Wall clock time and date at job start Sat Apr 11 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47461 * 270.00742 * 3 2 1 5 5 H 1.48508 * 109.46773 * 30.00510 * 3 2 1 6 6 H 1.48504 * 109.47286 * 150.00437 * 3 2 1 7 7 C 1.38813 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.49820 * 125.87622 * 179.97438 * 9 7 2 11 11 C 1.49203 * 102.02064 * 202.99851 * 10 9 7 12 12 H 1.08998 * 105.09330 * 65.53220 * 11 10 9 13 13 C 1.55129 * 101.89977 * 317.22257 * 11 10 9 14 14 H 1.09001 * 109.88040 * 291.24746 * 13 11 10 15 15 C 1.49138 * 125.87513 * 359.97438 * 9 7 2 16 16 C 1.52080 * 104.15338 * 173.70656 * 13 11 10 17 17 H 1.09006 * 114.36318 * 208.36473 * 16 13 11 18 18 C 1.56495 * 103.08559 * 83.79521 * 16 13 11 19 19 C 1.53825 * 106.91087 * 322.87072 * 18 16 13 20 20 C 1.49227 * 129.58642 * 192.12766 * 11 10 9 21 21 H 1.08998 * 113.94109 * 330.63522 * 20 11 10 22 22 C 1.56595 * 102.89136 * 207.44271 * 20 11 10 23 23 N 1.49025 * 103.69450 * 323.45001 * 22 20 11 24 24 C 1.34773 * 122.56363 * 143.66569 * 23 22 20 25 25 O 1.21624 * 119.99549 * 185.11779 * 24 23 22 26 26 C 1.47104 * 120.00617 * 5.11684 * 24 23 22 27 27 C 1.32087 * 118.87341 * 75.10801 * 26 24 23 28 28 C 1.50271 * 122.57390 * 180.02562 * 27 26 24 29 29 O 1.42894 * 110.09427 * 344.37850 * 28 27 26 30 30 C 1.43274 * 113.09989 * 50.52896 * 29 28 27 31 31 C 1.50411 * 118.87478 * 254.84206 * 26 24 23 32 32 H 0.96998 * 120.00321 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.84621 * 321.41250 * 10 9 7 34 34 H 1.09005 * 110.84294 * 84.81341 * 10 9 7 35 35 H 1.08993 * 110.29471 * 67.58968 * 15 9 7 36 36 H 1.08994 * 110.37165 * 305.50513 * 15 9 7 37 37 H 1.09003 * 110.07311 * 203.49862 * 18 16 13 38 38 H 1.09000 * 109.95023 * 82.17852 * 18 16 13 39 39 H 1.09001 * 109.53027 * 205.89771 * 19 18 16 40 40 H 1.08989 * 109.59037 * 85.71664 * 19 18 16 41 41 H 1.08992 * 110.57563 * 204.90872 * 22 20 11 42 42 H 1.09000 * 110.75032 * 82.07015 * 22 20 11 43 43 H 1.07997 * 118.71601 * 0.09453 * 27 26 24 44 44 H 1.09000 * 109.36334 * 104.56681 * 28 27 26 45 45 H 1.09001 * 109.36420 * 224.31498 * 28 27 26 46 46 H 1.08992 * 109.63959 * 50.85614 * 30 29 28 47 47 H 1.09001 * 109.63728 * 171.26576 * 30 29 28 48 48 H 1.09005 * 109.45353 * 283.64634 * 31 26 24 49 49 H 1.09004 * 109.45842 * 43.58648 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9379 -3.7554 -0.0016 11 6 0.8385 -4.5878 -0.5713 12 1 0.7197 -4.2378 -1.5967 13 6 -0.4045 -4.0240 0.1660 14 1 -0.3611 -4.2897 1.2222 15 6 -0.1580 -2.5408 0.0005 16 6 -1.5797 -4.7284 -0.4941 17 1 -2.5093 -4.1592 -0.4825 18 6 -1.6519 -6.0910 0.2722 19 6 -0.2028 -6.5235 0.5536 20 6 0.6980 -6.0726 -0.6214 21 1 1.6479 -6.6056 -0.6616 22 6 -0.1950 -6.2966 -1.8880 23 7 -1.1434 -5.1475 -1.8587 24 6 -1.5702 -4.5304 -2.9783 25 8 -2.2704 -3.5392 -2.8971 26 6 -1.1892 -5.0555 -4.2985 27 6 -1.7841 -6.1462 -4.7471 28 6 -1.4590 -6.7542 -6.0823 29 8 -0.7392 -5.8174 -6.8861 30 6 0.3830 -5.2401 -6.2077 31 6 -0.1399 -4.3286 -5.0941 32 1 -0.4850 0.8400 0.0004 33 1 2.8226 -3.7837 -0.6377 34 1 2.1812 -4.0722 1.0126 35 1 -0.5747 -2.1914 -0.9440 36 1 -0.5955 -1.9897 0.8329 37 1 -2.1505 -6.8401 -0.3429 38 1 -2.1902 -5.9615 1.2112 39 1 -0.1586 -7.6082 0.6511 40 1 0.1440 -6.0602 1.4772 41 1 -0.7347 -7.2406 -1.8142 42 1 0.4085 -6.2719 -2.7954 43 1 -2.5342 -6.6190 -4.1305 44 1 -0.8505 -7.6464 -5.9346 45 1 -2.3841 -7.0275 -6.5898 46 1 0.9964 -6.0307 -5.7758 47 1 0.9776 -4.6587 -6.9124 48 1 -0.5751 -3.4318 -5.5352 49 1 0.6834 -4.0470 -4.4375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089799310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:43 Heat of formation + Delta-G solvation = -11.734291 kcal Electronic energy + Delta-G solvation = -31034.197870 eV Core-core repulsion = 27155.805783 eV Total energy + Delta-G solvation = -3878.392087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.91164 -40.67385 -39.36642 -37.62128 -35.11879 -34.31227 -33.35774 -32.64367 -32.12969 -30.79150 -28.53766 -27.68611 -26.66452 -25.65506 -24.85821 -23.63067 -22.25934 -21.97294 -21.58138 -19.42910 -18.89703 -18.52337 -18.33531 -17.64282 -17.38570 -17.06853 -16.69088 -16.24636 -16.01574 -15.52887 -15.43465 -15.17567 -14.97613 -14.56056 -14.38879 -14.20834 -14.06039 -13.79809 -13.67628 -13.55092 -13.30844 -13.05683 -12.96101 -12.70633 -12.62533 -12.55206 -12.39603 -12.12314 -12.01802 -11.99135 -11.90020 -11.85579 -11.36162 -11.28157 -10.88352 -10.85824 -10.72823 -10.37664 -10.08454 -9.59289 -8.97565 -7.87756 -5.25296 0.66759 1.37485 1.41373 1.50104 1.51246 1.97267 2.43350 2.90153 3.27962 3.35101 3.37759 3.48182 3.61616 3.70772 3.75961 3.90703 4.02225 4.18136 4.19203 4.22879 4.26359 4.33008 4.37732 4.39139 4.49239 4.55447 4.63322 4.68853 4.70849 4.74955 4.80792 4.85346 4.88257 4.89752 4.95918 5.04991 5.06716 5.20702 5.23179 5.32769 5.38249 5.43230 5.49121 5.52664 5.59601 5.67067 5.72595 6.09040 6.13228 6.44262 6.99120 7.10698 7.67987 8.36749 9.22246 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.004550 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.762373 B = 6152.099997 C = 7424.807789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.075 4.075 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.240 4.240 8 H 0.087 0.913 9 N -0.635 5.635 10 C 0.149 3.851 11 C -0.094 4.094 12 H 0.033 0.967 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.208 3.792 16 C 0.150 3.850 17 H 0.074 0.926 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.067 4.067 21 H 0.132 0.868 22 C 0.113 3.887 23 N -0.602 5.602 24 C 0.543 3.457 25 O -0.599 6.599 26 C -0.160 4.160 27 C -0.130 4.130 28 C 0.088 3.912 29 O -0.397 6.397 30 C 0.073 3.927 31 C -0.110 4.110 32 H 0.242 0.758 33 H 0.046 0.954 34 H 0.035 0.965 35 H -0.024 1.024 36 H 0.009 0.991 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.059 0.941 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 -25.652 -6.925 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.267 4.267 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.369 4.369 8 H 0.104 0.896 9 N -0.363 5.363 10 C 0.025 3.975 11 C -0.114 4.114 12 H 0.051 0.949 13 C -0.147 4.147 14 H 0.105 0.895 15 C 0.084 3.916 16 C 0.047 3.953 17 H 0.092 0.908 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.086 4.086 21 H 0.150 0.850 22 C -0.008 4.008 23 N -0.334 5.334 24 C 0.332 3.668 25 O -0.480 6.480 26 C -0.163 4.163 27 C -0.149 4.149 28 C 0.012 3.988 29 O -0.316 6.316 30 C -0.004 4.004 31 C -0.148 4.148 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.052 0.948 35 H -0.006 1.006 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.153 0.847 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.102 0.898 47 H 0.130 0.870 48 H 0.078 0.922 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.223 -24.880 -7.080 25.868 hybrid contribution -0.095 2.624 0.481 2.669 sum -0.318 -22.256 -6.599 23.216 Atomic orbital electron populations 1.70266 1.06695 1.24962 1.58588 1.25751 0.96506 1.01407 1.03025 0.85051 0.77853 0.78918 0.77388 1.21619 1.22176 1.18460 1.19525 0.91041 0.83815 1.42480 0.89568 1.46008 1.01675 1.01171 1.87454 1.20695 0.94770 0.84037 0.97961 1.20898 0.94537 0.96563 0.99388 0.94898 1.22422 0.96992 0.95029 1.00293 0.89486 1.20200 0.83697 0.91867 0.95859 1.22139 0.95399 0.97133 0.80594 0.90759 1.22794 0.98642 0.93383 1.00386 1.22149 0.92649 1.02568 0.97465 1.21690 0.99943 0.91660 0.95310 0.84996 1.23336 0.90121 0.88278 0.99021 1.49678 1.45684 1.33352 1.04690 1.19191 0.79297 0.82248 0.86030 1.90825 1.41664 1.27512 1.88040 1.20692 1.02561 0.98843 0.94187 1.23650 0.97469 0.94325 0.99425 1.21817 0.98427 0.91363 0.87195 1.88114 1.43571 1.60078 1.39848 1.22674 0.87901 0.96136 0.93681 1.20936 0.96757 0.99273 0.97826 0.94846 0.93561 0.94751 1.00594 0.97243 0.88910 0.89753 0.87537 0.92085 0.86786 0.89470 0.84704 0.87654 0.85604 0.89805 0.87024 0.92231 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.00 10.39 21.65 0.22 -63.77 16 2 C -0.07 -4.61 5.49 84.86 0.47 -4.15 16 3 Si 0.98 49.21 29.55 68.60 2.03 51.23 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -14.40 10.32 84.03 0.87 -13.53 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.83 16 9 N -0.64 -35.24 3.50 -696.51 -2.44 -37.68 16 10 C 0.15 6.13 7.19 84.52 0.61 6.73 16 11 C -0.09 -3.17 2.19 -12.48 -0.03 -3.20 16 12 H 0.03 1.34 5.98 -2.39 -0.01 1.32 16 13 C -0.13 -4.99 2.33 -10.93 -0.03 -5.02 16 14 H 0.09 3.19 6.30 -2.39 -0.02 3.17 16 15 C 0.21 11.62 5.07 85.30 0.43 12.05 16 16 C 0.15 4.96 4.19 45.37 0.19 5.15 16 17 H 0.07 2.95 7.77 -2.38 -0.02 2.93 16 18 C -0.11 -2.25 5.48 32.09 0.18 -2.08 16 19 C -0.11 -1.81 5.30 31.48 0.17 -1.65 16 20 C -0.07 -1.31 4.29 -10.14 -0.04 -1.35 16 21 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 22 C 0.11 2.06 5.25 87.15 0.46 2.52 16 23 N -0.60 -18.03 1.78 -776.82 -1.38 -19.41 16 24 C 0.54 20.11 6.85 86.57 0.59 20.70 16 25 O -0.60 -30.16 17.04 -4.11 -0.07 -30.23 16 26 C -0.16 -4.45 4.11 -18.59 -0.08 -4.52 16 27 C -0.13 -2.48 9.48 24.59 0.23 -2.24 16 28 C 0.09 1.19 7.04 71.10 0.50 1.69 16 29 O -0.40 -8.03 10.83 -148.98 -1.61 -9.65 16 30 C 0.07 1.36 6.88 72.02 0.50 1.85 16 31 C -0.11 -3.05 6.08 29.79 0.18 -2.86 16 32 H 0.24 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 35 H -0.02 -1.62 7.85 -2.39 -0.02 -1.64 16 36 H 0.01 0.59 7.12 -2.39 -0.02 0.57 16 37 H 0.09 1.40 7.29 -2.39 -0.02 1.39 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.18 6.91 -2.39 -0.02 1.17 16 41 H 0.11 1.23 7.18 -2.39 -0.02 1.21 16 42 H 0.09 1.47 7.17 -2.39 -0.02 1.46 16 43 H 0.14 2.17 7.99 -2.91 -0.02 2.15 16 44 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -91.44 369.15 2.88 -88.55 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.94 Total: 10.86 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.19 Total: 10.10 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -3.59 Total: -120.86 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.68 Total: -39.87 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Total: -91.44 2.88 -88.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089799310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.819 kcal (2) G-P(sol) polarization free energy of solvation -91.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds