Wall clock time and date at job start Sat Apr 11 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.34949 * 126.03736 * 124.97306 * 3 2 1 5 5 C 1.35324 * 107.74316 * 179.75202 * 4 3 2 6 6 C 1.39872 * 107.91740 * 0.39475 * 5 4 3 7 7 C 1.50704 * 125.89482 * 179.86553 * 6 5 4 8 8 N 1.46501 * 109.47077 * 94.71485 * 7 6 5 9 9 C 1.34773 * 120.00026 * 180.02562 * 8 7 6 10 10 O 1.21595 * 119.99822 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00158 * 179.97438 * 9 8 7 12 12 C 1.40196 * 120.00000 * 180.02562 * 11 9 8 13 13 C 1.40396 * 125.97439 * 0.27024 * 12 11 9 14 14 C 1.35244 * 107.86945 * 180.17767 * 13 12 11 15 15 C 1.50703 * 126.07226 * 179.88542 * 14 13 12 16 16 N 1.34968 * 107.85703 * 359.61998 * 14 13 12 17 17 C 1.46496 * 125.97396 * 180.24284 * 16 14 13 18 18 C 1.50702 * 109.47079 * 90.00325 * 17 16 14 19 19 H 1.08002 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00327 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99450 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47085 * 89.99684 * 22 20 18 24 24 H 1.48494 * 109.47187 * 210.00073 * 22 20 18 25 25 H 1.48505 * 109.46961 * 329.99820 * 22 20 18 26 26 N 1.31217 * 125.97157 * 180.02562 * 12 11 9 27 27 N 1.30833 * 108.20680 * 359.59945 * 6 5 4 28 28 H 1.08995 * 109.47379 * 300.00256 * 1 2 3 29 29 H 1.09008 * 109.47032 * 60.00275 * 1 2 3 30 30 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47441 * 239.99465 * 2 1 3 32 32 H 1.09008 * 109.47032 * 119.99725 * 2 1 3 33 33 H 1.07990 * 126.12935 * 359.97438 * 4 3 2 34 34 H 1.07999 * 126.03607 * 180.27444 * 5 4 3 35 35 H 1.08998 * 109.46710 * 334.71579 * 7 6 5 36 36 H 1.08998 * 109.46948 * 214.71544 * 7 6 5 37 37 H 0.97004 * 120.00070 * 359.97438 * 8 7 6 38 38 H 0.97004 * 119.99938 * 0.02562 * 11 9 8 39 39 H 1.08001 * 126.06931 * 0.03580 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68666 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.68766 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.68747 * 15 14 13 43 43 H 1.08997 * 109.47352 * 209.99655 * 17 16 14 44 44 H 1.09001 * 109.47699 * 330.00018 * 17 16 14 45 45 H 0.97001 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0758 3.2122 0.5429 6 6 2.3125 3.4723 -0.6000 7 6 2.2361 4.7881 -1.3308 8 7 3.1980 4.7895 -2.4358 9 6 3.3071 5.8708 -3.2329 10 8 2.6069 6.8450 -3.0351 11 7 4.1924 5.8723 -4.2491 12 6 4.3062 6.9973 -5.0779 13 6 3.5685 8.1860 -4.9607 14 6 3.9678 9.0211 -5.9467 15 6 3.4396 10.4093 -6.2019 16 7 4.9274 8.3928 -6.6579 17 6 5.6390 8.9410 -7.8152 18 6 6.8749 9.6658 -7.3479 19 1 7.1069 9.7136 -6.2942 20 6 7.7095 10.2678 -8.2655 21 7 7.4272 10.2091 -9.5487 22 14 9.2411 11.1667 -7.6863 23 1 10.3836 10.2193 -7.6405 24 1 9.5521 12.2722 -8.6277 25 1 9.0051 11.7234 -6.3299 26 7 5.1241 7.1250 -6.0960 27 7 1.6808 2.3746 -0.9283 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3177 1.4130 1.7368 34 1 3.7130 3.9174 1.0557 35 1 2.4719 5.6000 -0.6428 36 1 1.2295 4.9267 -1.7251 37 1 3.7569 4.0124 -2.5933 38 1 4.7507 5.0949 -4.4071 39 1 2.8142 8.3955 -4.2167 40 1 2.5948 10.3561 -6.8888 41 1 4.2266 11.0225 -6.6409 42 1 3.1152 10.8534 -5.2608 43 1 5.9250 8.1292 -8.4839 44 1 4.9886 9.6366 -8.3456 45 1 8.0145 10.6324 -10.1943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414434708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:51 Heat of formation + Delta-G solvation = 129.848656 kcal Electronic energy + Delta-G solvation = -26786.791694 eV Core-core repulsion = 22843.291511 eV Total energy + Delta-G solvation = -3943.500182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63268 -40.66252 -39.48862 -35.80201 -34.71087 -34.22463 -33.29844 -31.45885 -30.97850 -30.61770 -29.84108 -27.30165 -26.37180 -26.16351 -23.63083 -22.95011 -21.56109 -21.50871 -20.32739 -19.68470 -19.49592 -17.88887 -17.28890 -16.63644 -16.33918 -15.83007 -15.61545 -15.47135 -14.89352 -14.67830 -14.59111 -14.26964 -14.16553 -13.86640 -13.78363 -13.16388 -12.94541 -12.84061 -12.57865 -12.47496 -12.42688 -12.24696 -12.04878 -11.89627 -11.60930 -11.34915 -11.04155 -10.96065 -10.80470 -10.38443 -10.21477 -10.01488 -9.75721 -9.55920 -9.48084 -9.16588 -8.97687 -8.60686 -7.83776 -7.33000 -6.21465 -4.28970 1.42350 2.00909 2.13899 2.71191 2.77499 3.17374 3.24439 3.30518 3.35658 3.74346 3.90913 3.93633 4.31492 4.32695 4.37285 4.44086 4.46181 4.64810 4.86439 5.08043 5.11898 5.21767 5.31659 5.40782 5.47106 5.54220 5.59123 5.73576 5.79039 6.01703 6.16970 6.21165 6.26684 6.31575 6.56224 6.59310 6.66833 6.71513 7.01814 7.10858 7.20580 7.30987 7.60332 7.71694 7.93778 8.02140 8.14130 8.66601 8.73952 8.81831 9.37180 10.85561 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.001833 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.834907 B =15268.152088 C =15598.453885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 N -0.370 5.370 4 C 0.051 3.949 5 C -0.255 4.255 6 C 0.053 3.947 7 C 0.226 3.774 8 N -0.739 5.739 9 C 0.716 3.284 10 O -0.566 6.566 11 N -0.643 5.643 12 C 0.283 3.717 13 C -0.288 4.288 14 C 0.091 3.909 15 C -0.088 4.088 16 N -0.319 5.319 17 C 0.259 3.741 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 N -0.325 5.325 27 N -0.272 5.272 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.398 0.602 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 -18.711 20.741 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 N -0.153 5.153 4 C -0.095 4.095 5 C -0.285 4.285 6 C -0.113 4.113 7 C 0.100 3.900 8 N -0.396 5.396 9 C 0.415 3.585 10 O -0.441 6.441 11 N -0.293 5.293 12 C 0.030 3.970 13 C -0.319 4.319 14 C -0.041 4.041 15 C -0.146 4.146 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.155 5.155 27 N -0.096 5.096 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.192 0.808 34 H 0.169 0.831 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.232 0.768 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.182 -18.985 19.150 29.589 hybrid contribution 1.571 0.145 1.197 1.981 sum -10.611 -18.839 20.347 29.690 Atomic orbital electron populations 1.22064 0.93610 1.02998 1.03766 1.21731 0.96278 0.77280 1.03875 1.48802 1.35412 1.10110 1.20971 1.22592 0.95535 0.95000 0.96375 1.21470 1.08774 0.96737 1.01524 1.22259 0.97509 0.94781 0.96742 1.19305 0.93567 0.90294 0.86833 1.44925 1.44017 1.17737 1.32950 1.15533 0.80616 0.83234 0.79128 1.90879 1.46846 1.33436 1.72935 1.41366 1.41142 1.16863 1.29945 1.18656 0.97532 0.87930 0.92919 1.21246 1.10811 0.93606 1.06280 1.21055 0.92769 0.96341 0.93922 1.20370 1.01200 0.90597 1.02474 1.48947 1.27741 1.08581 1.24868 1.19664 0.91797 0.94421 0.80020 1.21348 1.07308 1.34452 0.94245 0.91730 1.24929 0.98211 0.96035 0.94646 1.69923 1.38276 1.44052 1.00753 0.86361 0.82484 0.79192 0.78682 1.20395 1.20912 1.19647 1.77244 1.24044 1.01779 1.12471 1.77349 1.22828 0.96558 1.12851 0.92042 0.90910 0.90613 0.89615 0.88565 0.80829 0.83150 0.89229 0.89928 0.76830 0.75951 0.82180 0.91149 0.89984 0.90634 0.93066 0.92815 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.10 37.15 0.38 -0.36 16 2 C 0.13 0.55 7.23 -4.05 -0.03 0.52 16 3 N -0.37 -2.80 3.68 -61.37 -0.23 -3.03 16 4 C 0.05 0.32 11.45 -17.22 -0.20 0.13 16 5 C -0.26 -2.01 10.74 -40.01 -0.43 -2.44 16 6 C 0.05 0.52 6.59 -82.40 -0.54 -0.03 16 7 C 0.23 2.34 6.23 -5.19 -0.03 2.30 16 8 N -0.74 -8.35 5.55 -66.41 -0.37 -8.71 16 9 C 0.72 11.11 8.53 -86.93 -0.74 10.37 16 10 O -0.57 -10.60 13.47 5.28 0.07 -10.53 16 11 N -0.64 -10.54 5.45 -15.51 -0.08 -10.62 16 12 C 0.28 5.98 8.11 -154.36 -1.25 4.73 16 13 C -0.29 -6.16 9.52 -39.84 -0.38 -6.54 16 14 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 15 C -0.09 -1.55 9.89 36.01 0.36 -1.20 16 16 N -0.32 -7.75 3.59 -58.33 -0.21 -7.96 16 17 C 0.26 6.75 5.81 -5.20 -0.03 6.72 16 18 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 22 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.32 -7.70 12.59 31.44 0.40 -7.31 16 27 N -0.27 -2.83 12.42 33.67 0.42 -2.42 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.14 8.07 -51.92 -0.42 -0.28 16 33 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 3.70 8.48 -40.82 -0.35 3.35 16 38 H 0.41 5.40 8.84 -40.82 -0.36 5.04 16 39 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.38 7.65 -51.93 -0.40 0.99 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -35.26 389.03 -8.75 -44.01 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.43 Total: 6.91 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -3.89 Total: 2.05 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.66 Total: -64.60 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.26 -8.75 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414434708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.856 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds