Wall clock time and date at job start Sat Apr 11 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00226 * 2 1 4 4 H 1.48497 * 109.47013 * 89.99916 * 3 2 1 5 5 H 1.48498 * 109.47264 * 209.99976 * 3 2 1 6 6 H 1.48499 * 109.46878 * 330.00142 * 3 2 1 7 7 C 1.38952 * 119.99630 * 179.72232 * 2 1 3 8 8 H 1.07998 * 120.00176 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99969 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00383 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99723 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00234 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.47173 * 173.73454 * 12 10 9 14 14 C 1.46845 * 110.99965 * 169.39519 * 13 12 10 15 15 C 1.53035 * 109.52102 * 185.83632 * 14 13 12 16 16 C 1.53118 * 109.28099 * 300.82301 * 15 14 13 17 17 C 1.53121 * 109.15768 * 57.65537 * 16 15 14 18 18 C 1.53004 * 109.50442 * 62.28643 * 17 16 15 19 19 O 1.42907 * 109.46943 * 60.19421 * 18 17 16 20 20 C 1.53004 * 109.53240 * 182.38353 * 17 16 15 21 21 C 1.50697 * 109.47129 * 299.82296 * 20 17 16 22 22 C 1.38237 * 120.00065 * 269.72843 * 21 20 17 23 23 C 1.38236 * 119.99998 * 179.78870 * 22 21 20 24 24 C 1.38233 * 120.00061 * 0.46236 * 23 22 21 25 25 C 1.38236 * 119.99801 * 359.76662 * 24 23 22 26 26 C 1.38230 * 120.00259 * 0.02562 * 25 24 23 27 27 C 1.46839 * 110.99776 * 293.61137 * 13 12 10 28 28 H 0.96998 * 119.99843 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99594 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46793 * 293.72979 * 12 10 9 31 31 H 1.08993 * 109.47049 * 53.73496 * 12 10 9 32 32 H 1.09000 * 109.46655 * 305.86067 * 14 13 12 33 33 H 1.09000 * 109.45844 * 65.82491 * 14 13 12 34 34 H 1.08998 * 109.50182 * 180.88185 * 15 14 13 35 35 H 1.09000 * 109.50325 * 60.76757 * 15 14 13 36 36 H 1.08997 * 109.52139 * 297.74903 * 16 15 14 37 37 H 1.09005 * 109.52047 * 177.55643 * 16 15 14 38 38 H 1.08996 * 109.47285 * 180.19620 * 18 17 16 39 39 H 1.09001 * 109.47164 * 300.19598 * 18 17 16 40 40 H 0.96699 * 113.99299 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.47061 * 59.82536 * 20 17 16 42 42 H 1.09001 * 109.46847 * 179.82264 * 20 17 16 43 43 H 1.08007 * 119.99912 * 0.02562 * 22 21 20 44 44 H 1.08003 * 119.99882 * 180.24906 * 23 22 21 45 45 H 1.07997 * 119.99788 * 179.79047 * 24 23 22 46 46 H 1.07997 * 119.99732 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.00604 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.46115 * 294.17455 * 27 13 12 49 49 H 1.09004 * 109.46883 * 54.14225 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4401 -0.7000 6 1 1.4456 2.6526 -0.7000 7 6 2.0088 -1.2034 0.0058 8 1 1.4688 -2.1387 0.0099 9 7 3.3798 -1.2035 0.0053 10 6 4.0537 -2.3706 0.0115 11 8 3.4472 -3.4210 0.0170 12 6 5.5607 -2.3707 0.0115 13 7 6.0503 -3.7466 0.1699 14 6 7.4962 -3.8222 -0.0753 15 6 7.9442 -5.2852 -0.0452 16 6 7.6071 -5.8891 1.3209 17 6 6.1027 -5.7541 1.5725 18 6 5.3343 -6.5443 0.5113 19 8 5.7034 -7.9230 0.5838 20 6 5.7652 -6.3014 2.9609 21 6 6.1541 -7.7554 3.0359 22 6 5.2416 -8.7338 2.6881 23 6 5.5998 -10.0674 2.7528 24 6 6.8673 -10.4230 3.1742 25 6 7.7783 -9.4447 3.5265 26 6 7.4216 -8.1110 3.4578 27 6 5.7080 -4.2776 1.4955 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0012 30 1 5.9240 -1.9621 -0.9315 31 1 5.9240 -1.7584 0.8368 32 1 7.7219 -3.3932 -1.0516 33 1 8.0252 -3.2644 0.6974 34 1 9.0200 -5.3398 -0.2117 35 1 7.4258 -5.8407 -0.8267 36 1 8.1557 -5.3586 2.0991 37 1 7.8851 -6.9431 1.3318 38 1 4.2635 -6.4450 0.6888 39 1 5.5762 -6.1549 -0.4776 40 1 5.2540 -8.4848 -0.0623 41 1 6.3139 -5.7391 3.7164 42 1 4.6946 -6.2019 3.1402 43 1 4.2500 -8.4562 2.3623 44 1 4.8881 -10.8316 2.4772 45 1 7.1460 -11.4650 3.2279 46 1 8.7685 -9.7226 3.8562 47 1 8.1331 -7.3468 3.7334 48 1 6.2454 -3.7176 2.2608 49 1 4.6350 -4.1794 1.6602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361592721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:13:03 Heat of formation + Delta-G solvation = -48.145360 kcal Electronic energy + Delta-G solvation = -29762.536610 eV Core-core repulsion = 25882.565621 eV Total energy + Delta-G solvation = -3879.970990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35921 -38.89960 -37.93463 -36.18629 -34.30127 -33.87219 -32.28697 -31.65737 -30.69959 -30.62908 -27.61733 -26.19759 -25.62335 -24.58409 -22.91091 -22.28972 -21.98269 -20.57033 -19.34509 -18.41466 -18.25812 -17.09070 -16.58456 -16.10869 -15.70678 -15.28406 -15.12354 -14.89271 -14.84199 -14.48521 -14.09202 -13.88677 -13.66075 -13.50767 -13.26970 -13.12637 -12.76280 -12.58321 -12.52865 -12.38165 -12.27042 -11.97017 -11.90466 -11.64196 -11.46621 -11.16001 -11.06351 -10.88386 -10.78769 -10.60980 -10.42102 -10.18457 -10.03282 -9.97729 -9.70528 -9.52964 -8.63467 -8.54708 -8.19719 -8.18370 -7.93443 -6.32265 -3.83478 1.55596 1.64326 3.01386 3.05508 3.13947 3.73813 3.85837 4.03514 4.09325 4.42804 4.68474 4.83217 4.90577 4.99148 5.05159 5.08881 5.12252 5.19697 5.22759 5.30423 5.42135 5.51642 5.53877 5.61758 5.63677 5.67576 5.75130 5.77575 5.81412 5.88601 5.90395 5.95332 5.96478 6.06681 6.14958 6.16162 6.20921 6.23921 6.31532 6.49750 6.55907 6.62651 6.67297 6.87714 7.18341 7.21994 7.33926 7.58152 7.86534 8.13519 8.59572 8.94407 9.41802 9.82997 10.80918 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002861 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.581211 B = 9782.841104 C =10471.948493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.558 6.558 12 C 0.043 3.957 13 N -0.513 5.513 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.036 4.036 18 C 0.091 3.909 19 O -0.559 6.559 20 C -0.073 4.073 21 C -0.054 4.054 22 C -0.051 4.051 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.116 4.116 27 C 0.063 3.937 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.363 0.637 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.028 0.972 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.609 -13.198 4.276 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.439 6.439 12 C -0.089 4.089 13 N -0.237 5.237 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.037 4.037 18 C 0.013 3.987 19 O -0.364 6.364 20 C -0.111 4.111 21 C -0.054 4.054 22 C -0.070 4.070 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.135 4.135 27 C -0.065 4.065 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.210 0.790 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.047 0.953 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.129 -13.833 4.404 22.454 hybrid contribution 0.658 1.931 -0.021 2.040 sum 17.788 -11.902 4.384 21.847 Atomic orbital electron populations 1.69619 1.05634 1.27470 1.49491 1.25034 0.95477 0.97951 0.97712 0.86684 0.79801 0.84130 0.78847 1.19689 1.19504 1.20202 1.19411 0.79221 0.96566 1.47995 0.86289 1.42240 1.07530 1.06189 1.67269 1.19655 0.88080 0.84521 0.83899 1.90530 1.69336 1.30771 1.53296 1.21892 0.95529 0.89707 1.01731 1.61459 1.12643 1.19507 1.30092 1.22144 0.87786 0.97035 1.00458 1.21596 0.99937 0.95296 0.98457 1.21663 0.94733 1.01715 0.96380 1.20496 0.95513 0.93880 0.93784 1.22087 0.97363 0.80539 0.98674 1.86784 1.70817 1.19125 1.59710 1.20637 1.01854 0.92206 0.96395 1.19541 0.93653 0.94809 0.97399 1.20735 0.98959 0.92101 0.95166 1.20971 0.96477 0.96086 1.01750 1.20950 0.94208 0.98613 1.00753 1.20923 0.99091 0.93169 1.02049 1.20894 0.95956 0.95785 1.00815 1.22224 1.03129 0.92826 0.88306 0.91635 0.79779 0.89156 0.93603 0.91006 0.95367 0.92029 0.90902 0.93034 0.90419 0.93532 0.92132 0.79036 0.91508 0.90836 0.86898 0.87017 0.87218 0.87151 0.87127 0.95342 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.45 9.93 7.31 -10.99 -0.08 9.85 16 11 O -0.56 -14.16 14.29 5.55 0.08 -14.08 16 12 C 0.04 0.70 5.45 -4.97 -0.03 0.67 16 13 N -0.51 -7.84 3.63 -236.12 -0.86 -8.70 16 14 C 0.05 0.66 5.46 -3.84 -0.02 0.64 16 15 C -0.12 -1.30 5.74 -26.65 -0.15 -1.46 16 16 C -0.11 -1.25 4.00 -26.61 -0.11 -1.36 16 17 C -0.04 -0.47 0.51 -154.42 -0.08 -0.55 16 18 C 0.09 1.23 5.34 37.16 0.20 1.43 16 19 O -0.56 -6.48 7.74 -35.23 -0.27 -6.75 16 20 C -0.07 -0.90 4.46 -27.88 -0.12 -1.02 16 21 C -0.05 -0.64 3.48 -104.62 -0.36 -1.01 16 22 C -0.05 -0.60 6.37 -39.58 -0.25 -0.85 16 23 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 26 C -0.12 -1.32 7.95 -39.58 -0.31 -1.63 16 27 C 0.06 0.95 3.84 -3.84 -0.01 0.94 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 30 H 0.09 1.31 7.98 -51.93 -0.41 0.90 16 31 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.96 5.85 -51.93 -0.30 0.66 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 40 H 0.36 3.20 9.12 45.56 0.42 3.62 16 41 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 43 H 0.11 1.30 7.87 -52.48 -0.41 0.89 16 44 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.11 0.94 8.06 -52.49 -0.42 0.51 16 46 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.11 1.13 8.03 -52.49 -0.42 0.71 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 1.84 6.06 -51.93 -0.31 1.52 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -31.43 375.01 -9.13 -40.56 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.96 Total: 14.79 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.78 Total: -7.30 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.14 Total: -47.37 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.19 Total: -20.83 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.43 -9.13 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361592721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds