Wall clock time and date at job start Sat Apr 11 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48504 * 109.46847 * 270.00012 * 3 2 1 5 5 H 1.48498 * 109.47464 * 29.99710 * 3 2 1 6 6 H 1.48498 * 109.46980 * 149.99957 * 3 2 1 7 7 C 1.38804 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00662 * 0.02562 * 7 2 1 10 10 C 1.47749 * 125.81790 * 14.06255 * 9 7 2 11 11 C 1.54911 * 104.83777 * 155.83286 * 10 9 7 12 12 C 1.55160 * 101.58274 * 37.09450 * 11 10 9 13 13 C 1.47020 * 125.65110 * 194.15823 * 9 7 2 14 14 H 1.08998 * 109.88293 * 300.59718 * 13 9 7 15 15 C 1.52998 * 109.88215 * 61.60730 * 13 9 7 16 16 C 1.53000 * 109.47437 * 183.32919 * 15 13 9 17 17 C 1.52998 * 109.47494 * 174.92552 * 16 15 13 18 18 N 1.46497 * 109.47254 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00117 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99617 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00126 * 179.72067 * 19 18 17 22 22 O 1.42901 * 109.47097 * 180.27411 * 21 19 18 23 23 C 1.35903 * 116.99615 * 180.02562 * 22 21 19 24 24 C 1.38734 * 120.05930 * 359.72854 * 23 22 21 25 25 C 1.38140 * 119.94393 * 179.70342 * 24 23 22 26 26 C 1.38268 * 120.05414 * 0.59138 * 25 24 23 27 27 C 1.38269 * 120.11520 * 359.68093 * 26 25 24 28 28 C 1.38149 * 120.04878 * 0.02562 * 27 26 25 29 29 H 0.97000 * 119.99293 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.28917 * 37.03399 * 10 9 7 31 31 H 1.08991 * 110.43784 * 274.71085 * 10 9 7 32 32 H 1.09006 * 111.00606 * 279.01835 * 11 10 9 33 33 H 1.09004 * 111.03972 * 155.18444 * 11 10 9 34 34 H 1.09001 * 110.71680 * 206.13061 * 12 11 10 35 35 H 1.09000 * 110.71712 * 82.85980 * 12 11 10 36 36 H 1.08998 * 109.47366 * 63.33142 * 15 13 9 37 37 H 1.09000 * 109.47219 * 303.33425 * 15 13 9 38 38 H 1.09001 * 109.46927 * 54.92071 * 16 15 13 39 39 H 1.08997 * 109.46992 * 294.92720 * 16 15 13 40 40 H 1.09001 * 109.47426 * 59.99825 * 17 16 15 41 41 H 1.09005 * 109.46929 * 299.99862 * 17 16 15 42 42 H 0.96998 * 119.99991 * 359.97438 * 18 17 16 43 43 H 1.08995 * 109.47333 * 300.27546 * 21 19 18 44 44 H 1.09001 * 109.46967 * 60.27686 * 21 19 18 45 45 H 1.08001 * 120.02080 * 359.97438 * 24 23 22 46 46 H 1.07992 * 119.97324 * 180.27732 * 25 24 23 47 47 H 1.07995 * 119.94544 * 179.70953 * 26 25 24 48 48 H 1.07992 * 119.97571 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.02431 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1132 -2.5559 -0.2911 11 6 -0.2525 -4.0227 -0.7694 12 6 0.7679 -4.7476 0.1475 13 6 1.9001 -3.7093 0.2933 14 1 2.6996 -3.9308 -0.4138 15 6 2.4477 -3.7336 1.7217 16 6 3.1168 -5.0834 1.9885 17 6 3.7742 -5.0627 3.3699 18 7 4.4154 -6.3549 3.6251 19 6 5.0612 -6.5687 4.7886 20 8 5.1119 -5.6911 5.6241 21 6 5.7154 -7.9002 5.0537 22 8 6.3245 -7.8827 6.3463 23 6 6.9630 -9.0150 6.7427 24 6 6.9977 -10.1220 5.9073 25 6 7.6526 -11.2696 6.3102 26 6 8.2628 -11.3198 7.5499 27 6 8.2248 -10.2197 8.3868 28 6 7.5763 -9.0677 7.9860 29 1 -0.4849 0.8401 0.0004 30 1 -0.4217 -1.8690 -1.0792 31 1 -0.7055 -2.3925 0.6091 32 1 0.0271 -4.1198 -1.8185 33 1 -1.2630 -4.3951 -0.6005 34 1 1.1366 -5.6562 -0.3286 35 1 0.3234 -4.9722 1.1171 36 1 1.6295 -3.5881 2.4270 37 1 3.1792 -2.9349 1.8441 38 1 3.8751 -5.2697 1.2280 39 1 2.3669 -5.8737 1.9549 40 1 3.0159 -4.8765 4.1305 41 1 4.5242 -4.2724 3.4035 42 1 4.3746 -7.0569 2.9570 43 1 4.9634 -8.6883 5.0170 44 1 6.4762 -8.0884 4.2961 45 1 6.5168 -10.0850 4.9410 46 1 7.6837 -12.1301 5.6584 47 1 8.7703 -12.2195 7.8650 48 1 8.7025 -10.2612 9.3544 49 1 7.5473 -8.2085 8.6398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663120642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:14:05 Heat of formation + Delta-G solvation = -54.862355 kcal Electronic energy + Delta-G solvation = -26980.514899 eV Core-core repulsion = 23100.252639 eV Total energy + Delta-G solvation = -3880.262260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43414 -40.41650 -39.44272 -38.22136 -36.69307 -34.70977 -33.74290 -32.05630 -31.34315 -31.13951 -30.08820 -28.55671 -26.60197 -25.47257 -23.67149 -23.12773 -22.70052 -21.85590 -21.61668 -20.68832 -19.39305 -18.73097 -18.20094 -17.51076 -17.31149 -16.96349 -16.71931 -16.47761 -16.30236 -15.96959 -15.65723 -15.32228 -15.24791 -14.80178 -14.36028 -14.31175 -13.94864 -13.71181 -13.67536 -13.58148 -13.49857 -13.11128 -13.00667 -12.75118 -12.64667 -12.46667 -12.25141 -12.09101 -12.01337 -11.84171 -11.82567 -11.66001 -11.53362 -11.29930 -11.15993 -10.98149 -10.65148 -10.21081 -9.94130 -9.19864 -8.77333 -7.85415 -5.20544 0.40481 0.48552 1.43481 1.44610 1.44984 1.52065 1.53374 2.49314 2.64876 2.85625 3.33214 3.54757 3.71272 3.89518 3.95445 4.00976 4.01654 4.05812 4.09380 4.17612 4.26763 4.31174 4.36290 4.43954 4.48518 4.54769 4.62934 4.72283 4.79285 4.83630 4.86429 5.00050 5.05160 5.10135 5.14735 5.25047 5.31221 5.34732 5.37662 5.48939 5.51047 5.53577 5.62107 5.68882 5.72328 5.80640 5.83934 6.28019 6.33795 6.51054 7.12869 7.14370 7.82919 8.50377 9.26203 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.001690 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.019232 B =16567.162685 C =17545.126630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.114 4.114 16 C -0.106 4.106 17 C 0.125 3.875 18 N -0.704 5.704 19 C 0.507 3.493 20 O -0.580 6.580 21 C 0.045 3.955 22 O -0.325 6.325 23 C 0.105 3.895 24 C -0.213 4.213 25 C -0.084 4.084 26 C -0.163 4.163 27 C -0.085 4.085 28 C -0.176 4.176 29 H 0.245 0.755 30 H 0.029 0.971 31 H -0.010 1.010 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.423 0.577 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.516 -29.210 8.561 33.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.055 0.945 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.001 3.999 18 N -0.359 5.359 19 C 0.293 3.707 20 O -0.459 6.459 21 C -0.033 4.033 22 O -0.239 6.239 23 C 0.060 3.940 24 C -0.232 4.232 25 C -0.101 4.101 26 C -0.181 4.181 27 C -0.103 4.103 28 C -0.195 4.195 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.170 0.830 47 H 0.165 0.835 48 H 0.165 0.835 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.484 -28.178 9.234 32.574 hybrid contribution -0.006 1.645 -0.166 1.654 sum 13.479 -26.532 9.068 31.111 Atomic orbital electron populations 1.70152 1.06275 1.25079 1.58365 1.25657 0.96497 1.00914 1.02915 0.85204 0.77719 0.79749 0.77475 1.21190 1.22346 1.19640 1.19293 0.90686 0.83776 1.42118 0.90611 1.44936 1.06273 1.02518 1.80716 1.21275 0.84611 0.93304 0.96025 1.22881 0.99777 0.95620 0.99313 1.22591 0.95070 0.97328 0.99813 1.21229 0.95222 0.85400 0.93621 0.94532 1.21839 0.98998 0.96579 0.98038 1.21632 1.00564 0.97721 0.94529 1.21288 0.96148 0.84590 0.97889 1.45669 1.54614 1.17253 1.18330 1.20727 0.78627 0.89449 0.81880 1.90756 1.60841 1.47361 1.46926 1.22645 0.99857 0.95401 0.85397 1.86119 1.67838 1.35269 1.34675 1.19343 0.94029 0.85749 0.94875 1.21580 1.06251 0.93667 1.01677 1.21369 0.94696 0.97612 0.96473 1.21476 1.02181 0.99564 0.94913 1.21273 0.96757 0.91709 1.00550 1.20693 1.02812 1.00622 0.95347 0.94566 0.95220 0.99150 0.91762 0.90113 0.88244 0.91030 0.94159 0.94624 0.89646 0.88786 0.92947 0.93354 0.73845 0.85562 0.85696 0.82908 0.82984 0.83521 0.83456 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.21 10.58 21.65 0.23 -57.98 16 2 C -0.07 -3.87 5.47 84.86 0.46 -3.40 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.90 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.23 -12.86 9.75 84.03 0.82 -12.04 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -31.26 3.14 -667.45 -2.09 -33.35 16 10 C 0.17 8.52 5.44 86.79 0.47 8.99 16 11 C -0.14 -4.79 7.08 31.99 0.23 -4.56 16 12 C -0.11 -3.23 5.61 31.78 0.18 -3.05 16 13 C 0.15 5.65 3.18 45.34 0.14 5.79 16 14 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.11 -3.87 4.69 30.59 0.14 -3.72 16 16 C -0.11 -2.28 5.07 30.59 0.16 -2.13 16 17 C 0.12 2.97 5.67 86.38 0.49 3.46 16 18 N -0.70 -12.09 5.56 -463.06 -2.57 -14.66 16 19 C 0.51 11.53 7.91 87.66 0.69 12.22 16 20 O -0.58 -20.53 16.50 16.01 0.26 -20.27 16 21 C 0.04 0.64 5.22 71.24 0.37 1.01 16 22 O -0.33 -7.45 9.67 -73.42 -0.71 -8.16 16 23 C 0.10 1.97 6.69 22.51 0.15 2.12 16 24 C -0.21 -2.64 9.04 22.36 0.20 -2.44 16 25 C -0.08 -0.84 10.04 22.25 0.22 -0.61 16 26 C -0.16 -1.71 10.04 22.28 0.22 -1.49 16 27 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 28 C -0.18 -3.23 9.99 22.37 0.22 -3.01 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.03 1.66 6.90 -2.38 -0.02 1.65 16 31 H -0.01 -0.52 8.08 -2.39 -0.02 -0.54 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 36 H 0.04 1.50 8.07 -2.39 -0.02 1.48 16 37 H 0.03 1.39 7.89 -2.39 -0.02 1.37 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.42 3.39 8.47 -92.71 -0.79 2.60 16 43 H 0.13 0.94 7.65 -2.39 -0.02 0.92 16 44 H 0.13 0.97 7.67 -2.39 -0.02 0.95 16 45 H 0.15 0.97 6.30 -2.91 -0.02 0.95 16 46 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 47 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 48 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 49 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -82.29 399.01 2.70 -79.60 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.15 Total: 9.66 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.40 Total: -3.74 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -4.44 Total: -105.99 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.45 Total: -28.43 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -82.29 2.70 -79.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663120642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -82.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds