Wall clock time and date at job start Sat Apr 11 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38402 * 120.11396 * 2 1 4 4 C 1.37697 * 119.97448 * 179.97438 * 3 2 1 5 5 C 1.38925 * 120.78476 * 0.36992 * 4 3 2 6 6 C 1.39237 * 118.88417 * 359.49123 * 5 4 3 7 7 C 1.37979 * 120.23456 * 0.33484 * 6 5 4 8 8 C 1.50704 * 119.82498 * 180.02562 * 7 6 5 9 9 O 1.36384 * 111.31694 * 179.09360 * 5 4 3 10 10 C 1.43781 * 109.09824 * 18.75245 * 9 5 4 11 11 H 1.08992 * 110.74413 * 90.91306 * 10 9 5 12 12 C 1.50699 * 110.74833 * 214.08195 * 10 9 5 13 13 O 1.21281 * 119.99933 * 3.66363 * 12 10 9 14 14 N 1.34773 * 120.00114 * 183.66927 * 12 10 9 15 15 C 1.46505 * 119.99965 * 5.33018 * 14 12 10 16 16 C 1.46498 * 120.00304 * 185.32363 * 14 12 10 17 17 H 1.09005 * 109.46677 * 0.02562 * 16 14 12 18 18 C 1.52998 * 109.47110 * 120.00034 * 16 14 12 19 19 C 1.52996 * 109.47358 * 240.00386 * 16 14 12 20 20 N 1.46500 * 109.47249 * 54.99934 * 19 16 14 21 21 C 1.36938 * 119.99931 * 180.02562 * 20 19 16 22 22 H 1.07999 * 120.00307 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99885 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00222 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99982 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47076 * 59.99541 * 25 23 21 27 27 H 1.48492 * 109.47308 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47288 * 299.99940 * 25 23 21 29 29 C 1.51642 * 132.18117 * 180.39967 * 4 3 2 30 30 H 1.08994 * 109.46942 * 270.00212 * 1 2 3 31 31 H 1.09005 * 109.46781 * 30.00424 * 1 2 3 32 32 H 1.08998 * 109.46373 * 150.00322 * 1 2 3 33 33 H 1.08001 * 120.00615 * 359.97438 * 3 2 1 34 34 H 1.07990 * 119.88341 * 180.35261 * 6 5 4 35 35 H 1.09001 * 109.47479 * 89.99438 * 8 7 6 36 36 H 1.08996 * 109.46812 * 209.99561 * 8 7 6 37 37 H 1.09005 * 109.47060 * 329.99565 * 8 7 6 38 38 H 1.08991 * 109.47482 * 84.90608 * 15 14 12 39 39 H 1.08998 * 109.47069 * 204.91658 * 15 14 12 40 40 H 1.09002 * 109.46658 * 324.90748 * 15 14 12 41 41 H 1.08994 * 109.46908 * 60.00168 * 18 16 14 42 42 H 1.09005 * 109.47339 * 180.02562 * 18 16 14 43 43 H 1.09010 * 109.47035 * 300.00079 * 18 16 14 44 44 H 1.08999 * 109.47171 * 175.00170 * 19 16 14 45 45 H 1.08997 * 109.46835 * 294.99547 * 19 16 14 46 46 H 0.97001 * 120.00011 * 0.02562 * 20 19 16 47 47 H 0.96995 * 120.00758 * 180.02562 * 24 23 21 48 48 H 1.08998 * 110.94247 * 46.43532 * 29 4 3 49 49 H 1.09007 * 110.93658 * 282.75363 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1972 0.0000 4 6 3.5784 1.1939 0.0005 5 6 4.2865 -0.0013 -0.0066 6 6 3.5805 -1.2014 -0.0036 7 6 2.2007 -1.1958 -0.0005 8 6 1.4459 -2.5001 0.0033 9 8 5.6322 0.2198 -0.0248 10 6 5.8935 1.5664 0.4061 11 1 6.0455 1.6039 1.4847 12 6 7.0848 2.1373 -0.3191 13 8 7.6338 1.4909 -1.1862 14 7 7.5402 3.3660 -0.0042 15 6 6.9528 4.0990 1.1202 16 6 8.6226 3.9687 -0.7859 17 1 8.9283 3.2805 -1.5741 18 6 8.1326 5.2757 -1.4124 19 6 9.8137 4.2573 0.1300 20 7 10.2074 3.0271 0.8213 21 6 11.2577 3.0416 1.6999 22 1 11.7960 3.9598 1.8829 23 6 11.6311 1.8759 2.3546 24 7 10.9754 0.7568 2.1312 25 14 13.0642 1.8955 3.5526 26 1 12.7756 2.8489 4.6540 27 1 13.2583 0.5348 4.1145 28 1 14.2976 2.3187 2.8421 29 6 4.5994 2.3151 0.0085 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6634 2.1337 -0.0004 34 1 4.1147 -2.1399 -0.0033 35 1 1.2662 -2.8130 1.0319 36 1 0.4925 -2.3696 -0.5085 37 1 2.0330 -3.2613 -0.5106 38 1 7.4391 3.7939 2.0466 39 1 7.0951 5.1692 0.9703 40 1 5.8868 3.8791 1.1799 41 1 7.8267 5.9639 -0.6246 42 1 8.9379 5.7240 -1.9945 43 1 7.2840 5.0701 -2.0651 44 1 10.6501 4.6228 -0.4659 45 1 9.5330 5.0127 0.8639 46 1 9.7242 2.2023 0.6566 47 1 11.2360 -0.0577 2.5889 48 1 4.3426 3.0705 0.7512 49 1 4.6958 2.7611 -0.9814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568318708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:19 Heat of formation + Delta-G solvation = -46.792583 kcal Electronic energy + Delta-G solvation = -29039.945089 eV Core-core repulsion = 25160.032760 eV Total energy + Delta-G solvation = -3879.912329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53930 -40.85263 -39.11801 -37.80833 -35.95430 -34.48700 -33.73751 -32.91612 -32.20492 -31.29064 -28.11455 -27.90471 -27.59425 -27.35013 -24.76111 -24.30538 -23.08934 -22.49678 -21.42564 -20.24421 -19.16262 -18.82043 -18.01151 -17.71166 -17.43607 -16.82387 -16.49653 -16.04148 -15.74136 -15.38526 -15.29859 -15.18789 -14.96674 -14.72862 -14.36954 -14.17287 -14.00865 -13.86026 -13.74223 -13.70833 -13.53016 -13.27346 -13.15785 -13.13834 -13.01411 -12.80777 -12.76013 -12.65085 -12.54298 -12.20181 -12.15328 -11.84236 -11.81464 -11.75143 -11.59883 -11.00495 -10.81992 -9.74164 -9.66559 -9.02990 -8.97810 -7.95113 -5.26277 0.24621 0.34727 1.33340 1.42735 1.47265 1.53586 1.63964 2.38257 2.53552 2.65657 3.15244 3.27113 3.37234 3.60715 3.82051 3.84473 3.91593 3.95931 4.07278 4.10529 4.22858 4.28285 4.30458 4.41946 4.44273 4.50901 4.62355 4.68223 4.73020 4.77677 4.79002 4.81346 4.85872 4.90720 4.96907 5.01426 5.04191 5.13497 5.17535 5.24982 5.30960 5.34764 5.39314 5.45023 5.57716 5.66244 5.74938 6.15499 6.23330 6.30926 7.04720 7.29600 8.06956 8.29369 9.27728 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002929 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.334912 B = 9556.367260 C =10798.389598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.117 4.117 3 C -0.063 4.063 4 C -0.180 4.180 5 C 0.064 3.936 6 C -0.156 4.156 7 C -0.057 4.057 8 C -0.115 4.115 9 O -0.317 6.317 10 C 0.065 3.935 11 H 0.115 0.885 12 C 0.513 3.487 13 O -0.576 6.576 14 N -0.586 5.586 15 C 0.066 3.934 16 C 0.129 3.871 17 H 0.062 0.938 18 C -0.141 4.141 19 C 0.141 3.859 20 N -0.745 5.745 21 C -0.244 4.244 22 H 0.081 0.919 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.978 3.022 26 H -0.271 1.271 27 H -0.300 1.300 28 H -0.278 1.278 29 C -0.078 4.078 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.369 0.631 47 H 0.248 0.752 48 H 0.141 0.859 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.806 6.745 -3.429 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.181 4.181 5 C 0.020 3.980 6 C -0.174 4.174 7 C -0.057 4.057 8 C -0.171 4.171 9 O -0.231 6.231 10 C 0.006 3.994 11 H 0.133 0.867 12 C 0.301 3.699 13 O -0.455 6.455 14 N -0.319 5.319 15 C -0.076 4.076 16 C 0.025 3.975 17 H 0.081 0.919 18 C -0.199 4.199 19 C 0.014 3.986 20 N -0.387 5.387 21 C -0.376 4.376 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.807 3.193 26 H -0.197 1.197 27 H -0.226 1.226 28 H -0.204 1.204 29 C -0.115 4.115 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.176 0.824 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.201 0.799 47 H 0.057 0.943 48 H 0.159 0.841 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.185 6.380 -3.850 27.224 hybrid contribution 1.738 -0.986 0.604 2.087 sum -24.447 5.394 -3.246 25.244 Atomic orbital electron populations 1.20842 0.88064 1.04070 1.03366 1.20070 0.97957 0.91465 1.02273 1.20499 0.90459 0.99568 0.97541 1.20850 0.95569 0.93269 1.08400 1.20083 0.82426 0.96546 0.98968 1.20349 0.94148 0.95240 1.07707 1.19800 0.91191 0.97323 0.97392 1.20949 1.00467 0.92116 1.03590 1.87014 1.21663 1.31356 1.83026 1.23237 0.95261 0.81349 0.99548 0.86745 1.20486 0.84821 0.81666 0.82964 1.90700 1.59829 1.59687 1.35265 1.47634 1.35802 1.15763 1.32693 1.22187 0.99187 0.98817 0.87360 1.21361 0.86336 0.96547 0.93231 0.91946 1.21988 1.02272 0.94264 1.01410 1.21243 0.94287 0.89123 0.93912 1.42575 1.37602 1.07868 1.50705 1.19643 1.07053 0.95125 1.15740 0.90064 1.25681 1.02842 0.95391 1.03362 1.69893 1.44618 1.00001 1.47813 0.85144 0.79145 0.76140 0.78900 1.19691 1.22627 1.20417 1.21735 0.87743 0.96959 1.05057 0.90082 0.90298 0.90050 0.82432 0.86139 0.89752 0.88736 0.91493 0.93817 0.87536 0.88319 0.89644 0.90043 0.91536 0.95173 0.93941 0.79925 0.94308 0.84097 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.61 71.24 0.68 -0.32 16 2 C -0.12 -2.04 5.89 -19.82 -0.12 -2.15 16 3 C -0.06 -1.16 9.70 22.18 0.22 -0.94 16 4 C -0.18 -4.46 6.27 -19.53 -0.12 -4.59 16 5 C 0.06 2.08 7.04 22.67 0.16 2.24 16 6 C -0.16 -4.37 9.71 22.45 0.22 -4.16 16 7 C -0.06 -1.18 5.87 -19.92 -0.12 -1.29 16 8 C -0.12 -1.56 9.60 71.24 0.68 -0.87 16 9 O -0.32 -12.82 10.41 -79.76 -0.83 -13.65 16 10 C 0.07 2.18 3.07 30.43 0.09 2.28 16 11 H 0.12 3.60 7.84 -2.39 -0.02 3.58 16 12 C 0.51 20.49 6.68 87.66 0.59 21.07 16 13 O -0.58 -29.47 15.92 15.17 0.24 -29.23 16 14 N -0.59 -19.33 2.24 -822.61 -1.85 -21.18 16 15 C 0.07 1.53 9.16 127.77 1.17 2.70 16 16 C 0.13 4.39 2.79 44.99 0.13 4.52 16 17 H 0.06 2.62 6.91 -2.38 -0.02 2.60 16 18 C -0.14 -3.09 9.18 71.98 0.66 -2.43 16 19 C 0.14 5.66 5.56 86.38 0.48 6.14 16 20 N -0.75 -40.18 5.43 -343.46 -1.87 -42.05 16 21 C -0.24 -14.12 9.99 84.03 0.84 -13.28 16 22 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -64.12 13.06 21.65 0.28 -63.84 16 25 Si 0.98 47.97 29.55 68.60 2.03 50.00 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 29 C -0.08 -1.75 5.74 30.73 0.18 -1.57 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.55 8.09 -2.38 -0.02 0.53 16 32 H 0.08 0.59 5.95 -2.39 -0.01 0.58 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.12 3.37 8.06 -2.92 -0.02 3.35 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.86 5.94 -2.39 -0.01 0.85 16 37 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.83 6.44 -2.39 -0.02 1.82 16 40 H 0.10 1.58 4.76 -2.39 -0.01 1.57 16 41 H 0.08 1.45 6.66 -2.39 -0.02 1.43 16 42 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.04 1.54 7.84 -2.39 -0.02 1.53 16 46 H 0.37 22.41 7.07 -92.71 -0.66 21.76 16 47 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 48 H 0.14 1.91 6.69 -2.39 -0.02 1.89 16 49 H 0.10 2.12 7.92 -2.38 -0.02 2.10 16 Total: -1.00 -87.26 390.55 4.52 -82.73 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.31 Total: 34.28 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.20 Total: 2.93 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -3.43 Total: -127.07 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.59 Total: -42.88 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -87.26 4.52 -82.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568318708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.942 kcal (2) G-P(sol) polarization free energy of solvation -87.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds