Wall clock time and date at job start Sat Apr 11 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38402 * 120.11396 * 2 1 4 4 C 1.37697 * 119.97448 * 179.97438 * 3 2 1 5 5 C 1.38925 * 120.78476 * 0.36992 * 4 3 2 6 6 C 1.39237 * 118.88417 * 359.49123 * 5 4 3 7 7 C 1.37979 * 120.23456 * 0.33484 * 6 5 4 8 8 C 1.50704 * 119.82498 * 180.02562 * 7 6 5 9 9 O 1.36384 * 111.31694 * 179.09360 * 5 4 3 10 10 C 1.43781 * 109.09824 * 18.75245 * 9 5 4 11 11 H 1.08992 * 110.74413 * 90.91306 * 10 9 5 12 12 C 1.50699 * 110.74833 * 214.08195 * 10 9 5 13 13 O 1.21281 * 119.99933 * 3.66363 * 12 10 9 14 14 N 1.34773 * 120.00114 * 183.66927 * 12 10 9 15 15 C 1.46505 * 119.99965 * 5.33018 * 14 12 10 16 16 C 1.46498 * 120.00304 * 185.32363 * 14 12 10 17 17 H 1.09005 * 109.46677 * 0.02562 * 16 14 12 18 18 C 1.52998 * 109.47110 * 120.00034 * 16 14 12 19 19 C 1.52996 * 109.47358 * 240.00386 * 16 14 12 20 20 N 1.46500 * 109.47249 * 54.99934 * 19 16 14 21 21 C 1.36938 * 119.99931 * 180.02562 * 20 19 16 22 22 H 1.07999 * 120.00307 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99885 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00222 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99982 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47076 * 59.99541 * 25 23 21 27 27 H 1.48492 * 109.47308 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47288 * 299.99940 * 25 23 21 29 29 C 1.51642 * 132.18117 * 180.39967 * 4 3 2 30 30 H 1.08994 * 109.46942 * 270.00212 * 1 2 3 31 31 H 1.09005 * 109.46781 * 30.00424 * 1 2 3 32 32 H 1.08998 * 109.46373 * 150.00322 * 1 2 3 33 33 H 1.08001 * 120.00615 * 359.97438 * 3 2 1 34 34 H 1.07990 * 119.88341 * 180.35261 * 6 5 4 35 35 H 1.09001 * 109.47479 * 89.99438 * 8 7 6 36 36 H 1.08996 * 109.46812 * 209.99561 * 8 7 6 37 37 H 1.09005 * 109.47060 * 329.99565 * 8 7 6 38 38 H 1.08991 * 109.47482 * 84.90608 * 15 14 12 39 39 H 1.08998 * 109.47069 * 204.91658 * 15 14 12 40 40 H 1.09002 * 109.46658 * 324.90748 * 15 14 12 41 41 H 1.08994 * 109.46908 * 60.00168 * 18 16 14 42 42 H 1.09005 * 109.47339 * 180.02562 * 18 16 14 43 43 H 1.09010 * 109.47035 * 300.00079 * 18 16 14 44 44 H 1.08999 * 109.47171 * 175.00170 * 19 16 14 45 45 H 1.08997 * 109.46835 * 294.99547 * 19 16 14 46 46 H 0.97001 * 120.00011 * 0.02562 * 20 19 16 47 47 H 0.96995 * 120.00758 * 180.02562 * 24 23 21 48 48 H 1.08998 * 110.94247 * 46.43532 * 29 4 3 49 49 H 1.09007 * 110.93658 * 282.75363 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1972 0.0000 4 6 3.5784 1.1939 0.0005 5 6 4.2865 -0.0013 -0.0066 6 6 3.5805 -1.2014 -0.0036 7 6 2.2007 -1.1958 -0.0005 8 6 1.4459 -2.5001 0.0033 9 8 5.6322 0.2198 -0.0248 10 6 5.8935 1.5664 0.4061 11 1 6.0455 1.6039 1.4847 12 6 7.0848 2.1373 -0.3191 13 8 7.6338 1.4909 -1.1862 14 7 7.5402 3.3660 -0.0042 15 6 6.9528 4.0990 1.1202 16 6 8.6226 3.9687 -0.7859 17 1 8.9283 3.2805 -1.5741 18 6 8.1326 5.2757 -1.4124 19 6 9.8137 4.2573 0.1300 20 7 10.2074 3.0271 0.8213 21 6 11.2577 3.0416 1.6999 22 1 11.7960 3.9598 1.8829 23 6 11.6311 1.8759 2.3546 24 7 10.9754 0.7568 2.1312 25 14 13.0642 1.8955 3.5526 26 1 12.7756 2.8489 4.6540 27 1 13.2583 0.5348 4.1145 28 1 14.2976 2.3187 2.8421 29 6 4.5994 2.3151 0.0085 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6634 2.1337 -0.0004 34 1 4.1147 -2.1399 -0.0033 35 1 1.2662 -2.8130 1.0319 36 1 0.4925 -2.3696 -0.5085 37 1 2.0330 -3.2613 -0.5106 38 1 7.4391 3.7939 2.0466 39 1 7.0951 5.1692 0.9703 40 1 5.8868 3.8791 1.1799 41 1 7.8267 5.9639 -0.6246 42 1 8.9379 5.7240 -1.9945 43 1 7.2840 5.0701 -2.0651 44 1 10.6501 4.6228 -0.4659 45 1 9.5330 5.0127 0.8639 46 1 9.7242 2.2023 0.6566 47 1 11.2360 -0.0577 2.5889 48 1 4.3426 3.0705 0.7512 49 1 4.6958 2.7611 -0.9814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568318708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:20 Heat of formation + Delta-G solvation = -23.663486 kcal Electronic energy + Delta-G solvation = -29038.942136 eV Core-core repulsion = 25160.032760 eV Total energy + Delta-G solvation = -3878.909376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43655 -39.57002 -38.11701 -36.26410 -34.13628 -33.39043 -32.39285 -31.96780 -30.72006 -29.94616 -27.19553 -26.93105 -26.64411 -25.58082 -23.63152 -22.55471 -22.17975 -21.20104 -20.39543 -18.86776 -17.62580 -17.05175 -16.95354 -16.59031 -16.12183 -15.41209 -15.07242 -14.74422 -14.61078 -14.32873 -14.09071 -13.86265 -13.64287 -13.34114 -13.22653 -13.03577 -12.94657 -12.88462 -12.76446 -12.46565 -12.34884 -12.28138 -12.21728 -11.98726 -11.94762 -11.66651 -11.49694 -11.44895 -10.95822 -10.81929 -10.75652 -10.68803 -10.46007 -10.05380 -9.66515 -9.41690 -8.85708 -8.84018 -8.30441 -8.03289 -6.87206 -5.69143 -2.99489 1.13009 1.26233 2.65837 2.92588 3.43018 3.46005 3.50265 3.52143 3.64185 4.20479 4.35628 4.60311 4.63986 4.69498 4.74648 4.89262 4.95555 5.03174 5.10026 5.20216 5.24572 5.28662 5.34034 5.38350 5.45799 5.51391 5.53922 5.55067 5.58263 5.62348 5.65189 5.67697 5.80325 5.93354 6.00205 6.06518 6.09310 6.14066 6.17237 6.31301 6.36393 6.42784 6.47091 6.56266 6.71966 6.94561 7.14887 7.62541 7.72479 8.44547 8.47871 9.58973 10.17821 10.52957 11.52558 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002929 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.334912 B = 9556.367260 C =10798.389598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.064 4.064 4 C -0.177 4.177 5 C 0.112 3.888 6 C -0.135 4.135 7 C -0.052 4.052 8 C -0.116 4.116 9 O -0.269 6.269 10 C 0.068 3.932 11 H 0.113 0.887 12 C 0.523 3.477 13 O -0.512 6.512 14 N -0.592 5.592 15 C 0.071 3.929 16 C 0.127 3.873 17 H 0.100 0.900 18 C -0.155 4.155 19 C 0.145 3.855 20 N -0.728 5.728 21 C -0.243 4.243 22 H 0.068 0.932 23 C -0.012 4.012 24 N -0.927 5.927 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.094 4.094 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.028 0.972 45 H 0.021 0.979 46 H 0.387 0.613 47 H 0.256 0.744 48 H 0.101 0.899 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.815 3.768 -4.195 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.178 4.178 5 C 0.066 3.934 6 C -0.154 4.154 7 C -0.052 4.052 8 C -0.173 4.173 9 O -0.182 6.182 10 C 0.008 3.992 11 H 0.131 0.869 12 C 0.309 3.691 13 O -0.386 6.386 14 N -0.327 5.327 15 C -0.072 4.072 16 C 0.024 3.976 17 H 0.118 0.882 18 C -0.214 4.214 19 C 0.016 3.984 20 N -0.373 5.373 21 C -0.375 4.375 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.575 5.575 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.131 4.131 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.038 0.962 46 H 0.221 0.779 47 H 0.065 0.935 48 H 0.119 0.881 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.174 3.305 -4.630 23.862 hybrid contribution 0.872 -0.068 0.880 1.240 sum -22.302 3.236 -3.750 22.846 Atomic orbital electron populations 1.20748 0.90956 1.02651 1.02137 1.19557 0.95949 0.92119 1.04671 1.20079 0.91448 0.97819 0.98835 1.20660 0.94557 0.94254 1.08308 1.19673 0.83326 0.94569 0.95782 1.20098 0.92729 0.95879 1.06660 1.19408 0.92208 0.95243 0.98341 1.20870 1.00001 0.93783 1.02606 1.87088 1.19187 1.29902 1.81990 1.23180 0.94534 0.81268 1.00169 0.86939 1.19799 0.84300 0.81440 0.83568 1.90748 1.57689 1.57897 1.32292 1.47503 1.36620 1.16285 1.32267 1.21911 0.97573 0.97676 0.90008 1.21428 0.86682 0.94828 0.94645 0.88151 1.22076 1.01588 0.97042 1.00679 1.20995 0.92903 0.91104 0.93398 1.42310 1.38046 1.06533 1.50422 1.19147 1.07037 0.94858 1.16417 0.91355 1.24764 0.99645 0.95676 1.00779 1.69678 1.42394 0.99416 1.46040 0.86291 0.82501 0.76471 0.81017 1.21372 1.21720 1.21312 1.21742 0.90561 0.96951 1.03887 0.91414 0.91819 0.91260 0.85808 0.85221 0.90851 0.90927 0.91332 0.91394 0.90578 0.91830 0.92252 0.91224 0.92633 0.95440 0.96173 0.77865 0.93455 0.88099 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.61 36.01 0.35 -0.39 16 2 C -0.12 -1.22 5.89 -104.56 -0.62 -1.84 16 3 C -0.06 -0.67 9.70 -39.72 -0.39 -1.06 16 4 C -0.18 -2.26 6.27 -104.10 -0.65 -2.91 16 5 C 0.11 1.71 7.04 -38.96 -0.27 1.44 16 6 C -0.13 -1.78 9.71 -39.31 -0.38 -2.16 16 7 C -0.05 -0.56 5.87 -104.71 -0.61 -1.17 16 8 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 9 O -0.27 -4.97 10.41 -40.01 -0.42 -5.39 16 10 C 0.07 1.08 3.07 -26.98 -0.08 1.00 16 11 H 0.11 1.67 7.84 -51.93 -0.41 1.27 16 12 C 0.52 9.86 6.68 -10.99 -0.07 9.79 16 13 O -0.51 -12.01 15.92 -13.48 -0.21 -12.22 16 14 N -0.59 -9.70 2.24 -173.94 -0.39 -10.09 16 15 C 0.07 0.90 9.16 59.85 0.55 1.45 16 16 C 0.13 2.16 2.79 -67.93 -0.19 1.97 16 17 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 18 C -0.16 -1.90 9.18 37.16 0.34 -1.56 16 19 C 0.14 2.92 5.56 -4.04 -0.02 2.90 16 20 N -0.73 -19.13 5.43 -59.91 -0.33 -19.45 16 21 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 25 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C -0.09 -1.11 5.74 -26.52 -0.15 -1.26 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.40 5.95 -51.93 -0.31 0.09 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 37 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 40 H 0.06 0.61 4.76 -51.93 -0.25 0.36 16 41 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 46 H 0.39 11.13 7.07 -40.82 -0.29 10.84 16 47 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 48 H 0.10 0.87 6.69 -51.93 -0.35 0.52 16 49 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -36.54 390.55 -9.40 -45.94 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.53 Total: 7.91 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.11 Total: -1.92 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.01 Total: -58.11 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.63 Total: -17.61 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.54 -9.40 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568318708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.275 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds