Wall clock time and date at job start Sat Apr 11 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 109.47532 * 2 1 4 4 C 1.53000 * 109.47154 * 239.99576 * 2 1 3 5 5 C 1.52996 * 109.46870 * 65.00172 * 4 2 1 6 6 F 1.39905 * 109.46995 * 175.00064 * 5 4 2 7 7 F 1.39903 * 109.47245 * 295.00207 * 5 4 2 8 8 C 1.50700 * 109.46885 * 120.00233 * 2 1 3 9 9 O 1.21280 * 120.00437 * 24.84902 * 8 2 1 10 10 N 1.34786 * 119.99731 * 204.85020 * 8 2 1 11 11 C 1.46920 * 120.63021 * 5.23186 * 10 8 2 12 12 C 1.52760 * 109.00792 * 233.57899 * 11 10 8 13 13 C 1.53035 * 109.38461 * 305.59353 * 12 11 10 14 14 N 1.46503 * 109.45895 * 181.25973 * 13 12 11 15 15 C 1.36941 * 119.99973 * 299.92576 * 14 13 12 16 16 H 1.08003 * 120.00173 * 319.10938 * 15 14 13 17 17 C 1.38810 * 119.99767 * 139.09955 * 15 14 13 18 18 N 1.31622 * 120.00294 * 341.86511 * 17 15 14 19 19 Si 1.86804 * 119.99616 * 161.85917 * 17 15 14 20 20 H 1.48503 * 109.46992 * 60.00732 * 19 17 15 21 21 H 1.48501 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47439 * 300.00211 * 19 17 15 23 23 C 1.46504 * 120.00210 * 119.93063 * 14 13 12 24 24 C 1.53001 * 109.46828 * 84.41621 * 23 14 13 25 25 O 1.42899 * 109.47216 * 65.00599 * 24 23 14 26 26 C 1.53037 * 109.54273 * 61.23710 * 13 12 11 27 27 C 1.46933 * 120.62601 * 185.51053 * 10 8 2 28 28 H 1.08998 * 109.47495 * 172.50817 * 1 2 3 29 29 H 1.09001 * 109.47134 * 52.50065 * 1 2 3 30 30 H 1.08999 * 109.46917 * 292.50901 * 1 2 3 31 31 H 1.09000 * 109.47766 * 185.00371 * 4 2 1 32 32 H 1.09004 * 109.47173 * 305.00346 * 4 2 1 33 33 H 1.08997 * 109.47167 * 55.00259 * 5 4 2 34 34 H 1.08996 * 109.58443 * 353.42055 * 11 10 8 35 35 H 1.09000 * 109.58432 * 113.84297 * 11 10 8 36 36 H 1.08997 * 109.56696 * 185.54999 * 12 11 10 37 37 H 1.09003 * 109.35678 * 65.50221 * 12 11 10 38 38 H 1.08997 * 109.45989 * 301.21560 * 13 12 11 39 39 H 0.97000 * 119.99742 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46732 * 204.41633 * 23 14 13 41 41 H 1.08996 * 109.46541 * 324.42039 * 23 14 13 42 42 H 1.09004 * 109.46309 * 185.00085 * 24 23 14 43 43 H 1.08990 * 109.47263 * 304.99660 * 24 23 14 44 44 H 0.96692 * 114.00273 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.49986 * 178.68183 * 26 13 12 46 46 H 1.09009 * 109.52121 * 58.60121 * 26 13 12 47 47 H 1.09005 * 109.58162 * 246.15423 * 27 10 8 48 48 H 1.08997 * 109.58961 * 6.44129 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4952 6 9 2.1975 -0.5279 -3.6288 7 9 0.2412 0.0721 -2.6129 8 6 2.0322 -0.7105 1.2305 9 8 1.3358 -1.5374 1.7800 10 7 3.2555 -0.4268 1.7202 11 6 4.0643 0.6515 1.1357 12 6 5.4364 0.0959 0.7587 13 6 6.0680 -0.5714 1.9826 14 7 7.3967 -1.0784 1.6307 15 6 7.5324 -2.0128 0.6389 16 1 6.8246 -2.8248 0.5614 17 6 8.5797 -1.9161 -0.2671 18 7 9.2209 -0.7759 -0.4126 19 14 9.0790 -3.4043 -1.2797 20 1 7.9287 -3.8485 -2.1072 21 1 10.2154 -3.0423 -2.1645 22 1 9.4903 -4.5053 -0.3720 23 6 8.5802 -0.5858 2.3400 24 6 8.7667 -1.3806 3.6340 25 8 9.0555 -2.7440 3.3182 26 6 5.1851 -1.7327 2.4451 27 6 3.8079 -1.1942 2.8449 28 1 -0.3634 -1.0188 -0.1340 29 1 -0.3633 0.6256 -0.8153 30 1 -0.3633 0.3934 0.9494 31 1 3.1263 -0.7997 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.9949 1.0940 -2.4081 34 1 3.5699 1.0368 0.2440 35 1 4.1854 1.4533 1.8641 36 1 6.0774 0.9080 0.4157 37 1 5.3220 -0.6392 -0.0380 38 1 6.1593 0.1582 2.7872 39 1 9.9530 -0.7085 -1.0454 40 1 9.4597 -0.7087 1.7081 41 1 8.4481 0.4697 2.5777 42 1 9.5931 -0.9569 4.2046 43 1 7.8530 -1.3304 4.2261 44 1 9.1865 -3.3079 4.0926 45 1 5.6474 -2.2221 3.3024 46 1 5.0731 -2.4510 1.6328 47 1 3.9077 -0.5459 3.7155 48 1 3.1432 -2.0248 3.0821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098430607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:01:56 Heat of formation + Delta-G solvation = -172.469747 kcal Electronic energy + Delta-G solvation = -31187.835511 eV Core-core repulsion = 26720.932403 eV Total energy + Delta-G solvation = -4466.903108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.08927 -47.08934 -40.26081 -37.73244 -36.20304 -35.16963 -34.61935 -32.00039 -30.73413 -30.39624 -29.18223 -27.74213 -25.49486 -24.45716 -23.25604 -22.89362 -21.99060 -20.58360 -19.84529 -18.68633 -18.00363 -17.45385 -16.98635 -16.62751 -16.45384 -16.01054 -15.56639 -14.91133 -14.84576 -14.53404 -14.43666 -13.99083 -13.81078 -13.76469 -13.55892 -13.27230 -13.23965 -13.08914 -12.86297 -12.71150 -12.41444 -12.19096 -11.97339 -11.61556 -11.59898 -11.42764 -11.21979 -11.17545 -11.08279 -10.94108 -10.76071 -10.67969 -10.55226 -10.07808 -9.95190 -9.90359 -9.58946 -9.46309 -9.12117 -8.43585 -8.38292 -6.49202 -5.74574 -3.33107 2.61550 3.10598 3.42524 3.47150 3.53152 3.70778 4.07176 4.30788 4.36190 4.52858 4.62910 4.77951 4.94936 5.03247 5.12336 5.22923 5.24833 5.39369 5.48162 5.49393 5.50619 5.64346 5.67984 5.73144 5.79544 5.86203 5.94696 5.98562 6.04120 6.10014 6.16771 6.25028 6.35824 6.43391 6.58830 6.65547 6.76788 6.80651 7.06837 7.14491 7.55652 7.60799 7.88735 8.26666 8.44014 8.63201 9.23732 9.85558 10.43429 11.28079 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003963 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.529758 B = 7063.159891 C = 8557.529028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.165 4.165 5 C 0.267 3.733 6 F -0.203 7.203 7 F -0.203 7.203 8 C 0.521 3.479 9 O -0.546 6.546 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.135 4.135 13 C 0.178 3.822 14 N -0.571 5.571 15 C -0.236 4.236 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.282 1.282 23 C 0.149 3.851 24 C 0.058 3.942 25 O -0.544 6.544 26 C -0.139 4.139 27 C 0.114 3.886 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.253 0.747 40 H 0.097 0.903 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.350 0.650 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 6.382 3.152 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.116 0.884 4 C -0.203 4.203 5 C 0.213 3.787 6 F -0.184 7.184 7 F -0.184 7.184 8 C 0.308 3.692 9 O -0.423 6.423 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.175 4.175 13 C 0.071 3.929 14 N -0.290 5.290 15 C -0.366 4.366 16 H 0.070 0.930 17 C -0.180 4.180 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.208 1.208 23 C 0.023 3.977 24 C -0.023 4.023 25 O -0.346 6.346 26 C -0.179 4.179 27 C -0.009 4.009 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.193 0.807 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.790 6.228 2.672 13.599 hybrid contribution 0.583 -0.986 0.022 1.146 sum -11.207 5.242 2.694 12.662 Atomic orbital electron populations 1.21922 0.91931 1.03687 1.02602 1.21261 0.98704 1.00483 0.92628 0.88387 1.22653 1.04817 1.01226 0.91620 1.21869 0.74650 0.98697 0.83502 1.93014 1.84803 1.86394 1.54232 1.92941 1.31529 1.97708 1.96264 1.20336 0.81082 0.82726 0.85029 1.90666 1.56052 1.34894 1.60711 1.48185 1.15992 1.35109 1.34241 1.21917 0.93209 0.89008 0.97924 1.22243 0.92811 1.01376 1.01077 1.20296 0.86781 0.92243 0.93625 1.43645 0.99124 1.47129 1.39062 1.18662 1.12028 1.01712 1.04231 0.92989 1.25133 1.00504 0.95728 0.96619 1.69953 1.24075 1.22932 1.36802 0.86527 0.77859 0.83604 0.79616 1.21029 1.21887 1.20806 1.20936 0.94303 0.91992 0.90507 1.23115 0.95658 0.83526 0.99959 1.86847 1.93736 1.19997 1.33973 1.22360 0.93285 1.00456 1.01783 1.21679 0.95855 0.95750 0.87575 0.91506 0.90610 0.92319 0.87512 0.88587 0.87062 0.90579 0.91705 0.90725 0.90948 0.93645 0.93761 0.88477 0.94589 0.96300 0.95975 0.80745 0.91550 0.91335 0.92206 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.76 37.15 0.29 -1.22 16 2 C -0.11 -1.17 1.90 -91.77 -0.17 -1.35 16 3 H 0.10 0.81 6.25 -51.93 -0.32 0.49 16 4 C -0.16 -1.79 4.87 -26.73 -0.13 -1.92 16 5 C 0.27 2.61 5.25 37.16 0.20 2.80 16 6 F -0.20 -2.55 17.34 2.25 0.04 -2.51 16 7 F -0.20 -2.18 14.30 2.25 0.03 -2.14 16 8 C 0.52 7.48 6.79 -10.98 -0.07 7.40 16 9 O -0.55 -9.68 15.67 5.56 0.09 -9.60 16 10 N -0.60 -8.42 2.98 -173.03 -0.52 -8.93 16 11 C 0.10 1.27 6.25 -3.94 -0.02 1.25 16 12 C -0.14 -2.25 5.29 -26.84 -0.14 -2.40 16 13 C 0.18 3.26 2.60 -67.89 -0.18 3.08 16 14 N -0.57 -12.83 2.30 -165.62 -0.38 -13.21 16 15 C -0.24 -6.07 7.98 -15.06 -0.12 -6.19 16 16 H 0.05 1.39 6.92 -52.48 -0.36 1.03 16 17 C 0.02 0.53 4.95 -17.43 -0.09 0.44 16 18 N -0.89 -24.73 11.60 55.49 0.64 -24.09 16 19 Si 0.89 21.83 29.59 -169.99 -5.03 16.80 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.27 5.55 -4.04 -0.02 3.25 16 24 C 0.06 1.08 7.39 37.16 0.27 1.35 16 25 O -0.54 -11.03 13.40 -35.23 -0.47 -11.51 16 26 C -0.14 -2.38 5.29 -26.61 -0.14 -2.52 16 27 C 0.11 1.68 6.42 -3.71 -0.02 1.66 16 28 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.08 0.68 5.96 -51.93 -0.31 0.37 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.76 5.33 -51.93 -0.28 0.48 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 38 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.10 2.51 5.74 -51.93 -0.30 2.21 16 41 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.35 5.14 9.12 45.56 0.42 5.56 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.35 7.09 -51.92 -0.37 0.98 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.31 7.04 -51.93 -0.37 0.94 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -31.69 381.59 -7.10 -38.79 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.90 Total: 5.02 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.36 Total: 5.63 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.25 Total: -46.23 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.38 Total: -21.10 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.69 -7.10 -38.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098430607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.682 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds