * 109.46774 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.32775 * 304.21404 * 9 8 7 11 11 C 1.54610 * 110.46183 * 181.90790 * 9 8 7 12 12 C 1.53989 * 103.88716 * 217.22681 * 11 9 8 13 13 C 1.53981 * 104.57651 * 0.14535 * 12 11 9 14 14 O 1.44475 * 110.36794 * 66.45423 * 9 8 7 15 15 C 1.52411 * 110.27825 * 241.63806 * 12 11 9 16 16 C 1.53289 * 109.44243 * 297.22493 * 15 12 11 17 17 N 1.46925 * 108.85195 * 306.24882 * 16 15 12 18 18 C 1.36933 * 120.59807 * 234.25835 * 17 16 15 19 19 H 1.08005 * 119.99887 * 27.58457 * 18 17 16 20 20 C 1.38810 * 120.00606 * 207.58725 * 18 17 16 21 21 N 1.31620 * 119.99480 * 17.34807 * 20 18 17 22 22 Si 1.86803 * 120.00421 * 197.34979 * 20 18 17 23 23 H 1.48500 * 109.46888 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46915 * 119.99593 * 22 20 18 25 25 H 1.48500 * 109.47145 * 239.99804 * 22 20 18 26 26 C 1.47227 * 118.61250 * 54.13858 * 17 16 15 27 27 C 1.52402 * 110.28145 * 118.66169 * 12 11 9 28 28 H 1.09008 * 109.46642 * 299.99731 * 1 2 3 29 29 H 1.08995 * 109.47173 * 59.99733 * 1 2 3 30 30 H 1.08993 * 109.47133 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99888 * 359.97438 * 7 5 2 32 32 H 1.09001 * 109.46861 * 60.00758 * 8 7 5 33 33 H 1.08997 * 109.47428 * 300.00252 * 8 7 5 34 34 H 1.08995 * 110.54191 * 98.62216 * 11 9 8 35 35 H 1.09000 * 110.54031 * 335.82465 * 11 9 8 36 36 H 1.08999 * 110.39653 * 142.42336 * 13 12 11 37 37 H 1.08998 * 110.39388 * 264.70279 * 13 12 11 38 38 H 1.08995 * 109.47783 * 177.23502 * 15 12 11 39 39 H 1.08995 * 109.48102 * 57.21651 * 15 12 11 40 40 H 1.08999 * 109.59265 * 66.09949 * 16 15 12 41 41 H 1.09004 * 109.59133 * 186.39764 * 16 15 12 42 42 H 0.97005 * 119.99962 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.53651 * 186.09891 * 26 17 16 44 44 H 1.08997 * 109.69822 * 65.75993 * 26 17 16 45 45 H 1.09003 * 109.47424 * 182.76102 * 27 12 11 46 46 H 1.09005 * 109.47710 * 302.76911 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -1.5394 1.7784 7 7 3.2545 -0.4247 1.7219 8 6 3.7425 -1.1150 2.9183 9 6 5.1450 -0.6092 3.2623 10 1 5.8122 -0.7336 2.4094 11 6 5.7022 -1.3577 4.4951 12 6 6.4803 -0.2745 5.2647 13 6 6.3060 1.0014 4.4204 14 8 5.0950 0.7778 3.6635 15 6 7.9550 -0.6485 5.3570 16 6 8.1023 -1.9502 6.1530 17 7 7.4227 -1.7953 7.4463 18 6 8.0900 -2.0360 8.6176 19 1 9.1608 -1.9037 8.6661 20 6 7.3903 -2.4502 9.7426 21 7 6.1738 -2.9373 9.6187 22 14 8.1750 -2.3161 11.4326 23 1 9.5377 -1.7408 11.3013 24 1 7.3463 -1.4355 12.2946 25 1 8.2649 -3.6659 12.0451 26 6 6.0120 -1.3739 7.4555 27 6 5.8788 -0.0761 6.6508 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.8107 0.2380 1.2834 32 1 3.7791 -2.1879 2.7292 33 1 3.0700 -0.9157 3.7526 34 1 6.3702 -2.1612 4.1850 35 1 4.8880 -1.7497 5.1047 36 1 6.1948 1.8722 5.0664 37 1 7.1558 1.1326 3.7504 38 1 8.5014 0.1491 5.8603 39 1 8.3580 -0.7882 4.3540 40 1 7.6491 -2.7714 5.5978 41 1 9.1592 -2.1599 6.3181 42 1 5.6847 -3.2264 10.4049 43 1 5.6897 -1.2019 8.4824 44 1 5.3940 -2.1494 7.0033 45 1 6.4077 0.7264 7.1651 46 1 4.8250 0.1860 6.5556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483975607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:20 Heat of formation + Delta-G solvation = -183.813476 kcal Electronic energy + Delta-G solvation = -29661.780380 eV Core-core repulsion = 25221.696850 eV Total energy + Delta-G solvation = -4440.083530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.32792 -48.32308 -41.53558 -40.74875 -38.32093 -36.23574 -35.03932 -32.77193 -32.68106 -31.86053 -31.58960 -28.49359 -27.56723 -25.58212 -25.09778 -23.92712 -22.72700 -22.34469 -21.88679 -19.81800 -19.72040 -18.93484 -18.52526 -17.95730 -17.40682 -16.88234 -16.77678 -16.56504 -16.44653 -15.91558 -15.63587 -15.44978 -15.34396 -15.13110 -14.82102 -14.64315 -14.63680 -14.52331 -14.05029 -13.85282 -13.56876 -13.47452 -13.36255 -13.24899 -13.08988 -13.01030 -12.87162 -12.61347 -12.43914 -12.21877 -12.11325 -11.90759 -11.85267 -11.55758 -11.23066 -11.08258 -11.00821 -10.64194 -10.50497 -10.44817 -8.65625 -7.87153 -5.31188 0.92477 1.43932 1.44360 1.46736 1.56633 2.50715 2.56449 2.80405 2.89834 3.26540 3.37699 3.44353 3.49303 3.70844 3.74007 3.88370 3.99435 4.07413 4.23762 4.39675 4.48785 4.50463 4.53403 4.56870 4.63217 4.71598 4.74526 4.83744 4.84336 4.90508 4.93207 4.97879 5.05941 5.07262 5.25039 5.29738 5.33847 5.42759 5.52865 5.65171 5.78937 5.87143 6.03104 6.39614 6.66480 7.15531 7.88400 8.39530 9.18813 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.773569 B =11667.909622 C =12136.648076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.287 3.713 3 F -0.187 7.187 4 F -0.186 7.186 5 C 0.479 3.521 6 O -0.535 6.535 7 N -0.695 5.695 8 C 0.125 3.875 9 C 0.074 3.926 10 H 0.101 0.899 11 C -0.134 4.134 12 C -0.076 4.076 13 C 0.061 3.939 14 O -0.383 6.383 15 C -0.108 4.108 16 C 0.139 3.861 17 N -0.610 5.610 18 C -0.258 4.258 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.179 3.821 27 C -0.113 4.113 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.419 0.581 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.050 0.950 42 H 0.248 0.752 43 H 0.046 0.954 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 9.107 -21.715 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.247 3.753 3 F -0.168 7.168 4 F -0.167 7.167 5 C 0.261 3.739 6 O -0.412 6.412 7 N -0.347 5.347 8 C 0.002 3.998 9 C 0.016 3.984 10 H 0.119 0.881 11 C -0.172 4.172 12 C -0.077 4.077 13 C -0.016 4.016 14 O -0.302 6.302 15 C -0.147 4.147 16 C 0.014 3.986 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.221 1.221 26 C 0.054 3.946 27 C -0.152 4.152 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.257 0.743 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.484 8.621 -21.263 23.843 hybrid contribution 0.682 -0.144 1.284 1.461 sum -5.802 8.477 -19.979 22.465 Atomic orbital electron populations 1.22703 0.86898 1.07168 1.07131 1.21361 0.97059 0.75226 0.81606 1.93079 1.90597 1.36544 1.96590 1.93088 1.90719 1.80914 1.51956 1.21131 0.82632 0.83828 0.86326 1.90791 1.56610 1.33820 1.60012 1.45921 1.16748 1.42661 1.29342 1.21582 0.94246 0.97255 0.86685 1.23249 0.95192 0.82248 0.97678 0.88086 1.22929 1.00125 0.98494 0.95625 1.21309 0.96101 0.95285 0.94974 1.23550 0.87432 0.97185 0.93403 1.89114 1.42225 1.26405 1.72465 1.21830 0.94223 0.98177 1.00436 1.21119 0.95941 0.95255 0.86307 1.44359 1.09378 1.78192 1.01400 1.19537 0.92528 1.37811 0.88923 0.91621 1.25759 0.97795 0.99081 1.02198 1.70191 1.13787 1.45432 1.28728 0.85270 0.78280 0.76846 0.80449 1.19019 1.21883 1.22066 1.20611 0.84399 0.91656 0.97958 1.21919 0.99285 0.98586 0.95392 0.88302 0.86829 0.88221 0.74333 0.88955 0.91546 0.89348 0.91948 0.89003 0.89838 0.92336 0.89300 0.96331 0.93109 0.94281 0.93548 0.98250 0.93110 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.92 71.98 0.64 -1.62 16 2 C 0.29 4.88 2.47 29.85 0.07 4.96 16 3 F -0.19 -3.15 16.51 44.97 0.74 -2.41 16 4 F -0.19 -3.39 17.05 44.97 0.77 -2.62 16 5 C 0.48 10.47 7.23 87.66 0.63 11.10 16 6 O -0.54 -15.04 16.09 -3.02 -0.05 -15.09 16 7 N -0.70 -13.62 5.47 -463.05 -2.53 -16.16 16 8 C 0.13 2.73 5.29 86.38 0.46 3.19 16 9 C 0.07 1.54 3.33 31.14 0.10 1.64 16 10 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 11 C -0.13 -3.52 4.97 31.48 0.16 -3.36 16 12 C -0.08 -2.15 0.68 -51.91 -0.04 -2.19 16 13 C 0.06 1.37 6.72 72.31 0.49 1.86 16 14 O -0.38 -9.08 11.33 -148.98 -1.69 -10.76 16 15 C -0.11 -3.10 4.63 30.50 0.14 -2.96 16 16 C 0.14 5.34 6.19 86.39 0.54 5.87 16 17 N -0.61 -29.73 3.00 -697.96 -2.09 -31.82 16 18 C -0.26 -14.02 9.59 84.03 0.81 -13.22 16 19 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.93 -55.56 11.19 21.65 0.24 -55.32 16 22 Si 0.96 44.97 29.59 68.60 2.03 46.99 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 C 0.18 8.48 5.03 86.34 0.43 8.91 16 27 C -0.11 -4.09 4.63 30.49 0.14 -3.94 16 28 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.31 7.87 -2.39 -0.02 1.29 16 31 H 0.42 6.67 8.03 -92.71 -0.74 5.93 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.23 6.59 -2.39 -0.02 2.21 16 35 H 0.06 1.95 6.34 -2.39 -0.02 1.93 16 36 H 0.09 2.08 7.85 -2.39 -0.02 2.06 16 37 H 0.08 1.51 7.83 -2.39 -0.02 1.49 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.95 8.13 -2.39 -0.02 1.93 16 40 H 0.02 0.72 6.86 -2.39 -0.02 0.70 16 41 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 42 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 43 H 0.05 2.56 6.02 -2.39 -0.01 2.54 16 44 H 0.00 -0.03 6.87 -2.39 -0.02 -0.04 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -67.42 367.79 2.67 -64.76 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.25 Total: 14.75 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 4.99 Total: 7.68 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.38 Total: -103.30 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.74 Total: -25.85 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 1.51 Total: -5.03 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.42 2.67 -64.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483975607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.056 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds