Wall clock time and date at job start Sat Apr 11 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47461 * 270.00742 * 3 2 1 5 5 H 1.48508 * 109.46773 * 30.00510 * 3 2 1 6 6 H 1.48504 * 109.47286 * 150.00437 * 3 2 1 7 7 C 1.38813 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.49820 * 125.87622 * 179.97438 * 9 7 2 11 11 C 1.49203 * 102.02064 * 202.99851 * 10 9 7 12 12 H 1.08998 * 105.09330 * 65.53220 * 11 10 9 13 13 C 1.55129 * 101.89977 * 317.22257 * 11 10 9 14 14 H 1.09001 * 109.88040 * 291.24746 * 13 11 10 15 15 C 1.49138 * 125.87513 * 359.97438 * 9 7 2 16 16 C 1.52080 * 104.15338 * 173.70656 * 13 11 10 17 17 H 1.09006 * 114.36318 * 208.36473 * 16 13 11 18 18 C 1.56495 * 103.08559 * 83.79521 * 16 13 11 19 19 C 1.53825 * 106.91087 * 322.87072 * 18 16 13 20 20 C 1.49227 * 129.58642 * 192.12766 * 11 10 9 21 21 H 1.08998 * 113.94109 * 330.63522 * 20 11 10 22 22 C 1.56595 * 102.89136 * 207.44271 * 20 11 10 23 23 N 1.49025 * 103.69450 * 323.45001 * 22 20 11 24 24 C 1.34773 * 122.56363 * 143.66569 * 23 22 20 25 25 O 1.21624 * 119.99549 * 185.11779 * 24 23 22 26 26 C 1.47104 * 120.00617 * 5.11684 * 24 23 22 27 27 C 1.32087 * 118.87341 * 75.10801 * 26 24 23 28 28 C 1.50271 * 122.57390 * 180.02562 * 27 26 24 29 29 O 1.42894 * 110.09427 * 344.37850 * 28 27 26 30 30 C 1.43274 * 113.09989 * 50.52896 * 29 28 27 31 31 C 1.50411 * 118.87478 * 254.84206 * 26 24 23 32 32 H 0.96998 * 120.00321 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.84621 * 321.41250 * 10 9 7 34 34 H 1.09005 * 110.84294 * 84.81341 * 10 9 7 35 35 H 1.08993 * 110.29471 * 67.58968 * 15 9 7 36 36 H 1.08994 * 110.37165 * 305.50513 * 15 9 7 37 37 H 1.09003 * 110.07311 * 203.49862 * 18 16 13 38 38 H 1.09000 * 109.95023 * 82.17852 * 18 16 13 39 39 H 1.09001 * 109.53027 * 205.89771 * 19 18 16 40 40 H 1.08989 * 109.59037 * 85.71664 * 19 18 16 41 41 H 1.08992 * 110.57563 * 204.90872 * 22 20 11 42 42 H 1.09000 * 110.75032 * 82.07015 * 22 20 11 43 43 H 1.07997 * 118.71601 * 0.09453 * 27 26 24 44 44 H 1.09000 * 109.36334 * 104.56681 * 28 27 26 45 45 H 1.09001 * 109.36420 * 224.31498 * 28 27 26 46 46 H 1.08992 * 109.63959 * 50.85614 * 30 29 28 47 47 H 1.09001 * 109.63728 * 171.26576 * 30 29 28 48 48 H 1.09005 * 109.45353 * 283.64634 * 31 26 24 49 49 H 1.09004 * 109.45842 * 43.58648 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9379 -3.7554 -0.0016 11 6 0.8385 -4.5878 -0.5713 12 1 0.7197 -4.2378 -1.5967 13 6 -0.4045 -4.0240 0.1660 14 1 -0.3611 -4.2897 1.2222 15 6 -0.1580 -2.5408 0.0005 16 6 -1.5797 -4.7284 -0.4941 17 1 -2.5093 -4.1592 -0.4825 18 6 -1.6519 -6.0910 0.2722 19 6 -0.2028 -6.5235 0.5536 20 6 0.6980 -6.0726 -0.6214 21 1 1.6479 -6.6056 -0.6616 22 6 -0.1950 -6.2966 -1.8880 23 7 -1.1434 -5.1475 -1.8587 24 6 -1.5702 -4.5304 -2.9783 25 8 -2.2704 -3.5392 -2.8971 26 6 -1.1892 -5.0555 -4.2985 27 6 -1.7841 -6.1462 -4.7471 28 6 -1.4590 -6.7542 -6.0823 29 8 -0.7392 -5.8174 -6.8861 30 6 0.3830 -5.2401 -6.2077 31 6 -0.1399 -4.3286 -5.0941 32 1 -0.4850 0.8400 0.0004 33 1 2.8226 -3.7837 -0.6377 34 1 2.1812 -4.0722 1.0126 35 1 -0.5747 -2.1914 -0.9440 36 1 -0.5955 -1.9897 0.8329 37 1 -2.1505 -6.8401 -0.3429 38 1 -2.1902 -5.9615 1.2112 39 1 -0.1586 -7.6082 0.6511 40 1 0.1440 -6.0602 1.4772 41 1 -0.7347 -7.2406 -1.8142 42 1 0.4085 -6.2719 -2.7954 43 1 -2.5342 -6.6190 -4.1305 44 1 -0.8505 -7.6464 -5.9346 45 1 -2.3841 -7.0275 -6.5898 46 1 0.9964 -6.0307 -5.7758 47 1 0.9776 -4.6587 -6.9124 48 1 -0.5751 -3.4318 -5.5352 49 1 0.6834 -4.0470 -4.4375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089799310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:44 Heat of formation + Delta-G solvation = 12.343791 kcal Electronic energy + Delta-G solvation = -31033.153766 eV Core-core repulsion = 27155.805783 eV Total energy + Delta-G solvation = -3877.347983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64142 -39.66421 -38.12092 -35.91359 -34.00566 -32.58602 -31.93173 -31.41523 -31.28260 -28.95817 -26.90115 -26.57056 -24.94895 -24.60791 -23.99104 -22.13273 -21.03704 -20.61777 -19.95875 -18.34841 -17.51339 -17.13515 -16.77905 -16.55644 -16.22281 -15.57000 -15.45821 -15.15608 -14.55668 -14.25437 -14.14259 -14.00366 -13.32307 -13.24335 -13.10364 -12.90269 -12.82956 -12.66059 -12.47051 -12.21073 -12.02431 -11.65193 -11.56422 -11.45072 -11.18890 -11.02437 -10.85178 -10.81181 -10.69109 -10.51013 -10.20482 -10.19090 -9.99101 -9.64379 -9.55830 -9.34719 -9.22921 -9.09378 -8.57582 -8.30707 -6.77172 -5.61137 -2.95655 1.62626 2.80638 3.11841 3.44794 3.48840 3.51683 3.66649 4.36414 4.52005 4.56333 4.60316 4.74758 4.77931 4.84722 5.02997 5.04872 5.06514 5.14105 5.15603 5.29607 5.33330 5.35498 5.46577 5.51893 5.53107 5.53667 5.55825 5.65841 5.82368 5.87458 5.93763 5.95237 6.02386 6.10907 6.17738 6.24388 6.37027 6.42986 6.44629 6.47491 6.64651 6.68524 6.85995 6.87999 7.11212 7.60259 7.64463 7.73272 7.92227 8.28093 8.38895 9.25611 9.86925 10.55248 11.50002 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.004550 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.762373 B = 6152.099997 C = 7424.807789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.154 3.846 11 C -0.120 4.120 12 H 0.067 0.933 13 C -0.133 4.133 14 H 0.075 0.925 15 C 0.192 3.808 16 C 0.164 3.836 17 H 0.110 0.890 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.076 4.076 21 H 0.095 0.905 22 C 0.114 3.886 23 N -0.606 5.606 24 C 0.553 3.447 25 O -0.523 6.523 26 C -0.122 4.122 27 C -0.171 4.171 28 C 0.094 3.906 29 O -0.378 6.378 30 C 0.063 3.937 31 C -0.113 4.113 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.018 0.982 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.056 0.944 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -20.226 -6.545 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.338 5.338 10 C 0.029 3.971 11 C -0.139 4.139 12 H 0.085 0.915 13 C -0.153 4.153 14 H 0.093 0.907 15 C 0.068 3.932 16 C 0.062 3.938 17 H 0.128 0.872 18 C -0.168 4.168 19 C -0.154 4.154 20 C -0.096 4.096 21 H 0.113 0.887 22 C -0.008 4.008 23 N -0.341 5.341 24 C 0.340 3.660 25 O -0.399 6.399 26 C -0.125 4.125 27 C -0.190 4.190 28 C 0.017 3.983 29 O -0.297 6.297 30 C -0.014 4.014 31 C -0.150 4.150 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.120 0.880 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.018 -19.363 -6.716 20.594 hybrid contribution 0.453 0.935 0.362 1.100 sum -1.566 -18.428 -6.354 19.555 Atomic orbital electron populations 1.69961 1.04790 1.24911 1.56836 1.24784 0.95660 0.97482 1.02515 0.86166 0.78530 0.83825 0.77509 1.21721 1.21710 1.20782 1.19025 0.90276 0.82449 1.43871 0.90614 1.45602 1.01095 0.99283 1.87786 1.20470 0.93629 0.86247 0.96794 1.20938 0.97717 0.92784 1.02501 0.91506 1.22576 0.94024 0.99851 0.98870 0.90693 1.20646 0.83968 0.87513 1.01037 1.22173 0.98103 0.94587 0.78959 0.87216 1.22834 0.97008 0.96582 1.00399 1.22131 0.94434 0.99900 0.98896 1.21568 0.97676 0.96217 0.94109 0.88730 1.22958 0.90611 0.88419 0.98825 1.49516 1.45897 1.32910 1.05804 1.18430 0.80362 0.83154 0.84055 1.90875 1.38124 1.24107 1.86806 1.20947 0.99690 0.96564 0.95312 1.23263 1.00240 0.96614 0.98868 1.21433 0.96942 0.91064 0.88819 1.88127 1.43056 1.59432 1.39083 1.22663 0.88015 0.95970 0.94719 1.21001 0.97458 0.99449 0.97125 0.93795 0.94339 0.96401 0.94451 0.92589 0.91570 0.90723 0.92121 0.91068 0.91190 0.90570 0.86231 0.91444 0.87747 0.92533 0.87975 0.88885 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.30 10.39 55.49 0.58 -27.73 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.55 10.32 -15.06 -0.16 -6.71 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -16.01 3.50 -171.50 -0.60 -16.61 16 10 C 0.15 3.17 7.19 -4.06 -0.03 3.14 16 11 C -0.12 -2.05 2.19 -93.22 -0.20 -2.26 16 12 H 0.07 1.32 5.98 -51.93 -0.31 1.01 16 13 C -0.13 -2.50 2.33 -90.83 -0.21 -2.71 16 14 H 0.07 1.36 6.30 -51.93 -0.33 1.03 16 15 C 0.19 4.87 5.07 -3.45 -0.02 4.86 16 16 C 0.16 2.62 4.19 -64.98 -0.27 2.35 16 17 H 0.11 1.95 7.77 -51.93 -0.40 1.55 16 18 C -0.13 -1.51 5.48 -24.42 -0.13 -1.64 16 19 C -0.12 -1.26 5.30 -25.37 -0.13 -1.40 16 20 C -0.08 -0.92 4.29 -89.61 -0.38 -1.30 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 22 C 0.11 1.29 5.25 -0.70 0.00 1.28 16 23 N -0.61 -9.13 1.78 -159.51 -0.28 -9.42 16 24 C 0.55 9.66 6.85 -12.67 -0.09 9.57 16 25 O -0.52 -11.81 17.04 5.26 0.09 -11.72 16 26 C -0.12 -1.69 4.11 -103.09 -0.42 -2.12 16 27 C -0.17 -1.87 9.48 -36.44 -0.35 -2.22 16 28 C 0.09 0.84 7.04 35.80 0.25 1.10 16 29 O -0.38 -4.34 10.83 -35.23 -0.38 -4.72 16 30 C 0.06 0.64 6.88 37.21 0.26 0.90 16 31 C -0.11 -1.49 6.08 -27.97 -0.17 -1.66 16 32 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 1.10 7.85 -51.93 -0.41 0.69 16 36 H 0.06 1.59 7.12 -51.93 -0.37 1.22 16 37 H 0.07 0.68 7.29 -51.93 -0.38 0.31 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.86 6.91 -51.94 -0.36 0.50 16 41 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 42 H 0.08 0.81 7.17 -51.93 -0.37 0.43 16 43 H 0.12 1.20 7.99 -52.49 -0.42 0.78 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 49 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -35.40 369.15 -10.13 -45.54 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.91 Total: 0.38 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.16 Total: 0.85 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.31 Total: -53.75 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.29 Total: -16.44 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.40 -10.13 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089799310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.879 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds