Wall clock time and date at job start Sat Apr 11 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.38578 * 2 1 4 4 N 1.46497 * 109.46963 * 57.77113 * 3 2 1 5 5 C 1.36938 * 120.00087 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00524 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00549 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99604 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47068 * 90.00399 * 9 7 5 11 11 H 1.48504 * 109.47212 * 210.00235 * 9 7 5 12 12 H 1.48503 * 109.47459 * 330.00208 * 9 7 5 13 13 C 1.54277 * 110.34653 * 122.23317 * 2 1 3 14 14 C 1.54385 * 104.96161 * 118.87017 * 13 2 1 15 15 N 1.48144 * 104.61907 * 23.87011 * 14 13 2 16 16 C 1.34775 * 127.83969 * 140.41308 * 15 14 13 17 17 O 1.21282 * 119.99469 * 179.97438 * 16 15 14 18 18 C 1.50692 * 120.00116 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.47132 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47107 * 179.97438 * 19 18 16 21 21 C 1.38245 * 119.97621 * 269.72297 * 20 19 18 22 22 C 1.38196 * 120.02703 * 179.76673 * 21 20 19 23 23 C 1.38459 * 119.97580 * 0.50964 * 22 21 20 24 24 F 1.35093 * 120.02816 * 179.76644 * 23 22 21 25 25 C 1.38462 * 119.94395 * 359.74370 * 23 22 21 26 26 C 1.38193 * 119.97821 * 0.02562 * 25 23 22 27 27 C 1.48151 * 104.32233 * 320.41113 * 15 14 13 28 28 H 1.09002 * 109.46596 * 182.22867 * 1 2 3 29 29 H 1.08997 * 109.47024 * 302.22695 * 1 2 3 30 30 H 1.09002 * 109.47454 * 62.23309 * 1 2 3 31 31 H 1.09005 * 109.46895 * 177.76849 * 3 2 1 32 32 H 1.09000 * 109.47024 * 297.77135 * 3 2 1 33 33 H 0.96998 * 120.00344 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00483 * 179.97438 * 8 7 5 35 35 H 1.08996 * 110.34603 * 237.74593 * 13 2 1 36 36 H 1.09004 * 110.34436 * 359.89268 * 13 2 1 37 37 H 1.09004 * 110.40869 * 142.65339 * 14 13 2 38 38 H 1.09003 * 110.41159 * 264.96362 * 14 13 2 39 39 H 1.09005 * 109.47336 * 299.99781 * 18 16 15 40 40 H 1.09005 * 109.47508 * 59.99878 * 18 16 15 41 41 H 1.09000 * 109.46970 * 299.99618 * 19 18 16 42 42 H 1.08993 * 109.47176 * 59.99958 * 19 18 16 43 43 H 1.07997 * 119.98508 * 0.02562 * 21 20 19 44 44 H 1.08003 * 120.01331 * 180.25660 * 22 21 20 45 45 H 1.08004 * 120.01109 * 180.02562 * 25 23 22 46 46 H 1.08004 * 119.98997 * 180.02562 * 26 25 23 47 47 H 1.08992 * 110.40889 * 280.80306 * 27 15 14 48 48 H 1.09000 * 110.40506 * 158.36626 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.5426 2.1485 1.1684 5 6 1.8869 3.4568 1.3804 6 1 2.5424 3.9620 0.6864 7 6 1.3943 4.1335 2.4877 8 7 1.7248 5.3912 2.6912 9 14 0.2611 3.2596 3.6884 10 1 1.0708 2.6145 4.7531 11 1 -0.6664 4.2448 4.3002 12 1 -0.5219 2.2248 2.9664 13 6 2.0664 -0.7715 1.2236 14 6 2.8802 -1.9421 0.6312 15 7 3.2665 -1.4816 -0.7228 16 6 4.4425 -1.6663 -1.3547 17 8 4.6062 -1.2245 -2.4723 18 6 5.5535 -2.4226 -0.6732 19 6 6.7691 -2.4882 -1.5999 20 6 7.8803 -3.2441 -0.9181 21 6 8.8036 -2.5659 -0.1443 22 6 9.8202 -3.2586 0.4854 23 6 9.9202 -4.6311 0.3324 24 9 10.9163 -5.3086 0.9436 25 6 8.9980 -5.3086 -0.4472 26 6 7.9794 -4.6144 -1.0720 27 6 2.0667 -0.7720 -1.2247 28 1 -0.3632 -1.0269 0.0400 29 1 -0.3633 0.5480 0.8693 30 1 -0.3634 0.4788 -0.9093 31 1 3.1522 1.4170 0.0400 32 1 1.7407 1.9416 -0.9093 33 1 0.9548 1.6945 1.7923 34 1 1.3803 5.8642 3.4648 35 1 2.7095 -0.1288 1.8247 36 1 1.2399 -1.1490 1.8258 37 1 3.7673 -2.1324 1.2354 38 1 2.2647 -2.8395 0.5682 39 1 5.8279 -1.9118 0.2498 40 1 5.2168 -3.4334 -0.4427 41 1 6.4950 -2.9989 -2.5231 42 1 7.1056 -1.4774 -1.8299 43 1 8.7278 -1.4948 -0.0283 44 1 10.5389 -2.7290 1.0932 45 1 9.0747 -6.3792 -0.5669 46 1 7.2597 -5.1428 -1.6798 47 1 1.3235 -1.4860 -1.5794 48 1 2.3401 -0.0794 -2.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724226708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:03:10 Heat of formation + Delta-G solvation = -49.840181 kcal Electronic energy + Delta-G solvation = -28096.430186 eV Core-core repulsion = 24065.613920 eV Total energy + Delta-G solvation = -4030.816266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.20776 -40.32714 -39.51369 -38.17201 -34.96606 -34.11962 -32.74642 -31.50579 -30.79132 -29.76306 -29.57573 -26.77980 -26.02295 -24.31080 -23.42477 -23.12992 -22.04657 -21.39287 -19.37401 -18.80715 -18.01783 -17.70162 -17.07851 -16.82279 -16.12391 -15.92411 -15.75349 -15.37304 -14.97556 -14.58991 -14.39188 -14.08237 -13.92501 -13.78231 -13.63223 -13.54353 -13.35672 -13.06081 -12.78802 -12.56204 -12.44562 -12.15871 -12.11919 -11.99604 -11.73104 -11.54104 -11.39951 -11.35331 -11.16071 -10.92406 -10.68938 -10.50388 -10.33603 -10.04835 -9.88287 -9.58299 -9.48651 -8.92066 -8.88875 -8.74076 -7.24099 -5.77963 -3.13349 0.75340 0.85619 2.59311 2.87139 3.22546 3.32920 3.34842 3.42077 3.91526 4.20332 4.33689 4.50708 4.56243 4.57125 4.62928 4.74970 4.76258 4.88731 4.93699 4.96199 5.04864 5.16669 5.25115 5.30835 5.41077 5.47026 5.54399 5.60390 5.62371 5.63809 5.69672 5.71421 5.75696 5.81454 5.82299 5.85811 5.91291 6.04268 6.15599 6.20611 6.26080 6.39371 6.46831 6.52642 6.67298 6.74262 7.52672 7.98999 8.11454 8.41000 9.20234 9.92094 10.12391 11.40667 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.002299 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.310516 B =12177.610197 C =13137.057782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C 0.173 3.827 4 N -0.753 5.753 5 C -0.242 4.242 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.130 4.130 14 C 0.102 3.898 15 N -0.621 5.621 16 C 0.534 3.466 17 O -0.543 6.543 18 C -0.130 4.130 19 C -0.065 4.065 20 C -0.090 4.090 21 C -0.085 4.085 22 C -0.150 4.150 23 C 0.090 3.910 24 F -0.142 7.142 25 C -0.153 4.153 26 C -0.088 4.088 27 C 0.116 3.884 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.071 0.929 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -24.615 -5.763 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C 0.046 3.954 4 N -0.399 5.399 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.168 4.168 14 C -0.021 4.021 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.420 6.420 18 C -0.170 4.170 19 C -0.103 4.103 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.169 4.169 23 C 0.071 3.929 24 F -0.121 7.121 25 C -0.171 4.171 26 C -0.106 4.106 27 C -0.006 4.006 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.089 0.911 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.873 -24.194 -6.432 26.911 hybrid contribution -0.668 -0.600 1.278 1.562 sum 9.205 -24.794 -5.154 26.945 Atomic orbital electron populations 1.21807 0.93410 1.00885 1.03077 1.21743 0.96180 0.96682 0.94002 1.20633 0.96157 0.87845 0.90789 1.42716 1.58643 1.11495 1.27032 1.19061 1.24470 0.86155 1.07487 0.89312 1.24667 1.00334 0.95818 0.98393 1.69699 1.48945 1.09325 1.30290 0.86575 0.81247 0.78928 0.81898 1.21108 1.21736 1.20353 1.22699 1.00128 0.96380 0.97596 1.22437 0.99331 0.97414 0.82952 1.48985 1.13164 1.55576 1.17742 1.20231 0.81737 0.79972 0.85744 1.90715 1.80839 1.51051 1.19445 1.21627 0.93628 1.01497 1.00274 1.20350 0.91114 1.01347 0.97487 1.20011 0.96983 0.93868 0.98162 1.21029 0.93289 1.00553 0.95464 1.21189 1.00774 0.92462 1.02501 1.17756 0.87981 0.90437 0.96695 1.91498 1.59147 1.80204 1.81246 1.21146 0.95786 1.00922 0.99289 1.20955 0.97358 0.93578 0.98679 1.22407 0.85858 0.95351 0.97032 0.93083 0.91588 0.92246 0.95511 0.95450 0.80562 0.93070 0.89611 0.90457 0.90405 0.91152 0.88573 0.88903 0.89893 0.89670 0.84667 0.84657 0.84806 0.84936 0.91125 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.07 37.16 0.30 -1.48 16 2 C -0.08 -1.20 0.74 -153.11 -0.11 -1.31 16 3 C 0.17 3.29 4.88 -4.04 -0.02 3.27 16 4 N -0.75 -17.28 4.80 -59.91 -0.29 -17.57 16 5 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 6 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 8 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 9 Si 0.88 21.63 27.73 -169.99 -4.71 16.91 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 13 C -0.13 -1.61 5.90 -25.34 -0.15 -1.76 16 14 C 0.10 0.99 6.92 -2.41 -0.02 0.97 16 15 N -0.62 -7.51 3.32 -169.31 -0.56 -8.07 16 16 C 0.53 6.77 7.91 -10.99 -0.09 6.68 16 17 O -0.54 -8.87 16.25 5.56 0.09 -8.78 16 18 C -0.13 -1.14 4.66 -27.89 -0.13 -1.27 16 19 C -0.07 -0.56 4.63 -27.88 -0.13 -0.69 16 20 C -0.09 -0.71 5.13 -104.61 -0.54 -1.25 16 21 C -0.09 -0.67 9.70 -39.59 -0.38 -1.06 16 22 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 23 C 0.09 0.80 7.30 -39.42 -0.29 0.51 16 24 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 25 C -0.15 -1.15 10.03 -39.52 -0.40 -1.55 16 26 C -0.09 -0.63 9.70 -39.59 -0.38 -1.01 16 27 C 0.12 1.50 6.14 -2.40 -0.01 1.48 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.02 6.75 -51.93 -0.35 0.67 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.36 7.95 4.04 -40.82 -0.16 7.79 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 35 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 36 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 37 H 0.08 0.63 7.30 -51.93 -0.38 0.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.78 7.95 -51.93 -0.41 0.37 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 42 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 48 H 0.08 1.24 7.60 -51.93 -0.39 0.85 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -33.72 392.12 -9.31 -43.03 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.56 Total: 5.44 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.00 Total: -7.01 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.07 Total: -54.15 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.72 -9.31 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724226708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds