Wall clock time and date at job start Sat Apr 11 2020 03:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99994 * 2 1 4 4 H 1.48499 * 109.46891 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47085 * 119.99919 * 3 2 1 7 7 C 1.37871 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00649 * 179.72725 * 7 2 1 9 9 C 1.50702 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47202 * 179.72595 * 9 7 2 11 11 H 1.08997 * 109.46553 * 55.00430 * 10 9 7 12 12 N 1.46494 * 109.46999 * 295.00105 * 10 9 7 13 13 C 1.34780 * 119.99611 * 154.99860 * 12 10 9 14 14 O 1.21280 * 120.00138 * 0.02562 * 13 12 10 15 15 C 1.50697 * 119.99970 * 179.97438 * 13 12 10 16 16 C 1.52998 * 109.47545 * 186.21783 * 15 13 12 17 17 O 1.42904 * 109.50516 * 302.77745 * 16 15 13 18 18 C 1.53122 * 109.50174 * 62.89041 * 16 15 13 19 19 C 1.53112 * 109.16440 * 177.59744 * 18 16 15 20 20 C 1.53038 * 109.28083 * 302.34791 * 19 18 16 21 21 N 1.46848 * 109.52255 * 59.17353 * 20 19 18 22 22 C 1.46843 * 111.19954 * 298.26493 * 21 20 19 23 23 C 1.50702 * 109.47041 * 175.00251 * 10 9 7 24 24 C 1.38232 * 120.00155 * 79.72457 * 23 10 9 25 25 C 1.38230 * 120.00143 * 179.74309 * 24 23 10 26 26 C 1.38236 * 120.00097 * 0.53264 * 25 24 23 27 27 C 1.38236 * 119.99563 * 359.74767 * 26 25 24 28 28 C 1.38230 * 119.99824 * 260.00419 * 23 10 9 29 29 H 0.97006 * 120.00063 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47188 * 299.72733 * 9 7 2 31 31 H 1.08998 * 109.46982 * 59.72914 * 9 7 2 32 32 H 0.96994 * 120.00409 * 334.99917 * 12 10 9 33 33 H 1.09003 * 109.47374 * 306.21765 * 15 13 12 34 34 H 1.09004 * 109.47298 * 66.21627 * 15 13 12 35 35 H 0.96700 * 113.99576 * 299.99711 * 17 16 15 36 36 H 1.09001 * 109.52521 * 297.50810 * 18 16 15 37 37 H 1.09007 * 109.52286 * 57.69238 * 18 16 15 38 38 H 1.09003 * 109.50949 * 182.40760 * 19 18 16 39 39 H 1.09004 * 109.53444 * 62.30512 * 19 18 16 40 40 H 1.08994 * 109.46041 * 299.16591 * 20 19 18 41 41 H 1.08999 * 109.45941 * 179.18453 * 20 19 18 42 42 H 1.00906 * 110.99699 * 62.35709 * 21 20 19 43 43 H 1.08997 * 109.45999 * 301.71806 * 22 21 20 44 44 H 1.09001 * 109.45369 * 181.75231 * 22 21 20 45 45 H 1.08005 * 119.99673 * 0.02562 * 24 23 10 46 46 H 1.07995 * 120.00115 * 180.29965 * 25 24 23 47 47 H 1.07993 * 120.00506 * 179.77126 * 26 25 24 48 48 H 1.08002 * 119.99585 * 180.02562 * 27 26 25 49 49 H 1.08003 * 120.00239 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0050 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0081 11 1 2.9331 -3.5573 0.8310 12 7 3.0006 -3.6506 -1.2632 13 6 4.2251 -4.2111 -1.3179 14 8 4.7014 -4.7253 -0.3282 15 6 5.0019 -4.1998 -2.6092 16 6 6.2781 -5.0274 -2.4440 17 8 7.0483 -4.5054 -1.3594 18 6 5.9083 -6.4848 -2.1544 19 6 7.1892 -7.3172 -2.0500 20 6 7.9852 -7.1848 -3.3504 21 7 8.3151 -5.7728 -3.5823 22 6 7.1005 -4.9615 -3.7329 23 6 1.4965 -4.9640 0.1157 24 6 0.8850 -5.5178 -0.9935 25 6 0.2026 -6.7146 -0.8811 26 6 0.1223 -7.3522 0.3428 27 6 0.7289 -6.7954 1.4532 28 6 1.4161 -5.6014 1.3396 29 1 -0.4850 0.8401 -0.0004 30 1 0.6284 -2.5592 0.8921 31 1 0.6204 -2.5545 -0.8878 32 1 2.6196 -3.2396 -2.0549 33 1 4.3915 -4.6282 -3.4043 34 1 5.2651 -3.1737 -2.8661 35 1 7.3190 -3.5845 -1.4768 36 1 5.3595 -6.5415 -1.2144 37 1 5.2879 -6.8709 -2.9633 38 1 6.9311 -8.3635 -1.8864 39 1 7.7915 -6.9562 -1.2163 40 1 7.3878 -7.5593 -4.1816 41 1 8.9049 -7.7648 -3.2738 42 1 8.9013 -5.4125 -2.8441 43 1 6.5073 -5.3464 -4.5624 44 1 7.3777 -3.9267 -3.9342 45 1 0.9443 -5.0176 -1.9489 46 1 -0.2710 -7.1497 -1.7487 47 1 -0.4139 -8.2854 0.4315 48 1 0.6665 -7.2938 2.4094 49 1 1.8904 -5.1667 2.2071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:00 Heat of formation + Delta-G solvation = -76.523498 kcal Electronic energy + Delta-G solvation = -29546.341357 eV Core-core repulsion = 25665.139799 eV Total energy + Delta-G solvation = -3881.201558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28835 -39.21693 -38.08635 -35.54654 -34.99137 -32.75456 -32.05776 -31.55515 -30.84408 -30.44863 -28.86392 -27.28532 -24.83260 -23.89052 -22.36193 -22.22182 -21.92768 -20.47574 -20.01747 -19.63174 -17.29369 -16.77101 -16.30611 -16.15673 -15.87243 -15.39459 -15.33187 -14.85768 -14.71587 -14.54778 -14.44763 -13.97269 -13.78092 -13.39487 -13.05322 -12.96739 -12.83591 -12.63221 -12.48828 -12.33139 -12.12530 -11.78586 -11.59223 -11.49300 -11.23451 -11.14937 -10.95622 -10.91885 -10.74145 -10.63574 -10.57927 -10.45536 -10.13812 -9.78958 -9.35535 -9.24533 -8.55693 -8.48824 -8.37974 -8.35594 -8.17450 -6.11382 -4.15030 1.77320 1.79207 3.18763 3.25648 3.31477 3.33835 3.69467 4.10954 4.22152 4.32961 4.37319 4.64506 4.66105 4.80467 4.98467 5.11740 5.23455 5.24789 5.25412 5.26356 5.34434 5.36586 5.44543 5.48938 5.56759 5.58571 5.67727 5.78395 5.83851 5.89916 5.93400 5.97528 6.18234 6.26958 6.34994 6.36320 6.43886 6.58294 6.79099 6.83535 6.84632 6.95762 7.11550 7.20103 7.39671 7.47418 7.62366 7.74369 7.85094 8.17456 8.24557 8.85456 8.90597 9.49956 10.99144 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.004286 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.830113 B = 6531.951512 C = 9077.480210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.185 3.815 11 H 0.085 0.915 12 N -0.705 5.705 13 C 0.509 3.491 14 O -0.526 6.526 15 C -0.171 4.171 16 C 0.120 3.880 17 O -0.535 6.535 18 C -0.110 4.110 19 C -0.151 4.151 20 C 0.055 3.945 21 N -0.679 5.679 22 C 0.031 3.969 23 C -0.069 4.069 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.109 4.109 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.398 0.602 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.368 0.632 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.345 0.655 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -13.265 -7.516 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.081 3.919 11 H 0.103 0.897 12 N -0.354 5.354 13 C 0.294 3.706 14 O -0.403 6.403 15 C -0.213 4.213 16 C 0.076 3.924 17 O -0.339 6.339 18 C -0.147 4.147 19 C -0.190 4.190 20 C -0.075 4.075 21 N -0.307 5.307 22 C -0.099 4.099 23 C -0.070 4.070 24 C -0.127 4.127 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.232 0.768 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.214 0.786 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.163 0.837 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.074 -14.197 -7.255 18.344 hybrid contribution -0.297 1.873 0.271 1.916 sum 8.777 -12.324 -6.983 16.664 Atomic orbital electron populations 1.69948 1.06029 1.26929 1.50189 1.24986 0.94791 0.99206 0.95134 0.86656 0.79569 0.83096 0.78669 1.20302 1.21288 1.20200 1.21085 0.92998 0.90401 1.51357 0.92498 1.19379 0.93240 0.90215 0.98473 1.20191 0.93427 0.91738 0.86538 0.89687 1.46017 1.17130 1.58207 1.14086 1.20265 0.81655 0.78659 0.89973 1.90686 1.68538 1.44491 1.36571 1.22423 0.98281 1.02799 0.97755 1.21582 0.89019 0.94202 0.87555 1.86696 1.72634 1.30920 1.43623 1.21632 0.97667 0.91578 1.03835 1.22162 0.97690 1.00012 0.99167 1.22052 0.99422 0.89649 0.96389 1.60775 1.16869 1.02577 1.50499 1.22714 0.91736 0.98674 0.96816 1.20565 0.96644 0.96553 0.93273 1.20893 0.97684 0.95574 0.98511 1.21035 0.99990 0.95984 0.97348 1.20987 1.01081 1.00055 0.93244 1.21043 0.98525 0.96208 0.98284 1.21024 0.99131 0.95082 0.97470 0.92793 0.94921 0.95820 0.76770 0.88817 0.88705 0.78641 0.88964 0.91692 0.91898 0.91102 0.91263 0.90965 0.83685 0.90186 0.90457 0.86653 0.86796 0.86877 0.86650 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.62 8.84 -34.44 -0.30 -13.92 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 10 C 0.19 3.73 2.11 -69.08 -0.15 3.58 16 11 H 0.09 1.90 7.44 -51.93 -0.39 1.52 16 12 N -0.70 -12.19 4.04 -54.93 -0.22 -12.41 16 13 C 0.51 8.41 7.29 -10.99 -0.08 8.33 16 14 O -0.53 -10.51 12.87 -15.10 -0.19 -10.71 16 15 C -0.17 -2.03 4.94 -27.89 -0.14 -2.17 16 16 C 0.12 1.37 0.57 -90.54 -0.05 1.32 16 17 O -0.53 -7.06 10.49 -55.89 -0.59 -7.64 16 18 C -0.11 -1.38 4.70 -26.61 -0.12 -1.50 16 19 C -0.15 -1.67 5.92 -26.65 -0.16 -1.82 16 20 C 0.05 0.51 6.55 -3.83 -0.03 0.49 16 21 N -0.68 -6.62 6.86 -113.83 -0.78 -7.40 16 22 C 0.03 0.29 5.53 -3.84 -0.02 0.27 16 23 C -0.07 -1.27 4.91 -104.63 -0.51 -1.79 16 24 C -0.11 -1.80 9.32 -39.59 -0.37 -2.17 16 25 C -0.13 -1.85 10.05 -39.59 -0.40 -2.24 16 26 C -0.14 -1.93 10.05 -39.58 -0.40 -2.32 16 27 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 28 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.40 6.34 8.60 -40.82 -0.35 5.99 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.37 3.78 9.05 45.56 0.41 4.19 16 36 H 0.09 1.50 6.06 -51.93 -0.31 1.18 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.35 3.35 8.38 -39.29 -0.33 3.02 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.12 1.78 7.73 -52.48 -0.41 1.38 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 49 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -31.55 393.60 -11.11 -42.66 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -7.24 Total: 14.98 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.73 Total: -16.49 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.27 Total: -44.52 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.78 Total: -18.35 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.55 -11.11 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.865 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds