Wall clock time and date at job start Sat Apr 11 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.34949 * 126.03736 * 124.97306 * 3 2 1 5 5 C 1.35324 * 107.74316 * 179.75202 * 4 3 2 6 6 C 1.39872 * 107.91740 * 0.39475 * 5 4 3 7 7 C 1.50704 * 125.89482 * 179.86553 * 6 5 4 8 8 N 1.46501 * 109.47077 * 94.71485 * 7 6 5 9 9 C 1.34773 * 120.00026 * 180.02562 * 8 7 6 10 10 O 1.21595 * 119.99822 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00158 * 179.97438 * 9 8 7 12 12 C 1.40196 * 120.00000 * 180.02562 * 11 9 8 13 13 C 1.40396 * 125.97439 * 0.27024 * 12 11 9 14 14 C 1.35244 * 107.86945 * 180.17767 * 13 12 11 15 15 C 1.50703 * 126.07226 * 179.88542 * 14 13 12 16 16 N 1.34968 * 107.85703 * 359.61998 * 14 13 12 17 17 C 1.46496 * 125.97396 * 180.24284 * 16 14 13 18 18 C 1.50702 * 109.47079 * 90.00325 * 17 16 14 19 19 H 1.08002 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00327 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99450 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47085 * 89.99684 * 22 20 18 24 24 H 1.48494 * 109.47187 * 210.00073 * 22 20 18 25 25 H 1.48505 * 109.46961 * 329.99820 * 22 20 18 26 26 N 1.31217 * 125.97157 * 180.02562 * 12 11 9 27 27 N 1.30833 * 108.20680 * 359.59945 * 6 5 4 28 28 H 1.08995 * 109.47379 * 300.00256 * 1 2 3 29 29 H 1.09008 * 109.47032 * 60.00275 * 1 2 3 30 30 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47441 * 239.99465 * 2 1 3 32 32 H 1.09008 * 109.47032 * 119.99725 * 2 1 3 33 33 H 1.07990 * 126.12935 * 359.97438 * 4 3 2 34 34 H 1.07999 * 126.03607 * 180.27444 * 5 4 3 35 35 H 1.08998 * 109.46710 * 334.71579 * 7 6 5 36 36 H 1.08998 * 109.46948 * 214.71544 * 7 6 5 37 37 H 0.97004 * 120.00070 * 359.97438 * 8 7 6 38 38 H 0.97004 * 119.99938 * 0.02562 * 11 9 8 39 39 H 1.08001 * 126.06931 * 0.03580 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68666 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.68766 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.68747 * 15 14 13 43 43 H 1.08997 * 109.47352 * 209.99655 * 17 16 14 44 44 H 1.09001 * 109.47699 * 330.00018 * 17 16 14 45 45 H 0.97001 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0758 3.2122 0.5429 6 6 2.3125 3.4723 -0.6000 7 6 2.2361 4.7881 -1.3308 8 7 3.1980 4.7895 -2.4358 9 6 3.3071 5.8708 -3.2329 10 8 2.6069 6.8450 -3.0351 11 7 4.1924 5.8723 -4.2491 12 6 4.3062 6.9973 -5.0779 13 6 3.5685 8.1860 -4.9607 14 6 3.9678 9.0211 -5.9467 15 6 3.4396 10.4093 -6.2019 16 7 4.9274 8.3928 -6.6579 17 6 5.6390 8.9410 -7.8152 18 6 6.8749 9.6658 -7.3479 19 1 7.1069 9.7136 -6.2942 20 6 7.7095 10.2678 -8.2655 21 7 7.4272 10.2091 -9.5487 22 14 9.2411 11.1667 -7.6863 23 1 10.3836 10.2193 -7.6405 24 1 9.5521 12.2722 -8.6277 25 1 9.0051 11.7234 -6.3299 26 7 5.1241 7.1250 -6.0960 27 7 1.6808 2.3746 -0.9283 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3177 1.4130 1.7368 34 1 3.7130 3.9174 1.0557 35 1 2.4719 5.6000 -0.6428 36 1 1.2295 4.9267 -1.7251 37 1 3.7569 4.0124 -2.5933 38 1 4.7507 5.0949 -4.4071 39 1 2.8142 8.3955 -4.2167 40 1 2.5948 10.3561 -6.8888 41 1 4.2266 11.0225 -6.6409 42 1 3.1152 10.8534 -5.2608 43 1 5.9250 8.1292 -8.4839 44 1 4.9886 9.6366 -8.3456 45 1 8.0145 10.6324 -10.1943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414434708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:51 Heat of formation + Delta-G solvation = 105.911922 kcal Electronic energy + Delta-G solvation = -26787.829668 eV Core-core repulsion = 22843.291511 eV Total energy + Delta-G solvation = -3944.538157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33366 -42.15924 -40.86485 -36.76268 -36.11681 -35.30711 -34.91481 -33.00724 -32.59094 -31.51773 -30.46257 -28.70514 -27.87604 -27.60167 -24.99352 -24.01926 -22.87728 -22.07035 -21.45159 -21.10612 -20.70441 -19.10796 -18.75270 -18.00023 -17.66135 -17.16904 -16.84289 -16.46470 -16.21724 -15.95338 -15.75580 -15.58660 -15.17091 -14.91676 -14.63042 -14.33690 -14.27950 -14.01295 -13.77323 -13.59762 -13.54370 -13.34702 -13.13733 -13.07327 -12.92439 -12.81018 -12.67510 -12.26623 -12.23615 -12.07918 -11.58191 -11.54652 -11.33272 -11.17911 -10.72130 -10.36141 -10.24411 -9.53768 -9.53472 -9.05559 -8.30638 -6.48491 0.74097 1.04803 1.17006 1.39139 1.39792 1.51414 1.59008 1.68081 1.74138 2.22850 2.37967 2.40361 2.98547 3.20361 3.42152 3.80188 3.89229 4.03355 4.11084 4.18553 4.27869 4.38115 4.49231 4.56600 4.68280 4.79688 4.80801 4.81343 4.85990 4.89597 4.94435 4.99602 5.04593 5.11015 5.14444 5.22593 5.23729 5.40756 5.55793 5.62148 5.82817 5.84791 5.99481 6.16056 6.30041 6.63585 6.70567 6.73521 7.13603 7.22355 7.40482 8.74965 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.001833 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.834907 B =15268.152088 C =15598.453885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.370 5.370 4 C 0.062 3.938 5 C -0.272 4.272 6 C 0.042 3.958 7 C 0.228 3.772 8 N -0.717 5.717 9 C 0.716 3.284 10 O -0.597 6.597 11 N -0.635 5.635 12 C 0.293 3.707 13 C -0.297 4.297 14 C 0.087 3.913 15 C -0.085 4.085 16 N -0.343 5.343 17 C 0.275 3.725 18 C -0.553 4.553 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.269 1.269 26 N -0.361 5.361 27 N -0.312 5.312 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.215 0.785 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.420 0.580 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.024 0.976 44 H 0.052 0.948 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -19.716 23.010 32.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.154 5.154 4 C -0.084 4.084 5 C -0.301 4.301 6 C -0.123 4.123 7 C 0.103 3.897 8 N -0.374 5.374 9 C 0.415 3.585 10 O -0.475 6.475 11 N -0.287 5.287 12 C 0.038 3.962 13 C -0.328 4.328 14 C -0.043 4.043 15 C -0.143 4.143 16 N -0.126 5.126 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.194 1.194 26 N -0.191 5.191 27 N -0.137 5.137 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.232 0.768 34 H 0.180 0.820 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.257 0.743 39 H 0.185 0.815 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.781 -20.051 21.441 31.631 hybrid contribution 1.335 0.297 0.600 1.493 sum -10.446 -19.753 22.041 31.387 Atomic orbital electron populations 1.22022 0.94015 1.03907 1.02062 1.22078 0.96000 0.75958 1.05821 1.49111 1.35206 1.10621 1.20431 1.23231 0.94111 0.94551 0.96475 1.21709 1.09203 0.97936 1.01295 1.22133 0.98429 0.94230 0.97551 1.19303 0.92496 0.91494 0.86387 1.44789 1.43728 1.16770 1.32076 1.15644 0.80013 0.83733 0.79068 1.90847 1.47957 1.34942 1.73708 1.41347 1.41669 1.16179 1.29524 1.18932 0.96084 0.89029 0.92199 1.21415 1.11163 0.93832 1.06427 1.21742 0.91603 0.97768 0.93171 1.20498 1.01281 0.88149 1.04380 1.48756 1.29053 1.09395 1.25382 1.19241 0.91546 0.93152 0.80435 1.21452 1.08539 1.35447 0.93648 0.93217 1.25735 1.01004 0.96456 0.94650 1.70005 1.39447 1.44460 1.01700 0.85354 0.78505 0.78205 0.78416 1.20032 1.19506 1.19405 1.77165 1.25865 1.02138 1.13981 1.77273 1.24096 0.97547 1.14745 0.92645 0.93619 0.88411 0.89350 0.84911 0.76815 0.82033 0.88670 0.91155 0.75388 0.74257 0.81545 0.88930 0.91398 0.87941 0.95790 0.92993 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.10 71.98 0.73 -0.49 16 2 C 0.12 0.74 7.23 86.38 0.62 1.37 16 3 N -0.37 -4.91 3.68 -348.06 -1.28 -6.19 16 4 C 0.06 0.62 11.45 83.54 0.96 1.57 16 5 C -0.27 -3.78 10.74 21.99 0.24 -3.54 16 6 C 0.04 0.78 6.59 43.10 0.28 1.06 16 7 C 0.23 4.67 6.23 85.63 0.53 5.20 16 8 N -0.72 -15.72 5.55 -482.29 -2.68 -18.40 16 9 C 0.72 21.93 8.53 179.06 1.53 23.46 16 10 O -0.60 -22.25 13.47 -4.02 -0.05 -22.31 16 11 N -0.64 -20.63 5.45 -321.23 -1.75 -22.38 16 12 C 0.29 12.44 8.11 133.31 1.08 13.52 16 13 C -0.30 -12.71 9.52 22.10 0.21 -12.50 16 14 C 0.09 3.82 6.93 41.39 0.29 4.11 16 15 C -0.09 -2.94 9.89 71.24 0.70 -2.23 16 16 N -0.34 -17.10 3.59 -338.45 -1.22 -18.32 16 17 C 0.28 14.86 5.81 85.63 0.50 15.36 16 18 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.02 1.24 5.46 84.66 0.46 1.71 16 21 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 22 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 N -0.36 -17.50 12.59 -54.43 -0.69 -18.19 16 27 N -0.31 -6.32 12.42 -47.38 -0.59 -6.91 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.13 -0.14 8.07 -2.38 -0.02 -0.16 16 33 H 0.22 0.18 8.06 -2.92 -0.02 0.16 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 7.19 8.48 -92.71 -0.79 6.41 16 38 H 0.42 10.97 8.84 -92.71 -0.82 10.15 16 39 H 0.17 6.92 5.91 -2.91 -0.02 6.90 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 41 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 42 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 43 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 2.77 7.65 -2.39 -0.02 2.75 16 45 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -77.69 389.03 1.86 -75.83 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.57 Total: 26.02 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 8.37 Total: 17.35 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -7.92 Total: -142.48 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -77.69 1.86 -75.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414434708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.745 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds